TCONS_00034862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034862
Unique NameTCONS_00034862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034862 ID=TCONS_00034862|Name=TCONS_00034862|organism=Clytia hemisphaerica|type=transcript|length=340bp
ACCAGGACAACTCCAACGTAGGATAATAAACCGTACATCATATCAGATAA
TCTGATTCTTTCTTTTAACAATAACCAACCAAACAAAAAGCAAAATGCCG
GTAACGTGCCGAAAATAACTGCATTTGTACCCAAGTCAAGCCTTTTAACA
GCCATTTCCAAGAAAATGACACCAGCTAATCGTAAAATACCAGCGCTCAT
TAGATGTACTGTTTTCGTGAAACACTGTATAAGTGATATCCTTTCCATAA
GTATATTACTTGAGATGATGACTAAATTGACAGTATATCTAATCAATAAA
GCCTCGAATACACCAACTTTACTATGATTTAATGTATACT
Run BLAST on NCBI

protein sequence of TCONS_00034862-protein

>TCONS_00034862-protein ID=TCONS_00034862-protein|Name=TCONS_00034862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
YTLNHSKVGVFEALLIRYTVNLVIISSNILMERISLIQCFTKTVHLMSAG
ILRLAGVIFLEMAVKRLDLGTNAVIFGTLPAFCFLFGWLLLKERIRLSDM
MYGLLSYVGVVL
Run BLAST on NCBI

transcript from alignment at sc0001227:24896..25235

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034862 ID=TCONS_00034862|Name=TCONS_00034862|organism=Clytia hemisphaerica|type=transcript|length=340bp|location=Sequence derived from alignment at sc0001227:24896..25235 (Clytia hemisphaerica)
AGTATACATTAAATCATAGTAAAGTTGGTGTATTCGAGGCTTTATTGATT
AGATATACTGTCAATTTAGTCATCATCTCAAGTAATATACTTATGGAAAG
GATATCACTTATACAGTGTTTCACGAAAACAGTACATCTAATGAGCGCTG
GTATTTTACGATTAGCTGGTGTCATTTTCTTGGAAATGGCTGTTAAAAGG
CTTGACTTGGGTACAAATGCAGTTATTTTCGGCACGTTACCGGCATTTTG
CTTTTTGTTTGGTTGGTTATTGTTAAAAGAAAGAATCAGATTATCTGATA
TGATGTACGGTTTATTATCCTACGTTGGAGTTGTCCTGGT

Coding sequence (CDS) from alignment at sc0001227:24896..25235

>TCONS_00034862 ID=TCONS_00034862|Name=TCONS_00034862|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0001227:24896..25235 (Clytia hemisphaerica)
TATACATTAAATCATAGTAAAGTTGGTGTATTCGAGGCTTTATTGATTAG
ATATACTGTCAATTTAGTCATCATCTCAAGTAATATACTTATGGAAAGGA
TATCACTTATACAGTGTTTCACGAAAACAGTACATCTAATGAGCGCTGGT
ATTTTACGATTAGCTGGTGTCATTTTCTTGGAAATGGCTGTTAAAAGGCT
TGACTTGGGTACAAATGCAGTTATTTTCGGCACGTTACCGGCATTTTGCT
TTTTGTTTGGTTGGTTATTGTTAAAAGAAAGAATCAGATTATCTGATATG
ATGTACGGTTTATTATCCTACGTTGGAGTTGTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020280XLOC_020280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034862-proteinTCONS_00034862-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034862-exon-sc0001227-1491911889:24896..25235TCONS_00034862-exon-sc0001227-1491911889:24896..25235Clytia hemisphaericaexon
TCONS_00034862-exon-sc0001227-1510915933:24896..25235TCONS_00034862-exon-sc0001227-1510915933:24896..25235Clytia hemisphaericaexon
TCONS_00034862-exon-sc0001227-1575043694:24896..25235TCONS_00034862-exon-sc0001227-1575043694:24896..25235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001227supercontigsc0001227:24896..25235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.288599	0.348183	0.325964	0.228215	0	0	0.36073	0.55525	0.374101	0	0	0.203304	0.221109	0	0	0.785534	0	0.310517	0	0.290768	1.03801	0	0.396313	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000620EamA_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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