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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034886 ID=TCONS_00034886|Name=TCONS_00034886|organism=Clytia hemisphaerica|type=transcript|length=1014bp
CTTTTTTATCTATTAATTTAGGTACAGACTATTTTTATCtttaattttca
attcataCGTTATTAACTCTCATACTAGAATAATGCATAATCAAGTTGAT
GATCTTTAGTTATAAACAGTATTTTCGTAGCGTAAGATGCGTCTTTTCTT
GCACTATATTACTTTTCGCatttttcaactgtttttcTATCGTTTGTTCA
AATtgtcaatttctttttccaaaTGGATAGCCATTTACCATGGCTTTTTG
TGTTGGCCGTGTTTCACACAGTTTCCAAGATTAGAGACACGACCTTTTAT
GAACGTAAGGTGACGTATCAGCAAAGTTGCGAGGCCAACTGATATCTTTA
ATATTGCCTAAGCATTCAATGTCCgcattttcatttcattcaatATCAAA
TTTAATTGTCACTGTATCATTATACTGAATATTCGATAATCTTCCTTGAT
TGATGAAGAAAATGGCTCCAACACTACCACTCATGATGCATTCTCCATGG
GGTGTTTCGTAAAGCTTGAGAAACATTTGATCATAGGAACTTTTAGTAAT
ATCCCAGTCCACCAATATACCATTTACCAAAAGtctcattttgattgttt
tgaattGCATTGGCCATTGGTTCGTGTCATCAAAAGGCCCCTTACTTATC
CACAATGACACAGTAACGTGAGTCTTCTTCTCGGAAATTTGACGGCTGAA
ATTCAAGCGCAGCAATGCTTTGTATgtaccaaaaacaaagaaagacgGTG
ATTCTGTAACGGTGTTGAATTCTTTGAATTCCTGGAATTTCTGCTGTAGG
TTGGGTATAGTCCATACGAAAGTGCTTTGAAGGATTTTCTCACAACTTCT
CAGCTTTCTTTCTGCACAgtgattttcactttcactCTTTTTTTCTCGTT
GCTGCATTTCGCTCTCATCATGTGATCTTTCtgtatcaacattttcaatt
aCAGGTTTCGATCCAGTCTTGATCCTGTTGATCTTCTTTTTGCTTTTGAA
CACATCAAATCCCA Run BLAST on NCBI protein sequence of TCONS_00034886-protein >TCONS_00034886-protein ID=TCONS_00034886-protein|Name=TCONS_00034886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
GFDVFKSKKKINRIKTGSKPVIENVDTERSHDESEMQQREKKSESENHCA
ERKLRSCEKILQSTFVWTIPNLQQKFQEFKEFNTVTESPSFFVFGTYKAL
LRLNFSRQISEKKTHVTVSLWISKGPFDDTNQWPMQFKTIKMRLLVNGIL
VDWDITKSSYDQMFLKLYETPHGECIMSGSVGAIFFINQGRLSNIQYNDT
VTIKFDIE Run BLAST on NCBI transcript from alignment at sc0001229:29698..30711 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034886 ID=TCONS_00034886|Name=TCONS_00034886|organism=Clytia hemisphaerica|type=transcript|length=1014bp|location=Sequence derived from alignment at sc0001229:29698..30711 (Clytia hemisphaerica)
TGGGATTTGATGTGTTCAAAAGCAAAAAGAAGATCAACAGGATCAAGACT
GGATCGAAACCTGtaattgaaaatgttgatacaGAAAGATCACATGATGA
GAGCGAAATGCAGCAACGAGAAAAAAAGagtgaaagtgaaaatcacTGTG
CAGAAAGAAAGCTGAGAAGTTGTGAGAAAATCCTTCAAAGCACTTTCGTA
TGGACTATACCCAACCTACAGCAGAAATTCCAGGAATTCAAAGAATTCAA
CACCGTTACAGAATCACcgtctttctttgtttttggtacATACAAAGCAT
TGCTGCGCTTGAATTTCAGCCGTCAAATTTCCGAGAAGAAGACTCACGTT
ACTGTGTCATTGTGGATAAGTAAGGGGCCTTTTGATGACACGAACCAATG
GCCAATGCaattcaaaacaatcaaaatgagaCTTTTGGTAAATGGTATAT
TGGTGGACTGGGATATTACTAAAAGTTCCTATGATCAAATGTTTCTCAAG
CTTTACGAAACACCCCATGGAGAATGCATCATGAGTGGTAGTGTTGGAGC
CATTTTCTTCATCAATCAAGGAAGATTATCGAATATTCAGTATAATGATA
CAGTGACAATTAAATTTGATattgaatgaaatgaaaatgcGGACATTGAA
TGCTTAGGCAATATTAAAGATATCAGTTGGCCTCGCAACTTTGCTGATAC
GTCACCTTACGTTCATAAAAGGTCGTGTCTCTAATCTTGGAAACTGTGTG
AAACACGGCCAACACAAAAAGCCATGGTAAATGGCTATCCAtttggaaaa
agaaattgacaATTTGAACAAACGATAgaaaaacagttgaaaaatGCGAA
AAGTAATATAGTGCAAGAAAAGACGCATCTTACGCTACGAAAATACTGTT
TATAACTAAAGATCATCAACTTGATTATGCATTATTCTAGTATGAGAGTT
AATAACGtatgaattgaaaattaaaGATAAAAATAGTCTGTACCTAAATT
AATAGATAAAAAAG Coding sequence (CDS) from alignment at sc0001229:29698..30711 >TCONS_00034886 ID=TCONS_00034886|Name=TCONS_00034886|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0001229:29698..30711 (Clytia hemisphaerica)
GGATTTGATGTGTTCAAAAGCAAAAAGAAGATCAACAGGATCAAGACTGG
ATCGAAACCTGtaattgaaaatgttgatacaGAAAGATCACATGATGAGA
GCGAAATGCAGCAACGAGAAAAAAAGagtgaaagtgaaaatcacTGTGCA
GAAAGAAAGCTGAGAAGTTGTGAGAAAATCCTTCAAAGCACTTTCGTATG
GACTATACCCAACCTACAGCAGAAATTCCAGGAATTCAAAGAATTCAACA
CCGTTACAGAATCACcgtctttctttgtttttggtacATACAAAGCATTG
CTGCGCTTGAATTTCAGCCGTCAAATTTCCGAGAAGAAGACTCACGTTAC
TGTGTCATTGTGGATAAGTAAGGGGCCTTTTGATGACACGAACCAATGGC
CAATGCaattcaaaacaatcaaaatgagaCTTTTGGTAAATGGTATATTG
GTGGACTGGGATATTACTAAAAGTTCCTATGATCAAATGTTTCTCAAGCT
TTACGAAACACCCCATGGAGAATGCATCATGAGTGGTAGTGTTGGAGCCA
TTTTCTTCATCAATCAAGGAAGATTATCGAATATTCAGTATAATGATACA
GTGACAATTAAATTTGATattgaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034886-exon-sc0001229-1491911889:29698..30711 | TCONS_00034886-exon-sc0001229-1491911889:29698..30711 | Clytia hemisphaerica | exon |
| TCONS_00034886-exon-sc0001229-1510915933:29698..30711 | TCONS_00034886-exon-sc0001229-1510915933:29698..30711 | Clytia hemisphaerica | exon |
| TCONS_00034886-exon-sc0001229-1575043694:29698..30711 | TCONS_00034886-exon-sc0001229-1575043694:29698..30711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001229 | supercontig | sc0001229:29698..30711 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008974 | TRAF-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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