TCONS_00034893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034893
Unique NameTCONS_00034893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2129

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034893 ID=TCONS_00034893|Name=TCONS_00034893|organism=Clytia hemisphaerica|type=transcript|length=2129bp
NAGTGATAATTCAATTCCAGAACGATTAACCAAACGCCATTGTGCCTCCA
AGGTAGGAGAGATATACGACCTTCTTGGAAAGATGACGCCAATTTCAGCA
GGATTCAAATTAGACCTTCACGACTTAGTCATCCACAAGATTGACTGGGA
TGATGCTATTCCAAAGGAGCTAAGACCAACCTGGATAAACAACTTCCAAA
TGATGCAAGAGATGAAAACAGTTTACTTCAAGAGATGTGTTGCACCTGAG
GATGCCGAATCATTATCGATTGAAACGATTGACACAGGTGATGCCAGTTC
AAGTATTGCCTGCTCAGCCATCTATTCAAGGATCAAAAGGCGTAGTGGTG
ATTACTGCTGTCAACTTCTGTTTGCCAGGTCAAAAATCCTTCCTGATCAT
ACCTCCCAACCAAGAGCTGAGATGATTGCAGCTCTACTCAACATTTACAC
CAGTGAGGTCGTAAAGAGATCACTTGGAGATCTTCATAAGTCGTCTATGA
AACTTTGTGACAGCCAAGTTGTACTGCACTGGATTGGCAATGATAAAAAA
CCACTCAAACAATGGGTTAGGGACAGAGTGATTGAGATTCGTCGTTTCTC
CCAACCATCTGACTGGTACTATGTATCATCCAAGAACATGGTTGCTGACT
TGGGAACCAGAAAAGGATGCTCAATTGAGGATATATCAatggattctgat
tggattaaCGGATATGAATGGATGTCGAAAGATCAATCTGAATTTCCAGT
CACTCCAATCAACAGCTTGAAGCTTGATGCATCCCAGATANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATGAAAGATCTCT
CATCCACAAGCTTCTGCGTCCCCTTGGTTGATAAACACTCACCTGTTGCA
TACGCCATTGTTAATGACGTACACTGGAATGACCAGAATGCTTCTCATCG
GGGAATAGAAACAACTTTGAGAGCCGTACTCAGACATGCTTACATATTGG
AAGTCAGATCAATCATCAAAGCTATCAAACGATCGTGTCCTAGATGCAGG
TACCTTGAGAAGAAAACTATCGAAGTTGCTATGGGTCCAGTTCCAAGCTC
AAGACTCACTGTTGCTCCTGCGTTTTACATGTGTCAAGTTGATCTATGGG
GTCCATACAAAGCATTCTCTCCACACAACAAACGAGCCACGATCAAAATC
TGGCTTGTAGTATTTTGCTGCTCAACTACCTCGTCAACTTAAATTAAAGT
CATGGACGATTATTCTACACCTGCTTTCTTACAAGCCTTCATTCGTTTCG
CCAGTGATGCAGGCTTTCCAAAAACCCTCTACTGTGACGAAGGAAGTCAA
TTGCTCAAGGGTTGCAAAGATATGAGACTGAAATTCAAGGATACTGTGAA
TCAGCTACATCAAGATGTAGAAGTCGAATTCAACTCATGTCCAGTAGGTG
GCCATAATTTCCATGGGAAATTGGAAAGACGAATTCAAGAAATCAACAAG
TCATTAGAACGAAGCATCTCCAATGAACGTTTATCATTGCTTCAATGGGA
GACTTTGTCCTCTCAGATTGCCAATTGCATCAACAATCAACCTATTGGGA
TCAGAAATGAAGTTTCAGATTTCGAGTCGATGGATCTACTCACCCCAAAC
AGACTTCGCTTAGGACGAAACAATGAGCGAAGCCCTGAAGGAGAGATGCT
AACAACAATTCACCCAAACAAAATCTTGGATGCCAACCAACAATATTTCG
ACGCATGGTTTGAAGTTTGGCTGTCAGCTCATGTACCCAAGCTTTTGTCA
CAGGAGAAGTGGTTCACTTCAGACAGACAACCATCAAAAGGAGATATCGT
GCTATTTCTCAAGCACGAATCCAACATCAACAACACCTATCAATATGGGA
TGATAGACAGTGCCCACAAGGGCAAAGATGTTGTCATCAGACAAGCAACT
GTCAAGTACAAAAACCATCAGGAACAAGCATTTCGACTCACCAAACGCGC
CATTCGTTCACTCGTTCTCATCAGATCGTTTGATGAGATTGACATTATGA
AAGAGCTCGGTACAATGGCTGCACTCGCTGACTCTCGTTTCCACTGGAGC
AACTGATGATTTCGTCGTTGCAGCTATTC
Run BLAST on NCBI

protein sequence of TCONS_00034893-protein

>TCONS_00034893-protein ID=TCONS_00034893-protein|Name=TCONS_00034893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MDDYSTPAFLQAFIRFASDAGFPKTLYCDEGSQLLKGCKDMRLKFKDTVN
QLHQDVEVEFNSCPVGGHNFHGKLERRIQEINKSLERSISNERLSLLQWE
TLSSQIANCINNQPIGIRNEVSDFESMDLLTPNRLRLGRNNERSPEGEML
TTIHPNKILDANQQYFDAWFEVWLSAHVPKLLSQEKWFTSDRQPSKGDIV
LFLKHESNINNTYQYGMIDSAHKGKDVVIRQATVKYKNHQEQAFRLTKRA
IRSLVLIRSFDEIDIMKELGTMAALADSRFHWSN
Run BLAST on NCBI

transcript from alignment at sc0001230:71252..73443-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034893 ID=TCONS_00034893|Name=TCONS_00034893|organism=Clytia hemisphaerica|type=transcript|length=2192bp|location=Sequence derived from alignment at sc0001230:71252..73443- (Clytia hemisphaerica)
NAGTGATAATTCAATTCCAGAACGATTAACCAAACGCCATTGTGCCTCCA
AGGTAGGAGAGATATACGACCTTCTTGGAAAGATGACGCCAATTTCAGCA
GGATTCAAATTAGACCTTCACGACTTAGTCATCCACAAGATTGACTGGGA
TGATGCTATTCCAAAGGAGCTAAGACCAACCTGGATAAACAACTTCCAAA
TGATGCAAGAGATGAAAACAGTTTACTTCAAGAGATGTGTTGCACCTGAG
GATGCCGAATCATTATCGATTGAAACGATTGACACAGGTGATGCCAGTTC
AAGTATTGCCTGCTCAGCCATCTATTCAAGGATCAAAAGGCGTAGTGGTG
ATTACTGCTGTCAACTTCTGTTTGCCAGGTCAAAAATCCTTCCTGATCAT
ACCTCCCAACCAAGAGCTGAGATGATTGCAGCTCTACTCAACATTTACAC
CAGTGAGGTCGTAAAGAGATCACTTGCAGATCTTCATAAGTCGTCTATGA
AACTTTGTGACAGNAGTGAGGTCGTAAAGAGATCACTTGGAGATCTTCAT
AAGTCGTCTATGAAACTTTGTGACAGCCAAGTTGTACTGCACTGGATTGG
CAATGATAAAAAACCACTCAAACAATGGGTTAGGGACAGAGTGATTGAGA
TTCGTCGTTTCTCCCAACCATCTGACTGGTACTATGTATCATCCAAGAAC
ATGGTTGCTGACTTGGGAACCAGAAAAGGATGCTCAATTGAGGATATATC
AATGGATTCTGATTGGATTAACGGATATGAATGGATGTCGAAAGATCAAT
CTGAATTTCCAGTCACTCCAATCAACAGCTTGAAGCTTGATGCATCCCAG
ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCA
ATGAAAGATCTCTCATCCACAAGCTTCTGCGTCCCCTTGGTTGATAAACA
CTCACCTGTTGCATACGCCATTGTTAATGACGTACACTGGAATGACCAGA
ATGCTTCTCATCGGGGAATAGAAACAACTTTGAGAGCCGTACTCAGACAT
GCTTACATATTGGAAGTCAGATCAATCATCAAAGCTATCAAACGATCGTG
TCCTAGATGCAGGTACCTTGAGAAGAAAACTATCGAAGTTGCTATGGGTC
CAGTTCCAAGCTCAAGACTCACTGTTGCTCCTGCGTTTTACATGTGTCAA
GTTGATCTATGGGGTCCATACAAAGCATTCTCTCCACACAACAAACGAGC
CACGATCAAAATCTGGCTTGTAGTATTTTGCTGCTCAACTACCTCGTCAA
CTTAAATTAAAGTCATGGACGATTATTCTACACCTGCTTTCTTACAAGCC
TTCATTCGTTTCGCCAGTGATGCAGGCTTTCCAAAAACCCTCTACTGTGA
CGAAGGAAGTCAATTGCTCAAGGGTTGCAAAGATATGAGACTGAAATTCA
AGGATACTGTGAATCAGCTACATCAAGATGTAGAAGTCGAATTCAACTCA
TGTCCAGTAGGTGGCCATAATTTCCATGGGAAATTGGAAAGACGAATTCA
AGAAATCAACAAGTCATTAGAACGAAGCATCTCCAATGAACGTTTATCAT
TGCTTCAATGGGAGACTTTGTCCTCTCAGATTGCCAATTGCATCAACAAT
CAACCTATTGGGATCAGAAATGAAGTTTCAGATTTCGAGTCGATGGATCT
ACTCACCCCAAACAGACTTCGCTTAGGACGAAACAATGAGCGAAGCCCTG
AAGGAGAGATGCTAACAACAATTCACCCAAACAAAATCTTGGATGCCAAC
CAACAATATTTCGACGCATGGTTTGAAGTTTGGCTGTCAGCTCATGTACC
CAAGCTTTTGTCACAGGAGAAGTGGTTCACTTCAGACAGACAACCATCAA
AAGGAGATATCGTGCTATTTCTCAAGCACGAATCCAACATCAACAACACC
TATCAATATGGGATGATAGACAGTGCCCACAAGGGCAAAGATGTTGTCAT
CAGACAAGCAACTGTCAAGTACAAAAACCATCAGGAACAAGCATTTCGAC
TCACCAAACGCGCCATTCGTTCACTCGTTCTCATCAGATCGTTTGATGAG
ATTGACATTATGAAAGAGCTCGGTACAATGGCTGCACTCGCTGACTCTCG
TTTCCACTGGAGCAACTGATGATTTCGTCGTTGCAGCTATTC

Coding sequence (CDS) from alignment at sc0001230:71252..73443-

>TCONS_00034893 ID=TCONS_00034893|Name=TCONS_00034893|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0001230:71252..73443- (Clytia hemisphaerica)
ATGGACGATTATTCTACACCTGCTTTCTTACAAGCCTTCATTCGTTTCGC
CAGTGATGCAGGCTTTCCAAAAACCCTCTACTGTGACGAAGGAAGTCAAT
TGCTCAAGGGTTGCAAAGATATGAGACTGAAATTCAAGGATACTGTGAAT
CAGCTACATCAAGATGTAGAAGTCGAATTCAACTCATGTCCAGTAGGTGG
CCATAATTTCCATGGGAAATTGGAAAGACGAATTCAAGAAATCAACAAGT
CATTAGAACGAAGCATCTCCAATGAACGTTTATCATTGCTTCAATGGGAG
ACTTTGTCCTCTCAGATTGCCAATTGCATCAACAATCAACCTATTGGGAT
CAGAAATGAAGTTTCAGATTTCGAGTCGATGGATCTACTCACCCCAAACA
GACTTCGCTTAGGACGAAACAATGAGCGAAGCCCTGAAGGAGAGATGCTA
ACAACAATTCACCCAAACAAAATCTTGGATGCCAACCAACAATATTTCGA
CGCATGGTTTGAAGTTTGGCTGTCAGCTCATGTACCCAAGCTTTTGTCAC
AGGAGAAGTGGTTCACTTCAGACAGACAACCATCAAAAGGAGATATCGTG
CTATTTCTCAAGCACGAATCCAACATCAACAACACCTATCAATATGGGAT
GATAGACAGTGCCCACAAGGGCAAAGATGTTGTCATCAGACAAGCAACTG
TCAAGTACAAAAACCATCAGGAACAAGCATTTCGACTCACCAAACGCGCC
ATTCGTTCACTCGTTCTCATCAGATCGTTTGATGAGATTGACATTATGAA
AGAGCTCGGTACAATGGCTGCACTCGCTGACTCTCGTTTCCACTGGAGCA
ACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020304XLOC_020304Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034893-proteinTCONS_00034893-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034893-exon-sc0001230-1575043694:72987..73443TCONS_00034893-exon-sc0001230-1575043694:72987..73443Clytia hemisphaericaexon
TCONS_00034893-exon-sc0001230-1575043694:71252..72923TCONS_00034893-exon-sc0001230-1575043694:71252..72923Clytia hemisphaericaexon
TCONS_00034893-exon-sc0001230-1510915933:72987..73443TCONS_00034893-exon-sc0001230-1510915933:72987..73443Clytia hemisphaericaexon
TCONS_00034893-exon-sc0001230-1510915933:71252..72923TCONS_00034893-exon-sc0001230-1510915933:71252..72923Clytia hemisphaericaexon
TCONS_00034893-exon-sc0001230-1491911889:72987..73443TCONS_00034893-exon-sc0001230-1491911889:72987..73443Clytia hemisphaericaexon
TCONS_00034893-exon-sc0001230-1491911889:71252..72923TCONS_00034893-exon-sc0001230-1491911889:71252..72923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001230supercontigsc0001230:71252..73443 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.10602	3.87183	2.08694	1.4332	2.64554	2.54073	2.16205	3.02884	2.11636	2.83986	2.17556	2.36326	3.37885	3.65473	0.494876	0.909267	0.759562	1.10715	0.968771	0.46957	1.00473	0.858535	1.0825	1.50853	17.6247	11.9758	0.420024	0.464782	0.530124	0.833567
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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