TCONS_00034871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034871
Unique NameTCONS_00034871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034871 ID=TCONS_00034871|Name=TCONS_00034871|organism=Clytia hemisphaerica|type=transcript|length=1340bp
gttttttttaacaaattctttaattaagttatttccaaaattgataaaat
taaAGAACACCAAATTACTAATAAACCAACTTGGAtagtaaaaaatgtaa
aataaaaggtatgttttggtttttatgtaaagaaaaaaaaacatgaaaat
cttGATATAGCCTAGCATCCCATCAACATTGAAACAATGGAGTGAAAGGT
GTTTACAGTGACATCTATATTAATGAGTGCGCAAAGATTATTATCCTACA
ACAGTGACATATCCCTCGTCAAATTTCGATCCTCTCACTATCCTAGTCAT
CTTTGGATCAGGGACAACTCCATTAGGATTTTTGGTTGAATGATCTTCAT
ACCAAACTGAAACTCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGTT
CCTTTCTTCAATGGCAGAGATTCGTGAGGTGTACGGTCATTGATCCAATA
GAGAATATCAGATTTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAAT
GCTCAATATCTCCATGTTTGCGAATCAACTCCTCACCATTATTGTCAGCA
ACAATCTGACAATCCCAAACTTTACAAGAATCATCAACATTGGATGCCAT
ATAAATACCACCATTAGGGAAATGATGACTGTTGTATCCAAGCTTTCCCC
ACCAAACACCAAGAGCCATGATTTTGTCATGACCAGAACCCTTTTCAATG
CATAACTCCTCACACTTTTCATCACTTAAATCATTCTTAACATAAATAAA
ACCAGGAGATTCAGTATGTAGACCTGGTCTCCGCTGAGATTTACCTTCCT
CGACCAAACTCTCATGAATTGTTAGATAACCGATTTTACCAAATTCCTCT
ATGTCAAAAAAGGGAAGTTCATTAAAGAACGCAGTTTCAATCATATCAGA
ATATGGTTTGAGATAATCTGGCAATTGCatgttttcaaatttctttgccA
TGACAAAAGGCATCATGTTGATATTGATATCAGTTGGTTTGGGGAATTTC
ACATCAAATCGAAGTCGAAAGCCAGTTTGGGCTATGAATGGTGGAGGTGG
GTTGTAATCTCGCTCATAATTCTCATCCTTTCCAAATTTAATATGCATAT
GCATTGCTACCAAAACTTTTTCCCATATCAACTTGACAACATGAGGCATA
CCATAAAGTTTAGAAAATTGACAATTCTCATCAGCAACACCTTGTAAAAT
GGTGCGCAACACAGGGTTTATTGGATTCTTTTTTTCTAACTTCAATTCAT
CCATTTTTCTATCTAATTCTGCCATTACAATGTTGAAGAAAGACCTACCT
AAAGGCTATAGTGtagtaaaaaaatagaaaaaatggcAAC
Run BLAST on NCBI

transcript from alignment at sc0001229:15720..20078+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034871 ID=TCONS_00034871|Name=TCONS_00034871|organism=Clytia hemisphaerica|type=transcript|length=4359bp|location=Sequence derived from alignment at sc0001229:15720..20078+ (Clytia hemisphaerica)
gttttttttaacaaattctttaattaagttatttccaaaattgataaaat
taaAGAACACCAAATTACTAATAAACCAACTTGGAtagtaaaaaatgtaa
aataaaaggtatgttttggtttttatgtaaagaaaaaaaaacatgaaaat
cttGATATAGCCTAGCATCCCATCAACATTGAAACAATGGAGTGAAAGGT
GTTTACAGTGACATCTATATTAATGAGTGCGCAAAGATTATTATCCTACA
ACAGTGACATATCCCTCGTCAAATTTCGATCCTCTCACTATCCTAGTCAT
CTTTGGATCAGGGACAACTCCATTAGGATTTTTGGTTGAATGATCTTCAT
ACCAAACTGAAACTCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGTT
CCTTTCTTCAATGGCAGAGATTCGTGAGGTGTACGGTCATTGATCCAATA
GAGAATATCAGATTTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAAT
GCTCAATATCTCCATGTTTGCGAATCAACTCCTCACCATTATTGTCAGCA
ACAATCTGACAATCCCAAACTTTACAAGAATCATCAACATTGGATGCCAT
ATAAATACCACCATTAGGGAAATGATGACTGTTGTATCCAAGCTTTCCCC
ACCAAACACCAAGAGCCATGATTTTGTCATGACCAGAACCCTTTTCAATG
CATAACTCCTCACACTTTTCATCACTTAAATCATTCTTAACATAAATAAA
ACCAGGAGATTCAGTATGTAGACCTGGTCTCCGCTGAGATTTACCTTCCT
CGACCAAACTCTCATGAATTGTTAGATAACCGATTTTACCAAATTCCTCT
ATGTCAAAAAAGGGAAGTTCATTAAAGAACGCAGTTTCAATCATATCAGA
ATATGGTTTGAGATAATCTGGCAATTGCatgttttcaaatttctttgccA
TGACAAAAGGCATCATGTTGATATTGATATCAGTTGGTTTGGGGAATTTC
ACATCAAATCGAAGTCGAAAGCCAGTTTGGGCTATGAATGGTGGAGGTGG
GTTGTAATCTCGCTCATAATTCTCATCCTTTCCAAATTTAATATGCATAT
GCATTGCTACCAAAACTTTTTCCCATATCAACTTGACAACATGAGGCATA
CCATAAAGTTTAGAAAATTGACAATTCTCATCAGCAACACCTTGTAAAAT
GGTGCGCAACACAGGGTTTATTGGATTCTTTTTTTCTAACTTCAATTCAT
CCATTTTTCTATCTAATTCTGCCATTACAATGTTGAAGAAAGGTCTTgaa
tcaaatttgtttttttaatattcttttgtttgtttctttcttttttgNAT
TTAATTCATCCATTTTTCTATCTAATTCTGCCATTACAATGTTGAAGGGT
CTTGaatcaaatttgttttaaatattcttttgtttgtttctttcttGCTT
GTATAcacaaataaagaaattatttcaatCTAAAGCCTAATTTTCTTTGA
TCATAGTAAGTAAGGAAACTTATCGATAACAATGTAAAACCAATAAATTT
ACATTGTAACTTGATTGCTATTTTGCATCActgtacaaaaaataaaaaca
aactaatgagccaatcctgaggtAAGCTTATAACAGACaaacggacagac
ggacaacggtcaaattaaaggacctccaggtaggtccaaaaattttcttt
acaaaaagatTTCTAATGAAATACAGTATAAATAATTATATTTATATAAA
AGCGAAAagtaaacaattctaaaaaaaacttgaatgcAGTGATGTCTGTA
TCACAAAGAGATTTAGGTTATATCTGCCAAAAGTTTTTAAGAAGAATATT
TGCCGAGGTCAAAAcgatttttagtatttttatatGCTACAGAATTGTAA
GCAAAAATGTAGTCAAATTTTGATAATTGAACGTTTGTTTAATAAATCTA
TATATTATATCTGTTCAAAACTGACACagtttgagaaaaagttttgatta
caataataaaaaaaaacagcattgaaaataccaaaaaacaaGAATGCTTT
GAAAGATGTTAAATCgataaaattattattttactgAAAACTATTATGTA
ATTACATTATAATCCatgatacaaataaattatcataaaatgttatatta
aaTAGTAGGGGACCGCCCTTGAGATTCATGAAATATGATGGGAATTACCA
CATTTAATTTattcgaaaaaagatattaCTTGAAGAGGAGTCTTGGAAAT
TACACCTGACAAAACTTTTTATAGTCAAAAAACGGGCACTACAATGGAAA
ACTCCCGACCCCCAAATTTGGGTCAaaatctttgagaaaaaaaataaatg
tgaTACCATTGGTTACGACTTTGaattatgaaaagaaaaaggcGCATCAG
TATAGTTGACataaattttgtcattttgactACTCAAAATCTCCAGTTTT
Tattaacataacttttgattgagtgaatcgattttaaaagttttaaagat
caaaatttaagttgagCTTTTCTCTATAGAATAGAAAAAGAATCAACTAA
AACTCTTTAACCATAAACTCACTATATCTTCACAatactgtatacttttt
ttggcgCACCCCCGGTATAATACTCCCTAAAATGGCATGATTTTCTTGAA
TTAGTTGGTCTGAAAAACgacataaaatataaaacaaatttcatttatta
ggcaataaaaaaatttaaggaTAACCCTAAATAAAGATTGAGCTTTCAAA
AATCACACAAAGAGTTGATAACCTTTCTTAACCTACAATAGTGACATAGT
TCTCAtcaaattttgaccctttcacTATCCTAGTCATCTTCGGATCAGGG
ACAACTCCATTAGGATTTTTGGTTGAATGATCTTCATACCAAACTGAAAC
TCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGATCCTTTCTTCAATG
GCAGAGATTCGTGAGGTGTACGATCAGTTATCCAATAGAGATAATTAGAT
TTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAATGCTCAATATCTCC
ATGTTTGCGAATCAACTCCTCGCCATTATTGTCAGTAACAATCTGACAAT
CCCAAACTTTACAAGAATCATCAACATTGGATGCCATATAAATACCACCA
TGAGGGACATCTATACTAGTGTAACCAAACTGTCCCCACGAAACAGGAAA
AGGGACGATTTCATCATAACCAGAACCCTTTTCAATGCACAACTCCTNGA
GGGACATCTATACTAGTGTAACTAAACTGTCCCCACGAAACAGGAAAAGG
GACGATTTCATCATAACCAGAACCCTTTTCAATGCACAACTCCTCACACT
TTtcatcacttaaaccattcttAACATAAATATAACCAGGAGATTCAGTA
TGTAAACCTGGTCTCCGCTGAGATTTACCTTCCTCGACCAAACTTTCATG
AATTGTTAGATAACCGATTTTACCCAATTCCTCTATGTGAAAAATGAGGG
GAACTTCTTTAAAGAACGCAGTTTCAATCATATCAGAATATGGTTTGAGA
TAATCTGGCAATTGCATGTTTTCAAATTGCTTTGCCATGACAAAAGGCAT
CATGTTGATATTGATATCAGTTGGTTTAGGGAATTTCACATTAAATCGAT
GCCGAAAGCCAGTTAGGGCTATGAATGGGTTGTAATCTTCCATATAATTC
TCAGTGGTCTTTCCAAAATTAATATGCATATGCATTGCTACCAAATATTT
TTCCCATATCAACTTGACAACATGAGGCATACCATAAAGTTTGGAAAATT
GACAATTATCATCAGCAACACCTTGTAAAATGGTGCGCAACACAGGGTTT
ATTGGATTCTTTTTTTCTAACTTCAATTCATCCATTTTTCTATCTAATTC
TGCCATTACAATGTTGAAGAAAGGTCTTgaatcaaatttgtttttttaat
attcttttgtttgtttctttcttttttgtatacaccgataaaaaaattta
cttaattttctttggtattattttctgatttttagttAGTCTGACAATTG
TTGccattttttccctttttttactACACTATAGCCTTTAGGTAGGTcta
ttcagcatgtagcttgttatttttgaaatatctattcctcctgtaatttt
ttttttcttcattcttaTTCTTCTCACAAAACAAATCATAAAAGTGATCG
AATTCGAATTTTCGAATCATGGAAAGAAAAATGTTACAATGTAAATTTAT
TGGTTTTACATTGTTTCTTTACTTTCTATGATGAAACATATACATAATAC
ATGCTGAATAGACCTACCTAAAGGCTATAGTGtagtaaaaaaatagaaaa
aatggcAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020288XLOC_020288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034871-exon-sc0001229-1491911889:15720..17011TCONS_00034871-exon-sc0001229-1491911889:15720..17011Clytia hemisphaericaexon
TCONS_00034871-exon-sc0001229-1510915933:15720..17011TCONS_00034871-exon-sc0001229-1510915933:15720..17011Clytia hemisphaericaexon
TCONS_00034871-exon-sc0001229-1575043694:15720..17011TCONS_00034871-exon-sc0001229-1575043694:15720..17011Clytia hemisphaericaexon
TCONS_00034871-exon-sc0001229-1491911889:20031..20078TCONS_00034871-exon-sc0001229-1491911889:20031..20078Clytia hemisphaericaexon
TCONS_00034871-exon-sc0001229-1510915933:20031..20078TCONS_00034871-exon-sc0001229-1510915933:20031..20078Clytia hemisphaericaexon
TCONS_00034871-exon-sc0001229-1575043694:20031..20078TCONS_00034871-exon-sc0001229-1575043694:20031..20078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001229supercontigsc0001229:15720..20078 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.63304	4.92131	2.65338	1.81221	6.55032	5.80297	4.2486	4.51151	5.17829	6.8572	4.99467	2.92612	6.07249	5.02786	3.35523	3.77415	4.72498	5.40584	7.13729	11.9044	4.53572	4.74392	7.818	7.51041	3.91282	2.75078	2.45249	1.49521	4.0279	4.65476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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