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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034905 ID=TCONS_00034905|Name=TCONS_00034905|organism=Clytia hemisphaerica|type=transcript|length=1112bp
GCACCAAAGTAAAAACTTAGCCTCGATGCTTGCAGTTTGATACTAGGTAG
CTGTAATAATTTGTTATTGTTCCTTGTACCACGATCATGTTTTATCACTt
taaaataattatcaaaaatatcatGTTGGTACACTTTCTTTACACAATTT
TTCACCATTGTGAAAAGTTCTTTCTCCATCAAAGATTCAGTCTTTTTAAC
TGAAGGATACCAATGATCTTAGCTGCACGACGTTCAAGAGAAGCAAGCTT
TGATTTTTGCCCCTCATTGAAGGTGGTTTTGATCGAGCAACTATAAGTCA
ACAGTGGGACAATCATCAGTTCATAAATTGATTGTGCAGCACTGGCTGTC
AAAATTTTTCGAACACCAAATAACAAACGCAATCGACCTTGGGTCACGGA
GTTAACGACGGTGTTGTTGTACTTTATCGTAACTGTTTTTCCATACCTTG
CCATTCGTTGAGCAGTACCTAGCAACATTACCTCAGTCTTACCTTTCTTG
AAATTTAGTAAAAGTTCTTTCTCCTCACAATATTTGACAATGGTTGATAG
ATCTTTATTGAGGGCAGTTTTGATTTCATTTGTTGTTTTGGCACCAAAAT
AGATAACAGTGTCATCGGCATATTGGATGATTGAAGAGTGTTTGATAGAA
TCACAAAGGTCGTTAAAAAAGACAATGAAGAGGAGTGGCCCAAGAATTGA
CCCCTGTGGGACTCCTGATGTGATAGCCTCTTTTTCCGAAAAGAGGCTAT
TGATTTCAACACATTGGGTACGATTGAATAGATAGTCGGTGATCCAGGCT
AGTTCTGGCCCAGAAACACCATgtaataaaagtttttcaatgatCAAACT
GTGCCCCATTGtatcaaaggctttagaaatATCTAAAAACAGACATCCAA
CAAGAAGTCCATCTTCAAAGCCTCTCCGCACAGAATCACACAGGAGGGTA
GCAGCAAGTTTGGTGGATCGTCTTTTTCGAAAGCCAAACTGACAGTCTGA
AAGAAGTTTATTGTCTTCCAAGAAAGAATATAACTGCTCATGTACTGTTC
TTTCAAGCAGTTTTGACAAAATCGGTAATATTGAAATAGGTCTATAATTT
TCGACAAGATCT Run BLAST on NCBI protein sequence of TCONS_00034905-protein >TCONS_00034905-protein ID=TCONS_00034905-protein|Name=TCONS_00034905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
DLVENYRPISILPILSKLLERTVHEQLYSFLEDNKLLSDCQFGFRKRRST
KLAATLLCDSVRRGFEDGLLVGCLFLDISKAFDTMGHSLIIEKLLLHGVS
GPELAWITDYLFNRTQCVEINSLFSEKEAITSGVPQGSILGPLLFIVFFN
DLCDSIKHSSIIQYADDTVIYFGAKTTNEIKTALNKDLSTIVKYCEEKEL
LLNFKKGKTEVMLLGTAQRMARYGKTVTIKYNNTVVNSVTQGRLRLLFGV
RKILTASAAQSIYELMIVPLLTYSCSIKTTFNEGQKSKLASLERRAAKII
GILQLKRLNL Run BLAST on NCBI transcript from alignment at sc0001230:61839..62950 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034905 ID=TCONS_00034905|Name=TCONS_00034905|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at sc0001230:61839..62950 (Clytia hemisphaerica)
AGATCTTGTCGAAAATTATAGACCTATTTCAATATTACCGATTTTGTCAA
AACTGCTTGAAAGAACAGTACATGAGCAGTTATATTCTTTCTTGGAAGAC
AATAAACTTCTTTCAGACTGTCAGTTTGGCTTTCGAAAAAGACGATCCAC
CAAACTTGCTGCTACCCTCCTGTGTGATTCTGTGCGGAGAGGCTTTGAAG
ATGGACTTCTTGTTGGATGTCTGTTTTTAGATatttctaaagcctttgat
aCAATGGGGCACAGTTTGatcattgaaaaacttttattacATGGTGTTTC
TGGGCCAGAACTAGCCTGGATCACCGACTATCTATTCAATCGTACCCAAT
GTGTTGAAATCAATAGCCTCTTTTCGGAAAAAGAGGCTATCACATCAGGA
GTCCCACAGGGGTCAATTCTTGGGCCACTCCTCTTCATTGTCTTTTTTAA
CGACCTTTGTGATTCTATCAAACACTCTTCAATCATCCAATATGCCGATG
ACACTGTTATCTATTTTGGTGCCAAAACAACAAATGAAATCAAAACTGCC
CTCAATAAAGATCTATCAACCATTGTCAAATATTGTGAGGAGAAAGAACT
TTTACTAAATTTCAAGAAAGGTAAGACTGAGGTAATGTTGCTAGGTACTG
CTCAACGAATGGCAAGGTATGGAAAAACAGTTACGATAAAGTACAACAAC
ACCGTCGTTAACTCCGTGACCCAAGGTCGATTGCGTTTGTTATTTGGTGT
TCGAAAAATTTTGACAGCCAGTGCTGCACAATCAATTTATGAACTGATGA
TTGTCCCACTGTTGACTTATAGTTGCTCGATCAAAACCACCTTCAATGAG
GGGCAAAAATCAAAGCTTGCTTCTCTTGAACGTCGTGCAGCTAAGATCAT
TGGTATCCTTCAGTTAAAAAGACTGAATCTTTGATGGAGAAAGAACTTTT
CACAATGGTGAAAAATTGTGTAAAGAAAGTGTACCAACatgatatttttg
ataattattttaaAGTGATAAAACATGATCGTGGTACAAGGAACAATAAC
AAATTATTACAGCTACCTAGTATCAAACTGCAAGCATCGAGGCTAAGTTT
TTACTTTGGTGC Coding sequence (CDS) from alignment at sc0001230:61839..62950 >TCONS_00034905 ID=TCONS_00034905|Name=TCONS_00034905|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at sc0001230:61839..62950 (Clytia hemisphaerica)
GATCTTGTCGAAAATTATAGACCTATTTCAATATTACCGATTTTGTCAAA
ACTGCTTGAAAGAACAGTACATGAGCAGTTATATTCTTTCTTGGAAGACA
ATAAACTTCTTTCAGACTGTCAGTTTGGCTTTCGAAAAAGACGATCCACC
AAACTTGCTGCTACCCTCCTGTGTGATTCTGTGCGGAGAGGCTTTGAAGA
TGGACTTCTTGTTGGATGTCTGTTTTTAGATatttctaaagcctttgata
CAATGGGGCACAGTTTGatcattgaaaaacttttattacATGGTGTTTCT
GGGCCAGAACTAGCCTGGATCACCGACTATCTATTCAATCGTACCCAATG
TGTTGAAATCAATAGCCTCTTTTCGGAAAAAGAGGCTATCACATCAGGAG
TCCCACAGGGGTCAATTCTTGGGCCACTCCTCTTCATTGTCTTTTTTAAC
GACCTTTGTGATTCTATCAAACACTCTTCAATCATCCAATATGCCGATGA
CACTGTTATCTATTTTGGTGCCAAAACAACAAATGAAATCAAAACTGCCC
TCAATAAAGATCTATCAACCATTGTCAAATATTGTGAGGAGAAAGAACTT
TTACTAAATTTCAAGAAAGGTAAGACTGAGGTAATGTTGCTAGGTACTGC
TCAACGAATGGCAAGGTATGGAAAAACAGTTACGATAAAGTACAACAACA
CCGTCGTTAACTCCGTGACCCAAGGTCGATTGCGTTTGTTATTTGGTGTT
CGAAAAATTTTGACAGCCAGTGCTGCACAATCAATTTATGAACTGATGAT
TGTCCCACTGTTGACTTATAGTTGCTCGATCAAAACCACCTTCAATGAGG
GGCAAAAATCAAAGCTTGCTTCTCTTGAACGTCGTGCAGCTAAGATCATT
GGTATCCTTCAGTTAAAAAGACTGAATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034905-exon-sc0001230-1491911889:61839..62950 | TCONS_00034905-exon-sc0001230-1491911889:61839..62950 | Clytia hemisphaerica | exon |
| TCONS_00034905-exon-sc0001230-1510915933:61839..62950 | TCONS_00034905-exon-sc0001230-1510915933:61839..62950 | Clytia hemisphaerica | exon |
| TCONS_00034905-exon-sc0001230-1575043694:61839..62950 | TCONS_00034905-exon-sc0001230-1575043694:61839..62950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001230 | supercontig | sc0001230:61839..62950 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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