TCONS_00034864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034864
Unique NameTCONS_00034864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034864 ID=TCONS_00034864|Name=TCONS_00034864|organism=Clytia hemisphaerica|type=transcript|length=1690bp
CTTGCTAGATACACTTTACAAATTTATTCAGTTATTATCagaattcaaaa
atttccaaattgtgTTCCTATTTTATGACGTTGGTATTTCTCTGAGCTAC
CATTATGCTTTTTCTGCAACGTCGGCTGGTGTGCTTTGAGGTTTCAGTAG
GGTGTCGTTAGCGTCGGCCGGCGGTGATGAGCGTCGCCTTCTGATACAAA
TGAAAATTGCCACCGCAATGAGAATGACCAGAACGACGACTGCAATGATT
ATATACATGGTCATGCCATCATCTTTGCCTGAATCATCTTTCTTAGGAGC
TGGGGCTGGAGTTGGTGGCTCGGTAGTAGGAACAGCAGTAGTGGtcgtgg
tcgttgttgttgttacTTGGTGTTGGCAACGGTCGCCTGTATATTCTGCA
GTACATTCACAACCGTGTTCTGTGTCACTAATAGCAACACATTTCGCATC
ATTCAAACATGTGTTGTTAAGATCACAAACAGTGCAACCAAGATCTTTAT
TAACGGTGGCAACATTCATACTCTGTAGTTGTGTTCCTTTTAAATTATCC
GGTGTATCGCACGCGCCATTGATCTTTTTCAATTTATCTTGATTAGCAGC
TGCTTGAATAAACTTGGCCATTAGACATGTACAATCCAAGGGATTTCCTG
TGAAATCCATCAAACTAACTGAATTAACGATTTTTACCGGTATGCTTTTC
AActgattttcagaaatttgcaaaaatccaATTTCAACTTGATCAAAGGC
TGATGGATCAATATTGGTGATTTTATTCTTGTTGAATGTGATCTTACGCA
CGTTTTGTCCTGCTTTGAATAAACCAGCTCCAATATCTTCAATCATGTTC
TCTTGAAGTAAAATTTGTCCATTGTTCAATGAATTGAAAACTCCAGGCTT
TAGTACATTGATTTTATTGGAGCCTAATGCTAAAAGCGATAGACTATCGA
GTCCATTAAAAGCATCTGGTGAAATATCTTCAATTGAATTTCTGGTTACA
AAGATCACTTTAAGTTTTCCATTAGAGACGAAAGTGCTAGGACCAATACT
CGTCAATTTATTCCCATCCAAATTCAGTTTGGTTAAATCTTTCAAACCAG
CAAAATCTGATGCTTTGATCTCAGTAATTTGGTTATCAATGAGATTGAGA
TTAACCAGAGCTGGGAAAACACCAGAAAGATTTTGTGGTACTTCTTTCAA
CTGATTAGCTTGAACGTGGAGTTGTTGTAAATTCGGTAAAACTCTTGCGA
ATAGACTTGTATCGATTGTTGTAAGGTTACTCTCCCTtaacttgaaatat
ttcaattctctTGGAAgacttttgaacaatttttctaaTTCTGCTTTGGG
GACTTCGTTAGCCTTGCAGTCGATAATGGCGTTAGTAGCCCGACAGCTAC
AAAAAGACGGACAAGTGAATTCAGCATTGGCTTCAACCAAAAGTATAGCC
AGGATGGTCAAAACCAACATCTTTGGTTCGAGTTTCAAGAGAATGTATGA
AAGAAAGCCTTCGTCTACAACTGCTGCAAAACTTTTCTATAACCACACCT
TGTTATCTGTGCTTTAGTATAATACTAAAGAAAATTCTttgatcaagaaa
aaaaattttgttgtgtttttaGCAGTATATAAAATATAAGTTCAAtagct
tttctttttattttgttccCTATGTAAGAGATTTTATAAT
Run BLAST on NCBI

protein sequence of TCONS_00034864-protein

>TCONS_00034864-protein ID=TCONS_00034864-protein|Name=TCONS_00034864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MLVLTILAILLVEANAEFTCPSFCSCRATNAIIDCKANEVPKAELEKLFK
SLPRELKYFKLRESNLTTIDTSLFARVLPNLQQLHVQANQLKEVPQNLSG
VFPALVNLNLIDNQITEIKASDFAGLKDLTKLNLDGNKLTSIGPSTFVSN
GKLKVIFVTRNSIEDISPDAFNGLDSLSLLALGSNKINVLKPGVFNSLNN
GQILLQENMIEDIGAGLFKAGQNVRKITFNKNKITNIDPSAFDQVEIGFL
QISENQLKSIPVKIVNSVSLMDFTGNPLDCTCLMAKFIQAAANQDKLKKI
NGACDTPDNLKGTQLQSMNVATVNKDLGCTVCDLNNTCLNDAKCVAISDT
EHGCECTAEYTGDRCQHQVTTTTTTTTTAVPTTEPPTPAPAPKKDDSGKD
DGMTMYIIIAVVVLVILIAVAIFICIRRRRSSPPADANDTLLKPQSTPAD
VAEKA
Run BLAST on NCBI

transcript from alignment at sc0001227:33319..35008

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034864 ID=TCONS_00034864|Name=TCONS_00034864|organism=Clytia hemisphaerica|type=transcript|length=1690bp|location=Sequence derived from alignment at sc0001227:33319..35008 (Clytia hemisphaerica)
ATTATAAAATCTCTTACATAGggaacaaaataaaaagaaaagctaTTGAA
CTTATATTTTATATACTGCtaaaaacacaacaaaattttttttcttgatc
aaAGAATTTTCTTTAGTATTATACTAAAGCACAGATAACAAGGTGTGGTT
ATAGAAAAGTTTTGCAGCAGTTGTAGACGAAGGCTTTCTTTCATACATTC
TCTTGAAACTCGAACCAAAGATGTTGGTTTTGACCATCCTGGCTATACTT
TTGGTTGAAGCCAATGCTGAATTCACTTGTCCGTCTTTTTGTAGCTGTCG
GGCTACTAACGCCATTATCGACTGCAAGGCTAACGAAGTCCCCAAAGCAG
AAttagaaaaattgttcaaaagtcTTCCAagagaattgaaatatttcaag
ttaAGGGAGAGTAACCTTACAACAATCGATACAAGTCTATTCGCAAGAGT
TTTACCGAATTTACAACAACTCCACGTTCAAGCTAATCAGTTGAAAGAAG
TACCACAAAATCTTTCTGGTGTTTTCCCAGCTCTGGTTAATCTCAATCTC
ATTGATAACCAAATTACTGAGATCAAAGCATCAGATTTTGCTGGTTTGAA
AGATTTAACCAAACTGAATTTGGATGGGAATAAATTGACGAGTATTGGTC
CTAGCACTTTCGTCTCTAATGGAAAACTTAAAGTGATCTTTGTAACCAGA
AATTCAATTGAAGATATTTCACCAGATGCTTTTAATGGACTCGATAGTCT
ATCGCTTTTAGCATTAGGCTCCAATAAAATCAATGTACTAAAGCCTGGAG
TTTTCAATTCATTGAACAATGGACAAATTTTACTTCAAGAGAACATGATT
GAAGATATTGGAGCTGGTTTATTCAAAGCAGGACAAAACGTGCGTAAGAT
CACATTCAACAAGAATAAAATCACCAATATTGATCCATCAGCCTTTGATC
AAGTTGAAATtggatttttgcaaatttctgaaaatcagTTGAAAAGCATA
CCGGTAAAAATCGTTAATTCAGTTAGTTTGATGGATTTCACAGGAAATCC
CTTGGATTGTACATGTCTAATGGCCAAGTTTATTCAAGCAGCTGCTAATC
AAGATAAATTGAAAAAGATCAATGGCGCGTGCGATACACCGGATAATTTA
AAAGGAACACAACTACAGAGTATGAATGTTGCCACCGTTAATAAAGATCT
TGGTTGCACTGTTTGTGATCTTAACAACACATGTTTGAATGATGCGAAAT
GTGTTGCTATTAGTGACACAGAACACGGTTGTGAATGTACTGCAGAATAT
ACAGGCGACCGTTGCCAACACCAAgtaacaacaacaacgaccacgaCCAC
TACTGCTGTTCCTACTACCGAGCCACCAACTCCAGCCCCAGCTCCTAAGA
AAGATGATTCAGGCAAAGATGATGGCATGACCATGTATATAATCATTGCA
GTCGTCGTTCTGGTCATTCTCATTGCGGTGGCAATTTTCATTTGTATCAG
AAGGCGACGCTCATCACCGCCGGCCGACGCTAACGACACCCTACTGAAAC
CTCAAAGCACACCAGCCGACGTTGCAGAAAAAGCATAATGGTAGCTCAGA
GAAATACCAACGTCATAAAATAGGAAcacaatttggaaatttttgaattc
tGATAATAACTGAATAAATTTGTAAAGTGTATCTAGCAAG

Coding sequence (CDS) from alignment at sc0001227:33319..35008

>TCONS_00034864 ID=TCONS_00034864|Name=TCONS_00034864|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0001227:33319..35008 (Clytia hemisphaerica)
ATGTTGGTTTTGACCATCCTGGCTATACTTTTGGTTGAAGCCAATGCTGA
ATTCACTTGTCCGTCTTTTTGTAGCTGTCGGGCTACTAACGCCATTATCG
ACTGCAAGGCTAACGAAGTCCCCAAAGCAGAAttagaaaaattgttcaaa
agtcTTCCAagagaattgaaatatttcaagttaAGGGAGAGTAACCTTAC
AACAATCGATACAAGTCTATTCGCAAGAGTTTTACCGAATTTACAACAAC
TCCACGTTCAAGCTAATCAGTTGAAAGAAGTACCACAAAATCTTTCTGGT
GTTTTCCCAGCTCTGGTTAATCTCAATCTCATTGATAACCAAATTACTGA
GATCAAAGCATCAGATTTTGCTGGTTTGAAAGATTTAACCAAACTGAATT
TGGATGGGAATAAATTGACGAGTATTGGTCCTAGCACTTTCGTCTCTAAT
GGAAAACTTAAAGTGATCTTTGTAACCAGAAATTCAATTGAAGATATTTC
ACCAGATGCTTTTAATGGACTCGATAGTCTATCGCTTTTAGCATTAGGCT
CCAATAAAATCAATGTACTAAAGCCTGGAGTTTTCAATTCATTGAACAAT
GGACAAATTTTACTTCAAGAGAACATGATTGAAGATATTGGAGCTGGTTT
ATTCAAAGCAGGACAAAACGTGCGTAAGATCACATTCAACAAGAATAAAA
TCACCAATATTGATCCATCAGCCTTTGATCAAGTTGAAATtggatttttg
caaatttctgaaaatcagTTGAAAAGCATACCGGTAAAAATCGTTAATTC
AGTTAGTTTGATGGATTTCACAGGAAATCCCTTGGATTGTACATGTCTAA
TGGCCAAGTTTATTCAAGCAGCTGCTAATCAAGATAAATTGAAAAAGATC
AATGGCGCGTGCGATACACCGGATAATTTAAAAGGAACACAACTACAGAG
TATGAATGTTGCCACCGTTAATAAAGATCTTGGTTGCACTGTTTGTGATC
TTAACAACACATGTTTGAATGATGCGAAATGTGTTGCTATTAGTGACACA
GAACACGGTTGTGAATGTACTGCAGAATATACAGGCGACCGTTGCCAACA
CCAAgtaacaacaacaacgaccacgaCCACTACTGCTGTTCCTACTACCG
AGCCACCAACTCCAGCCCCAGCTCCTAAGAAAGATGATTCAGGCAAAGAT
GATGGCATGACCATGTATATAATCATTGCAGTCGTCGTTCTGGTCATTCT
CATTGCGGTGGCAATTTTCATTTGTATCAGAAGGCGACGCTCATCACCGC
CGGCCGACGCTAACGACACCCTACTGAAACCTCAAAGCACACCAGCCGAC
GTTGCAGAAAAAGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020282XLOC_020282Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034864-proteinTCONS_00034864-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034864-exon-sc0001227-1491911889:33319..35008TCONS_00034864-exon-sc0001227-1491911889:33319..35008Clytia hemisphaericaexon
TCONS_00034864-exon-sc0001227-1510915933:33319..35008TCONS_00034864-exon-sc0001227-1510915933:33319..35008Clytia hemisphaericaexon
TCONS_00034864-exon-sc0001227-1575043694:33319..35008TCONS_00034864-exon-sc0001227-1575043694:33319..35008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001227supercontigsc0001227:33319..35008 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.095821	0.0467203	0.0271234	0.026536	0.032305	0.0510557	0.123193	0.144165	0.0605599	0.100018	0.0728097	0.255265	2.70842	3.11054	0.884168	0.68609	95.4005	166.479	3.46324	4.13033	89.4258	82.7977	35.4869	47.1206	65.7653	52.7488	1.05112	0.911447	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR008465DAG1
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016010dystrophin-associated glycoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0007016cytoskeletal anchoring at plasma membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007016 cytoskeletal anchoring at plasma membrane
cellular_component GO:0016010 dystrophin-associated glycoprotein complex
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00034864 vs. Swiss-Prot (Human)
Match: LRR70 (Leucine-rich repeat-containing protein 70 OS=Homo sapiens GN=LRRC70 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.777e-16
Identity = 79/298 (26.51%), Postives = 143/298 (47.99%), Query Frame = -2 
Query:  511 RELKYFKLRESNLTTIDTSLFARVLPNLQQLHVQANQLKEVPQNL---------------------SGVFPALVNLNLID---NQITEIKASDFAGLKDLTKLNLDGNKLTSIGPSTFVSNGKLKVIFVTRNSIEDISPDAFNXXXXXXXXXXXSNKI-NVLKPGVFNSLNN-GQILLQENMIEDIGAGLFKAGQNVRKITFNKNKITNIDPSAFDQV--EIGFLQISENQLKSIPVKIVNSVS---LMDFTGNPLDCTCLMAKFIQAAANQDKLKKINGACDTPDNLKGTQLQSMNV 1311
            R L +  L  + +  +D  +F  +L NL+ L++Q NQ+  VP+ +                     SG F  +V L ++D   N I  I  S F  L++L  L L  N LT +  + F     L+ + ++ N IE I P AF GL +L  L L +++I NV + G F+ +NN   ++L  N +E++ +  F   +N+  +  ++N+I +ID   F+ +   +  L +S N L ++  +++  +S    +    NP +C C +       A+      +N  C  P +++G  L+ +N+
Sbjct:  108 RHLYFLFLNNNFIKRLDPGIFKGLL-NLRNLYLQYNQVSFVPRGVFNDLVSVQYLNLQRNRLTVLGSGTFVGMVALRILDLSNNNILRISESGFQHLENLACLYLGSNNLTKVPSNAFEVLKSLRRLSLSHNPIEAIQPFAFKGLANLEYLLLKNSRIRNVTRDG-FSGINNLKHLILSHNDLENLNSDTFSLLKNLIYLKLDRNRIISIDNDTFENMGASLKILNLSFNNLTALHPRVLKPLSSLIHLQANSNPWECNCKLLGLRDWLASSA--ITLNIYCQNPPSMRGRALRYINI 401
The following BLAST results are available for this feature:
BLAST of TCONS_00034864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRR702.777e-1626.51Leucine-rich repeat-containing protein 70 OS=Homo ... [more]
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