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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034874 ID=TCONS_00034874|Name=TCONS_00034874|organism=Clytia hemisphaerica|type=transcript|length=691bp
ATATCATCAGATTGTGACAACTACATGAATTTCGCTGCTTTTTGGACGTT
CTTTGGGTTACTTCAACCTAATGAACGTCATGAGTTTTCAACATGGTGGA
CGGAGAAGTGGAGCTCAGAAATTTACCTTCCTGAAGAATCAGAGATGTGG
AACTTCATTGTCAATCCTGACACTCATATTTTTCAAAGTGTCTACGATTT
CATGAAAGTTACAATTTCGTTCAAGAAGGAATTTATTTGagcaTAAGTTA
TCTAGTGACCGCGCTTATTGATAACGGAACGTCGATCATCCTCAGCGGAG
CGTACGGAAGCGGTAAAGCATCTCTCTTCCGTGACGAATATCTTCACAAC
AAGCCTGAGGGCACCGACATTAGTGTCTTATTGATCCAGGCTAACGAGTT
TTTAACGTGTGAATCTTTATGGATTGAATCAAGTGTTAGAATGGAAACAT
TCGGATTATTATGAACCGATCGGGAATAAGAAATTTGTTTGTTTCATCAA
AGATCTGCATAACCTTCAGCATCACCCGGAGCCAGTGTTATATCTATTAC
AACAACTCATCAAACATAATAGCGCATACAACCCATACCGTAAACAAACA
CAATCGCTAGGAGAAATCACCTTCGTCTTGACAACAACACAAGAAAATGA
TTACCTTCGAGATATGGTGAACTTTATACCGGTCATCAAAT Run BLAST on NCBI transcript from alignment at sc0001229:49019..52379+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034874 ID=TCONS_00034874|Name=TCONS_00034874|organism=Clytia hemisphaerica|type=transcript|length=3361bp|location=Sequence derived from alignment at sc0001229:49019..52379+ (Clytia hemisphaerica)
ATATCATCAGATTGTGACAACTACATGAATTTCGCTGCTTTTTGGACGTT
CTTTGGGTTACTTCAACCTAATGAACGTCATGAGTTTTCAACATGGTGGA
CGGAGAAGTGGAGCTCAGAAATTTACCTTCCTGAAGAATCAGAGGTAATT
ACATGGTTTTTTATATTTACACAGAATTTGGCTTAAAATTAAGGCTACTT
TAGTTTCAATTTACAAgccatagtgtgcaagggggttccaggtcccacct
gaaaattcaggtcccaccttatcctaaaattcccaccttcatcccagact
cccagatcccagctaaaaacaaaaaaaatattctaattcgaggaacaaaa
caaaatttctttacaaaatttctaacTTGAATCAATATACAATAGGGGta
ttgtttaccgaaagaaaatttttcttaacaGAACCCGtcttttgcttcgt
acattacggtccacAAAacattgttcgtcaatatacgattatgattgtta
aaaataagagcaaaaatatttcttgcgTATTGTTCACATTATGTAAGTCt
agtttttatcattattttactGGGGTAATTATGGGGgtgggtttcatggt
tggcggaggagcggaatcggcccttttttcggacggagtggcggaatttg
gcgaaaatttagacagaattacggaaattggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNaatttagcaaaaaaatttgcggaatt
tcggaattggtaaaagatattcaaaatttgcggaattttcgacaaaaata
ttgaatttcaaaggaattttcggtgacgaaattttggttcaatttaagac
ggtttgacggaaattggagaaagatttggcggaattgcggaatcggttac
cccctgaaccccccccccaattaTTCGTATATATATAGTTCCATTTCTTA
CATTTTGGTGCTTCTcaaaataccttattacactaaTATAACTACTCATG
TTATTAACGCGAATTGCTTACCTCGTGTTAATTACAAATGTTTAAACAGA
ATTCGAGCCGTGGCTATTTTCGAAAACCCTGCCTTTCGCGTTAATAAATT
CTCGCACTCATTTTACCCGCGTACTTTTACTTGACtagttatataagtgt
aataaggtaagcaaaagttgaaaaaatcattcttaaagatatttattcaa
ACATCAAATGACCTGTAATAACATATGTCTATggtaataataaaaagaaa
agtttagcATGgtaaaaaattttactttaactttttccaaaacacccaaa
gtcccacctaaagaaattaactcccaccttaacttgtttctcccacctaa
aacctggaaaaccccaaATCCCACCTGAAAATTTTCGACCCAAATCAGCA
AAACCCCCCCCCCACTATTCtgggggggggtgcacactatgcaAGCGCAC
TGTCGAATGAAGTCTGGGTTCTGATTTAGGCCCTTACAACAATACGCTAA
GCTTACTGTTAGGTGTTATATAAATAGAACAGCAGATGTATCCAAAAGCC
TCACTTGACTGAGATATTTTCGCTcttataattaaaaataaatctgAACT
TTTCCAGGAACTTCATTCAGTCGTTAGAAATTGTTCTAGAATAACTAACC
CAAACAATAGACGATACTCCTCTTAGTTATCATAATTCTTCATTTTGCTT
TCATTTaacttcaaatttttgcatGGGGCccaattttcaggatttcagaT
TCTATCcaaaataatagtttttgtcTATTTTGGTTATTATGTCACAATTT
CTCCTCGTAGATGTGGAACTTCATTGTCAATCCTGACACTCATATTTTTC
AAAGTGTCTACGATTTCATGAAAGTTACAATTTCGTTCAAGAAGGAATTT
ATTTGGTAAGTCATCTTCGTTGCTATTCGGTCActccgaaaaaaatataa
actgaTTTCGAAGAGGGTTGTCACTTTTATTATGTTATAACTAGGCAGGC
CCCTATTACCAATATACTTGACTTCCTTTGAAAAGATTACTAGCTGAGGA
AATATTTTGGTTTCGTCCGTTAGTCAAAACTTGATTAAAGGTCTATATTA
GTTCTGATCTGCTTCGTTTACCGTCAACTCCCTTATTGTAGCAAATTAAT
ATGTATGTGTTTTCCTGCGACATTGAAGGCTAGGTTTTGATTTGGCTATA
TCCTGACTGAGGACGACCTAAAACAAAGCCAGCGTGAAACAAGCCTCGTC
ATGCTTTCAAGCTTACGCATCTCTATGTCATTTCCTTTTTCGTtcgaata
ttttcattttcattcagcATGTTTCCGACAATCTATCTCAGGTGGGTcta
ttcagcatgttgcttttttttttttttttcagagcaTAAGTTATCTAGTG
ACCGCGCTTATTGATAACGGAACGTCGATCATCCTCAGCGGAGCGTACGG
AAGCGGTAAAGCATCTCTCTTCCGTGACGAATATCTTCACAACAAGCCTG
AGGGCACCGACATTAGTGTCTTATTGATCCAGGCTAACGAGTTTTTAACG
TGTGAATCTTTATGGATTGAATCAAGTGTTAGAATGGAAACATTCGGATT
ATTATGAACCGATCGGGAATAAGAAATTTGTTTGTTTCATCAAAGATCTG
CATAACCTTCAGGTAATAGGAAATTATGAAATAGTCTCTAATTCAACAGA
AAccaagaaaatacatttttccaATTAGCAACTTTAATACCCTACATATA
TTTGTACCACAGATATCATATTCCTTTACACACTAGATAAACTAACCGCA
GGTTTCCCGTGGAAGTGGGTCCAGTTTTGAAGTCGTGGAGTCTGCCatgt
tgttttctattttaccttgggttttcgaacgttcgaattttaaaacattc
gaatcacgcTGTTGACGACAAGatttgaaaacaagatggcggactagTCA
GCTCTAAAACTGGACACGCTTATTTTTATATGAGAAGCCCGATCTAGTCA
AGTAGTTAGGGATCAGTGATTTGTACTATTTCTTTCCAGCATCACCCGGA
GCCAGTGTTATATCTATTACAACAACTCATCAAACATAATAGCGCATACA
ACCCATACCGTAAACAAACACAATCGCTAGGAGAAATCACCTTCGTCTTG
ACAACAACACAAGAAAATGATTACCTTCGAGATATGGTGAACTTTATACC
GGTCATCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034874-exon-sc0001229-1491911889:49019..49162 | TCONS_00034874-exon-sc0001229-1491911889:49019..49162 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1510915933:49019..49162 | TCONS_00034874-exon-sc0001229-1510915933:49019..49162 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1575043694:49019..49162 | TCONS_00034874-exon-sc0001229-1575043694:49019..49162 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1491911889:50979..51073 | TCONS_00034874-exon-sc0001229-1491911889:50979..51073 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1510915933:50979..51073 | TCONS_00034874-exon-sc0001229-1510915933:50979..51073 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1575043694:50979..51073 | TCONS_00034874-exon-sc0001229-1575043694:50979..51073 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1491911889:51551..51830 | TCONS_00034874-exon-sc0001229-1491911889:51551..51830 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1510915933:51551..51830 | TCONS_00034874-exon-sc0001229-1510915933:51551..51830 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1575043694:51551..51830 | TCONS_00034874-exon-sc0001229-1575043694:51551..51830 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1491911889:52208..52379 | TCONS_00034874-exon-sc0001229-1491911889:52208..52379 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1510915933:52208..52379 | TCONS_00034874-exon-sc0001229-1510915933:52208..52379 | Clytia hemisphaerica | exon |
| TCONS_00034874-exon-sc0001229-1575043694:52208..52379 | TCONS_00034874-exon-sc0001229-1575043694:52208..52379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001229 | supercontig | sc0001229:49019..52379 + |
Blast
The following BLAST results are available for this feature:
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