TCONS_00034895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034895
Unique NameTCONS_00034895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034895 ID=TCONS_00034895|Name=TCONS_00034895|organism=Clytia hemisphaerica|type=transcript|length=783bp
GCAGACGGAAAGGTAGTAaggacaaaaataaaaagtatacaCAAGGCAAA
GAAGTTTACACAATTGAAATTAATCTATGGGTATGACAGCAgactttttt
aaaaagcatcCCCTAGACTAGACAGGTACTCAGTTCTACAGCTCATTTCC
TTAACAAGTGAATCAATTTCAGGAATGCATGATGTAGCAAGCGCAGACCC
AGACTCTGATTTTATTACAAACGTAGGAAAAGCATTAGGCGCAACAATAG
GTTCGATAGCAGACggtttttgaaaagttatcAAAGCAATAGGAACAGCC
TTGTATGATGGTTGAAATGGTGCAGCAGATCTAGATAAGGCAGTAGTAGG
ATCTATAGCAGATGCGTCAGCAGTTTTCCTTGATTCAGCAGGAGGAGCAA
TAGAACATGTAGGTCATGTAGGAGGTTCATTTTTCCAATCAGCTTTCGGA
GGAATATGGGGTCTTGCAAGAACAATAGTAATTTTGCTTCTTGTAGTGGC
TTTCATTTACATAGCGATAAAGCTCGACGCTTTTCCCCAAATAAAAAGAT
GGATCAAAAAGAAAAGGGCAAAATCGaaagacaaacaaaaaactGAAACC
ATAGAAATGACAGAACAGAAACCGAACACAGAAGTACAAGAAggacaaaa
cattgaaatacacACTACACAACCTGAAAATGACATTTCCGAGCCACCTC
ATTACAACACTGTACAACCAACAGCCTATGGACAAACTGAAATACCTAGA
CCATTGTACCCCAAGTTAAGGACATTGCTAAAC
Run BLAST on NCBI

transcript from alignment at sc0001230:14774..15556

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034895 ID=TCONS_00034895|Name=TCONS_00034895|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at sc0001230:14774..15556 (Clytia hemisphaerica)
GTTTAGCAATGTCCTTAACTTGGGGTACAATGGTCTAGGTATTTCAGTTT
GTCCATAGGCTGTTGGTTGTACAGTGTTGTAATGAGGTGGCTCGGAAATG
TCATTTTCAGGTTGTGTAGTgtgtatttcaatgttttgtccTTCTTGTAC
TTCTGTGTTCGGTTTCTGTTCTGTCATTTCTATGGTTTCagttttttgtt
tgtctttCGATTTTGCCCTTTTCTTTTTGATCCATCTTTTTATTTGGGGA
AAAGCGTCGAGCTTTATCGCTATGTAAATGAAAGCCACTACAAGAAGCAA
AATTACTATTGTTCTTGCAAGACCCCATATTCCTCCGAAAGCTGATTGGA
AAAATGAACCTCCTACATGACCTACATGTTCTATTGCTCCTCCTGCTGAA
TCAAGGAAAACTGCTGACGCATCTGCTATAGATCCTACTACTGCCTTATC
TAGATCTGCTGCACCATTTCAACCATCATACAAGGCTGTTCCTATTGCTT
TgataacttttcaaaaaccGTCTGCTATCGAACCTATTGTTGCGCCTAAT
GCTTTTCCTACGTTTGTAATAAAATCAGAGTCTGGGTCTGCGCTTGCTAC
ATCATGCATTCCTGAAATTGATTCACTTGTTAAGGAAATGAGCTGTAGAA
CTGAGTACCTGTCTAGTCTAGGGgatgctttttaaaaaagtcTGCTGTCA
TACCCATAGATTAATTTCAATTGTGTAAACTTCTTTGCCTTGtgtatact
ttttatttttgtcctTACTACCTTTCCGTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020306XLOC_020306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034895-exon-sc0001230-1491911889:14774..15556TCONS_00034895-exon-sc0001230-1491911889:14774..15556Clytia hemisphaericaexon
TCONS_00034895-exon-sc0001230-1510915933:14774..15556TCONS_00034895-exon-sc0001230-1510915933:14774..15556Clytia hemisphaericaexon
TCONS_00034895-exon-sc0001230-1575043694:14774..15556TCONS_00034895-exon-sc0001230-1575043694:14774..15556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001230supercontigsc0001230:14774..15556 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123616	0.0602725	0	0	0	0	0.238391	0.0743931	0	0	0.125239	0	0.164426	0.341516	0.631738	0.56496	0.046399	0.38046	0.459922	0.481276	0.0597594	0.0874456	0	0.128858	0	0	0.0847509	0.0904485	0.068602	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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