TCONS_00034864-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034864-protein
Unique NameTCONS_00034864-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034864-protein ID=TCONS_00034864-protein|Name=TCONS_00034864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MLVLTILAILLVEANAEFTCPSFCSCRATNAIIDCKANEVPKAELEKLFK
SLPRELKYFKLRESNLTTIDTSLFARVLPNLQQLHVQANQLKEVPQNLSG
VFPALVNLNLIDNQITEIKASDFAGLKDLTKLNLDGNKLTSIGPSTFVSN
GKLKVIFVTRNSIEDISPDAFNGLDSLSLLALGSNKINVLKPGVFNSLNN
GQILLQENMIEDIGAGLFKAGQNVRKITFNKNKITNIDPSAFDQVEIGFL
QISENQLKSIPVKIVNSVSLMDFTGNPLDCTCLMAKFIQAAANQDKLKKI
NGACDTPDNLKGTQLQSMNVATVNKDLGCTVCDLNNTCLNDAKCVAISDT
EHGCECTAEYTGDRCQHQVTTTTTTTTTAVPTTEPPTPAPAPKKDDSGKD
DGMTMYIIIAVVVLVILIAVAIFICIRRRRSSPPADANDTLLKPQSTPAD
VAEKA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020282XLOC_020282Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034864TCONS_00034864Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR008465DAG1
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016010dystrophin-associated glycoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0007016cytoskeletal anchoring at plasma membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007016 cytoskeletal anchoring at plasma membrane
cellular_component GO:0016010 dystrophin-associated glycoprotein complex
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 102..125
e-value: 15.0
score: 11.9
coord: 151..173
e-value: 72.0
score: 6.2
coord: 126..149
e-value: 0.1
score: 21.7
coord: 174..197
e-value: 2.1
score: 17.3
coord: 78..101
e-value: 0.27
score: 20.3
NoneNo IPR availableGENE3D1.20.5.100coord: 390..432
e-value: 2.3E-6
score: 26.7
NoneNo IPR availableGENE3D2.10.25.10coord: 329..370
e-value: 2.0E-4
score: 21.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..455
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..398
NoneNo IPR availableCDDcd00054EGF_CAcoord: 332..366
e-value: 2.10711E-4
score: 38.0014
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 332..374
IPR000742EGF-like domainPFAMPF00008EGFcoord: 332..364
e-value: 5.1E-5
score: 23.4
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 330..366
score: 11.631
IPR008465DystroglycanPFAMPF05454DAG1coord: 364..431
e-value: 7.2E-6
score: 25.5
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 129..187
e-value: 6.9E-15
score: 54.5
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 152..173
score: 5.764
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 104..125
score: 6.703
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 80..101
score: 5.479
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 128..149
score: 7.82
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 176..197
score: 5.132
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 223..244
score: 5.148
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 246..267
score: 4.932
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 16..175
e-value: 1.1E-29
score: 102.6
coord: 176..328
e-value: 3.7E-18
score: 64.9
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 21..289
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 354..365

Blast
[Close]
BLAST of TCONS_00034864-protein vs. Swiss-Prot (Human)
Match: LRR70 (Leucine-rich repeat-containing protein 70 OS=Homo sapiens GN=LRRC70 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.794e-21
Identity = 79/298 (26.51%), Postives = 143/298 (47.99%), Query Frame = 0 
Query:   54 RELKYFKLRESNLTTIDTSLFARVLPNLQQLHVQANQLKEVPQNL---------------------SGVFPALVNLNLID---NQITEIKASDFAGLKDLTKLNLDGNKLTSIGPSTFVSNGKLKVIFVTRNSIEDISPDAFNGLDSLSLLALGSNKI-NVLKPGVFNSLNN-GQILLQENMIEDIGAGLFKAGQNVRKITFNKNKITNIDPSAFDQV--EIGFLQISENQLKSIPVKIVNSVS---LMDFTGNPLDCTCLMAKFIQAAANQDKLKKINGACDTPDNLKGTQLQSMNV 320
            R L +  L  + +  +D  +F  +L NL+ L++Q NQ+  VP+ +                     SG F  +V L ++D   N I  I  S F  L++L  L L  N LT +  + F     L+ + ++ N IE I P AF GL +L  L L +++I NV + G F+ +NN   ++L  N +E++ +  F   +N+  +  ++N+I +ID   F+ +   +  L +S N L ++  +++  +S    +    NP +C C +       A+      +N  C  P +++G  L+ +N+
Sbjct:  108 RHLYFLFLNNNFIKRLDPGIFKGLL-NLRNLYLQYNQVSFVPRGVFNDLVSVQYLNLQRNRLTVLGSGTFVGMVALRILDLSNNNILRISESGFQHLENLACLYLGSNNLTKVPSNAFEVLKSLRRLSLSHNPIEAIQPFAFKGLANLEYLLLKNSRIRNVTRDG-FSGINNLKHLILSHNDLENLNSDTFSLLKNLIYLKLDRNRIISIDNDTFENMGASLKILNLSFNNLTALHPRVLKPLSSLIHLQANSNPWECNCKLLGLRDWLASSA--ITLNIYCQNPPSMRGRALRYINI 401
The following BLAST results are available for this feature:
BLAST of TCONS_00034864-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRR706.794e-2126.51Leucine-rich repeat-containing protein 70 OS=Homo ... [more]
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