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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034887 ID=TCONS_00034887|Name=TCONS_00034887|organism=Clytia hemisphaerica|type=transcript|length=993bp
NNGCTTCGTTTGCTGGTGACGGTACAAGTAAATCGATGTTAAAGTCACCT
GTAATTATTATTGGACCATGATGAACAATTGCGGCTTGGGAAACAAGTGA
TTCGAATTTGTTGAGCCActcaagtttttcattttgtttactGCTTGGCT
GATACACAATGCCAATCAAGACATTCGAGAGACGGTTCTTGCCAGTCAAT
TCAATCCACTGGTGTTCGATAGTTGTGTCAAAGGATTAAATATCTTTACG
GGCTTTGTGTTTGATGTCTGTTTTGATGTAGTATCCGACACCACCGCCAT
CTTTAGCATCTCGGTTTCGAAAGTCTTTTTCGTAGCCATCTATTTCAAGG
TGCGATAAAAGGTTCTTGTTGTCTTTCAACCAGGTCTAGGACATTTTGAT
GATGTCGATTTGGTGCTCTGAGACGTATGATTCGAATTCGGTAAAGGTAG
ATGCCATAGATTGGGTGTTGAGATGGGCGGCTACGGATAGATGTTTACGG
TGCTGGTTCAGCAGAGCAACTGATGGACTGACAAAATCGTTAGGAATATG
GTCGGCAGAGGCGTCCAGATCTTCAAAGTTTCGAATGTTGAAGAACGGTT
GGATGACCAATGTGCACGTATGACAGGTCCATTGATACGGTATGCGGGAG
TTTTCTATACGTATGTGCGCGCGTGCGCATTTGAGCTGTTCTTTGCATGT
TATACATTCGAGTCGCTTGGAGTTGATTCTTACTGTCTTGTTGCATGAAG
TGCAAAGGACGGGTCCTGGGTTAATTTCGACATCTCCGCACAGTAGCAGT
CTATTAGAACAGCAATGGTTTGAATAATACGTAATTGGAGCTGAGTAGAA
AGTTCTTTTTGATGTAAGTTGTACGTACtttcgttgttgttgttgagcaG
TACACGAGTCagtcaatgtaaacaaaagaatcaggagtaaaatgttcatt
ttttccatttcctGTTGACGTTTAGGATGGAAAATACACCAGA Run BLAST on NCBI protein sequence of TCONS_00034887-protein >TCONS_00034887-protein ID=TCONS_00034887-protein|Name=TCONS_00034887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
WCIFHPKRQQEMEKMNILLLILLFTLTDSCTAQQQQRKYVQLTSKRTFYS
APITYYSNHCCSNRLLLCGDVEINPGPVLCTSCNKTVRINSKRLECITCK
EQLKCARAHIRIENSRIPYQWTCHTCTLVIQPFFNIRNFEDLDASADHIP
NDFVSPSVALLNQHRKHLSVAAHLNTQSMASTFTEFESYVSEHQIDIIKM
S Run BLAST on NCBI transcript from alignment at sc0001229:40513..41505 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034887 ID=TCONS_00034887|Name=TCONS_00034887|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0001229:40513..41505 (Clytia hemisphaerica)
TCTGGTGTATTTTCCATCCTAAACGTCAACaggaaatggaaaaaatgaac
attttactcctgattcttttgtttacattgactGACTCGTGTACtgctca
acaacaacaacgaaaGTACGTACAACTTACATCAAAAAGAACTTTCTACT
CAGCTCCAATTACGTATTATTCAAACCATTGCTGTTCTAATAGACTGCTA
CTGTGCGGAGATGTCGAAATTAACCCAGGACCCGTCCTTTGCACTTCATG
CAACAAGACAGTAAGAATCAACTCCAAGCGACTCGAATGTATAACATGCA
AAGAACAGCTCAAATGCGCACGCGCGCACATACGTATAGAAAACTCCCGC
ATACCGTATCAATGGACCTGTCATACGTGCACATTGGTCATCCAACCGTT
CTTCAACATTCGAAACTTTGAAGATCTGGACGCCTCTGCCGACCATATTC
CTAACGATTTTGTCAGTCCATCAGTTGCTCTGCTGAACCAGCACCGTAAA
CATCTATCCGTAGCCGCCCATCTCAACACCCAATCTATGGCATCTACCTT
TACCGAATTCGAATCATACGTCTCAGAGCACCAAATCGACATCATCAAAA
TGTCCTAGACCTGGTTGAAAGACAACAAGAACCTTTTATCGCACCTTGAA
ATAGATGGCTACGAAAAAGACTTTCGAAACCGAGATGCTAAAGATGGCGG
TGGTGTCGGATACTACATCAAAACAGACATCAAACACAAAGCCCGTAAAG
ATATTTAATCCTTTGACACAACTATCGAACACCAGTGGATTGAATTGACT
GGCAAGAACCGTCTCTCGAATGTCTTGATTGGCATTGTGTATCAGCCAAG
CagtaaacaaaatgaaaaacttgagTGGCTCAACAAATTCGAATCACTTG
TTTCCCAAGCCGCAATTGTTCATCATGGTCCAATAATAATTACAGGTGAC
TTTAACATCGATTTACTTGTACCGTCACCAGCAAACGAAGCNN Coding sequence (CDS) from alignment at sc0001229:40513..41505 >TCONS_00034887 ID=TCONS_00034887|Name=TCONS_00034887|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0001229:40513..41505 (Clytia hemisphaerica)
TGGTGTATTTTCCATCCTAAACGTCAACaggaaatggaaaaaatgaacat
tttactcctgattcttttgtttacattgactGACTCGTGTACtgctcaac
aacaacaacgaaaGTACGTACAACTTACATCAAAAAGAACTTTCTACTCA
GCTCCAATTACGTATTATTCAAACCATTGCTGTTCTAATAGACTGCTACT
GTGCGGAGATGTCGAAATTAACCCAGGACCCGTCCTTTGCACTTCATGCA
ACAAGACAGTAAGAATCAACTCCAAGCGACTCGAATGTATAACATGCAAA
GAACAGCTCAAATGCGCACGCGCGCACATACGTATAGAAAACTCCCGCAT
ACCGTATCAATGGACCTGTCATACGTGCACATTGGTCATCCAACCGTTCT
TCAACATTCGAAACTTTGAAGATCTGGACGCCTCTGCCGACCATATTCCT
AACGATTTTGTCAGTCCATCAGTTGCTCTGCTGAACCAGCACCGTAAACA
TCTATCCGTAGCCGCCCATCTCAACACCCAATCTATGGCATCTACCTTTA
CCGAATTCGAATCATACGTCTCAGAGCACCAAATCGACATCATCAAAATG
TCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034887-exon-sc0001229-1491911889:40513..41505 | TCONS_00034887-exon-sc0001229-1491911889:40513..41505 | Clytia hemisphaerica | exon |
| TCONS_00034887-exon-sc0001229-1510915933:40513..41505 | TCONS_00034887-exon-sc0001229-1510915933:40513..41505 | Clytia hemisphaerica | exon |
| TCONS_00034887-exon-sc0001229-1575043694:40513..41505 | TCONS_00034887-exon-sc0001229-1575043694:40513..41505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001229 | supercontig | sc0001229:40513..41505 . |
Blast
The following BLAST results are available for this feature:
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