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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034871 ID=TCONS_00034871|Name=TCONS_00034871|organism=Clytia hemisphaerica|type=transcript|length=1340bp
gttttttttaacaaattctttaattaagttatttccaaaattgataaaat
taaAGAACACCAAATTACTAATAAACCAACTTGGAtagtaaaaaatgtaa
aataaaaggtatgttttggtttttatgtaaagaaaaaaaaacatgaaaat
cttGATATAGCCTAGCATCCCATCAACATTGAAACAATGGAGTGAAAGGT
GTTTACAGTGACATCTATATTAATGAGTGCGCAAAGATTATTATCCTACA
ACAGTGACATATCCCTCGTCAAATTTCGATCCTCTCACTATCCTAGTCAT
CTTTGGATCAGGGACAACTCCATTAGGATTTTTGGTTGAATGATCTTCAT
ACCAAACTGAAACTCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGTT
CCTTTCTTCAATGGCAGAGATTCGTGAGGTGTACGGTCATTGATCCAATA
GAGAATATCAGATTTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAAT
GCTCAATATCTCCATGTTTGCGAATCAACTCCTCACCATTATTGTCAGCA
ACAATCTGACAATCCCAAACTTTACAAGAATCATCAACATTGGATGCCAT
ATAAATACCACCATTAGGGAAATGATGACTGTTGTATCCAAGCTTTCCCC
ACCAAACACCAAGAGCCATGATTTTGTCATGACCAGAACCCTTTTCAATG
CATAACTCCTCACACTTTTCATCACTTAAATCATTCTTAACATAAATAAA
ACCAGGAGATTCAGTATGTAGACCTGGTCTCCGCTGAGATTTACCTTCCT
CGACCAAACTCTCATGAATTGTTAGATAACCGATTTTACCAAATTCCTCT
ATGTCAAAAAAGGGAAGTTCATTAAAGAACGCAGTTTCAATCATATCAGA
ATATGGTTTGAGATAATCTGGCAATTGCatgttttcaaatttctttgccA
TGACAAAAGGCATCATGTTGATATTGATATCAGTTGGTTTGGGGAATTTC
ACATCAAATCGAAGTCGAAAGCCAGTTTGGGCTATGAATGGTGGAGGTGG
GTTGTAATCTCGCTCATAATTCTCATCCTTTCCAAATTTAATATGCATAT
GCATTGCTACCAAAACTTTTTCCCATATCAACTTGACAACATGAGGCATA
CCATAAAGTTTAGAAAATTGACAATTCTCATCAGCAACACCTTGTAAAAT
GGTGCGCAACACAGGGTTTATTGGATTCTTTTTTTCTAACTTCAATTCAT
CCATTTTTCTATCTAATTCTGCCATTACAATGTTGAAGAAAGACCTACCT
AAAGGCTATAGTGtagtaaaaaaatagaaaaaatggcAAC Run BLAST on NCBI transcript from alignment at sc0001229:15720..20078+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034871 ID=TCONS_00034871|Name=TCONS_00034871|organism=Clytia hemisphaerica|type=transcript|length=4359bp|location=Sequence derived from alignment at sc0001229:15720..20078+ (Clytia hemisphaerica)
gttttttttaacaaattctttaattaagttatttccaaaattgataaaat
taaAGAACACCAAATTACTAATAAACCAACTTGGAtagtaaaaaatgtaa
aataaaaggtatgttttggtttttatgtaaagaaaaaaaaacatgaaaat
cttGATATAGCCTAGCATCCCATCAACATTGAAACAATGGAGTGAAAGGT
GTTTACAGTGACATCTATATTAATGAGTGCGCAAAGATTATTATCCTACA
ACAGTGACATATCCCTCGTCAAATTTCGATCCTCTCACTATCCTAGTCAT
CTTTGGATCAGGGACAACTCCATTAGGATTTTTGGTTGAATGATCTTCAT
ACCAAACTGAAACTCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGTT
CCTTTCTTCAATGGCAGAGATTCGTGAGGTGTACGGTCATTGATCCAATA
GAGAATATCAGATTTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAAT
GCTCAATATCTCCATGTTTGCGAATCAACTCCTCACCATTATTGTCAGCA
ACAATCTGACAATCCCAAACTTTACAAGAATCATCAACATTGGATGCCAT
ATAAATACCACCATTAGGGAAATGATGACTGTTGTATCCAAGCTTTCCCC
ACCAAACACCAAGAGCCATGATTTTGTCATGACCAGAACCCTTTTCAATG
CATAACTCCTCACACTTTTCATCACTTAAATCATTCTTAACATAAATAAA
ACCAGGAGATTCAGTATGTAGACCTGGTCTCCGCTGAGATTTACCTTCCT
CGACCAAACTCTCATGAATTGTTAGATAACCGATTTTACCAAATTCCTCT
ATGTCAAAAAAGGGAAGTTCATTAAAGAACGCAGTTTCAATCATATCAGA
ATATGGTTTGAGATAATCTGGCAATTGCatgttttcaaatttctttgccA
TGACAAAAGGCATCATGTTGATATTGATATCAGTTGGTTTGGGGAATTTC
ACATCAAATCGAAGTCGAAAGCCAGTTTGGGCTATGAATGGTGGAGGTGG
GTTGTAATCTCGCTCATAATTCTCATCCTTTCCAAATTTAATATGCATAT
GCATTGCTACCAAAACTTTTTCCCATATCAACTTGACAACATGAGGCATA
CCATAAAGTTTAGAAAATTGACAATTCTCATCAGCAACACCTTGTAAAAT
GGTGCGCAACACAGGGTTTATTGGATTCTTTTTTTCTAACTTCAATTCAT
CCATTTTTCTATCTAATTCTGCCATTACAATGTTGAAGAAAGGTCTTgaa
tcaaatttgtttttttaatattcttttgtttgtttctttcttttttgNAT
TTAATTCATCCATTTTTCTATCTAATTCTGCCATTACAATGTTGAAGGGT
CTTGaatcaaatttgttttaaatattcttttgtttgtttctttcttGCTT
GTATAcacaaataaagaaattatttcaatCTAAAGCCTAATTTTCTTTGA
TCATAGTAAGTAAGGAAACTTATCGATAACAATGTAAAACCAATAAATTT
ACATTGTAACTTGATTGCTATTTTGCATCActgtacaaaaaataaaaaca
aactaatgagccaatcctgaggtAAGCTTATAACAGACaaacggacagac
ggacaacggtcaaattaaaggacctccaggtaggtccaaaaattttcttt
acaaaaagatTTCTAATGAAATACAGTATAAATAATTATATTTATATAAA
AGCGAAAagtaaacaattctaaaaaaaacttgaatgcAGTGATGTCTGTA
TCACAAAGAGATTTAGGTTATATCTGCCAAAAGTTTTTAAGAAGAATATT
TGCCGAGGTCAAAAcgatttttagtatttttatatGCTACAGAATTGTAA
GCAAAAATGTAGTCAAATTTTGATAATTGAACGTTTGTTTAATAAATCTA
TATATTATATCTGTTCAAAACTGACACagtttgagaaaaagttttgatta
caataataaaaaaaaacagcattgaaaataccaaaaaacaaGAATGCTTT
GAAAGATGTTAAATCgataaaattattattttactgAAAACTATTATGTA
ATTACATTATAATCCatgatacaaataaattatcataaaatgttatatta
aaTAGTAGGGGACCGCCCTTGAGATTCATGAAATATGATGGGAATTACCA
CATTTAATTTattcgaaaaaagatattaCTTGAAGAGGAGTCTTGGAAAT
TACACCTGACAAAACTTTTTATAGTCAAAAAACGGGCACTACAATGGAAA
ACTCCCGACCCCCAAATTTGGGTCAaaatctttgagaaaaaaaataaatg
tgaTACCATTGGTTACGACTTTGaattatgaaaagaaaaaggcGCATCAG
TATAGTTGACataaattttgtcattttgactACTCAAAATCTCCAGTTTT
Tattaacataacttttgattgagtgaatcgattttaaaagttttaaagat
caaaatttaagttgagCTTTTCTCTATAGAATAGAAAAAGAATCAACTAA
AACTCTTTAACCATAAACTCACTATATCTTCACAatactgtatacttttt
ttggcgCACCCCCGGTATAATACTCCCTAAAATGGCATGATTTTCTTGAA
TTAGTTGGTCTGAAAAACgacataaaatataaaacaaatttcatttatta
ggcaataaaaaaatttaaggaTAACCCTAAATAAAGATTGAGCTTTCAAA
AATCACACAAAGAGTTGATAACCTTTCTTAACCTACAATAGTGACATAGT
TCTCAtcaaattttgaccctttcacTATCCTAGTCATCTTCGGATCAGGG
ACAACTCCATTAGGATTTTTGGTTGAATGATCTTCATACCAAACTGAAAC
TCTGTGTGTTACAAGCCTAAAAAACTGTCTGTATGATCCTTTCTTCAATG
GCAGAGATTCGTGAGGTGTACGATCAGTTATCCAATAGAGATAATTAGAT
TTTAAAAGTGTTGATTCTGGCAAGAAACATCGTAAATGCTCAATATCTCC
ATGTTTGCGAATCAACTCCTCGCCATTATTGTCAGTAACAATCTGACAAT
CCCAAACTTTACAAGAATCATCAACATTGGATGCCATATAAATACCACCA
TGAGGGACATCTATACTAGTGTAACCAAACTGTCCCCACGAAACAGGAAA
AGGGACGATTTCATCATAACCAGAACCCTTTTCAATGCACAACTCCTNGA
GGGACATCTATACTAGTGTAACTAAACTGTCCCCACGAAACAGGAAAAGG
GACGATTTCATCATAACCAGAACCCTTTTCAATGCACAACTCCTCACACT
TTtcatcacttaaaccattcttAACATAAATATAACCAGGAGATTCAGTA
TGTAAACCTGGTCTCCGCTGAGATTTACCTTCCTCGACCAAACTTTCATG
AATTGTTAGATAACCGATTTTACCCAATTCCTCTATGTGAAAAATGAGGG
GAACTTCTTTAAAGAACGCAGTTTCAATCATATCAGAATATGGTTTGAGA
TAATCTGGCAATTGCATGTTTTCAAATTGCTTTGCCATGACAAAAGGCAT
CATGTTGATATTGATATCAGTTGGTTTAGGGAATTTCACATTAAATCGAT
GCCGAAAGCCAGTTAGGGCTATGAATGGGTTGTAATCTTCCATATAATTC
TCAGTGGTCTTTCCAAAATTAATATGCATATGCATTGCTACCAAATATTT
TTCCCATATCAACTTGACAACATGAGGCATACCATAAAGTTTGGAAAATT
GACAATTATCATCAGCAACACCTTGTAAAATGGTGCGCAACACAGGGTTT
ATTGGATTCTTTTTTTCTAACTTCAATTCATCCATTTTTCTATCTAATTC
TGCCATTACAATGTTGAAGAAAGGTCTTgaatcaaatttgtttttttaat
attcttttgtttgtttctttcttttttgtatacaccgataaaaaaattta
cttaattttctttggtattattttctgatttttagttAGTCTGACAATTG
TTGccattttttccctttttttactACACTATAGCCTTTAGGTAGGTcta
ttcagcatgtagcttgttatttttgaaatatctattcctcctgtaatttt
ttttttcttcattcttaTTCTTCTCACAAAACAAATCATAAAAGTGATCG
AATTCGAATTTTCGAATCATGGAAAGAAAAATGTTACAATGTAAATTTAT
TGGTTTTACATTGTTTCTTTACTTTCTATGATGAAACATATACATAATAC
ATGCTGAATAGACCTACCTAAAGGCTATAGTGtagtaaaaaaatagaaaa
aatggcAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034871-exon-sc0001229-1491911889:15720..17011 | TCONS_00034871-exon-sc0001229-1491911889:15720..17011 | Clytia hemisphaerica | exon |
| TCONS_00034871-exon-sc0001229-1510915933:15720..17011 | TCONS_00034871-exon-sc0001229-1510915933:15720..17011 | Clytia hemisphaerica | exon |
| TCONS_00034871-exon-sc0001229-1575043694:15720..17011 | TCONS_00034871-exon-sc0001229-1575043694:15720..17011 | Clytia hemisphaerica | exon |
| TCONS_00034871-exon-sc0001229-1491911889:20031..20078 | TCONS_00034871-exon-sc0001229-1491911889:20031..20078 | Clytia hemisphaerica | exon |
| TCONS_00034871-exon-sc0001229-1510915933:20031..20078 | TCONS_00034871-exon-sc0001229-1510915933:20031..20078 | Clytia hemisphaerica | exon |
| TCONS_00034871-exon-sc0001229-1575043694:20031..20078 | TCONS_00034871-exon-sc0001229-1575043694:20031..20078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001229 | supercontig | sc0001229:15720..20078 + |
Blast
The following BLAST results are available for this feature:
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