TCONS_00034858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034858
Unique NameTCONS_00034858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034858 ID=TCONS_00034858|Name=TCONS_00034858|organism=Clytia hemisphaerica|type=transcript|length=1733bp
GAGAAGTGTATTTATTTACGTTTTCGTAGAAAATCAAAGGCGGTCAGGGG
CGTTTAaaattattattactattaccGTTCTGTAAATTAGAGTTTTTGAG
AGTTTCGCGTGTtcataaaaatggtagattttgTTATTCGCATCACACGT
CGATCAAACCTGTTACAAGTCGTATTCTCGAAACTGCAATCTTCAAGATT
ATTAAAGTAATATGGCACCTAAGAAGAAGGCCCAAACGCATTCAGCAACC
ATTTCAGAGACGGACGATTTAATGGCTGTTGTTGATAAAGGTATTTTGAC
ATCGGTAAGACAAGGGATACAACCCCAATTAGGGCTCCAACAACAAGGGA
ACCAACAAAACCAAAGTTTACCACAACAGCAAGGGGCTCCATTAGCACAA
GGGGGCTACAATAGTAGGAAATACCTCAACAAGGTGATTTTTTCGAACCT
ATagcttttcagcaaaaatttttcaatctccTTGAAGACAAGTTTGACAG
GGCAGACGAAAAAAGGGGAAAAGacaattcttttttagaaactCAAATCA
ATactatgaaaaataaacaatctgTATACGACTTTGAAAATATATCAAAT
AAGCACCAATACAAGTTTGTTCAAAATATATACGAACTAAATAACGAGGC
AAAAGTTTTATCTTATGTGCTCGATAAAATTGAGGATCAATTAATTAAAC
GCAAGAAAATTATCAAGTACGTAGATAGTTCCATAGAAGGGTGGGACACA
ACCAATGAATATTTGCCCAANCACTTGAAAACAATTTTCGACACCCAGCA
CGCGTCACAGCAAGAGAGTTATATCTTGTGTAGCAGGGAAAAATAGTTTC
TATAAAATTCGTTTTAAGAAATGTTATTCGTCAAAAAACTCGTTTGATTT
ACAAAATTAATAGAATCCAGAGTGTCTTGGGATAAGAGaataaatttgac
attttatcACGACGTCCTTAGGGAATTGTTATTTTGGAAATTAAACTTGC
GTGTTTTGAATAAAAGATCAATAAGAAAATATGAAGTACCacagttaaaa
atattttcagatgctAGCGCCACGGGAATTGGAGCAATTTTAAATGATTA
TGTTTGTTACAAAAATTTTACAACAGATAGGTGAGTGGAAAGTTCTACGT
ACATGGAGTTATTGGCTATTAAATATGCCATGGAGTCATTTGACCAGTTT
TTAGACAATAAACCGATTTTGTGTCATACAAATAACATAAGTACAGCCAT
AATTGTCAGGATTTGCAAGAATTAAATTTGTTACAACAGTTGGCAAATGA
TGTATTTATGATTTGTAAGAGGAAAGATGTCAAATTGACAGTGACTTGGA
TTGCTCGAAAATACAACGAGAAAGCAGATGAAGTAAAACAGTAGATTATG
ACGACTGgtttataaaacaaaattttgcgaatgCGATACAGAAAATCGGG
GCGAAGTAACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGAT
CGGTTTTGTTCCAAGTATTTTTTCCCCGGAAGTTTTAANGAAAATTGGGG
CGAAGTAACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGATC
GGTTTTGTTCCAAGTATTTTTGCCCCGGAAGTTTCAAGACACAGATGCTT
TTTCCTTTGATTGGACAGGAGAATTTTGTCATATTGTATCACCCATCTAT
TTAATTCCCAAAGCAATTAAGCATTTTCTAGCT
Run BLAST on NCBI

transcript from alignment at sc0001227:4013..5745-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034858 ID=TCONS_00034858|Name=TCONS_00034858|organism=Clytia hemisphaerica|type=transcript|length=1733bp|location=Sequence derived from alignment at sc0001227:4013..5745- (Clytia hemisphaerica)
GAGAAGTGTATTTATTTACGTTTTCGTAGAAAATCAAAGGCGGTCAGGGG
CGTTTAAAATTATTATTACTATTACCGTTCTGTAAATTAGAGTTTTTGAG
AGTTTCGCGTGTTCATAAAAATGGTAGATTTTGTTATTCGCATCACACGT
CGATCAAACCTGTTACAAGTCGTATTCTCGAAACTGCAATCTTCAAGATT
ATTAAAGTAATATGGCACCTAAGAAGAAGGCCCAAACGCATTCAGCAACC
ATTTCAGAGACGGACGATTTAATGGCTGTTGTTGATAAAGGTATTTTGAC
ATCGGTAAGACAAGGGATACAACCCCAATTAGGGCTCCAACAACAAGGGA
ACCAACAAAACCAAAGTTTACCACAACAGCAAGGGGCTCCATTAGCACAA
GGGGGCTACAATAGTAGGAAATACCTCAACAAGGTGATTTTTTCGAACCT
ATAGCTTTTCAGCAAAAATTTTTCAATCTCCTTGAAGACAAGTTTGACAG
GGCAGACGAAAAAAGGGGAAAAGACAATTCTTTTTTAGAAACTCAAATCA
ATACTATGAAAAATAAACAATCTGTATACGACTTTGAAAATATATCAAAT
AAGCACCAATACAAGTTTGTTCAAAATATATACGAACTAAATAACGAGGC
AAAAGTTTTATCTTATGTGCTCGATAAAATTGAGGATCAATTAATTAAAC
GCAAGAAAATTATCAAGTACGTAGATAGTTCCATAGAAGGGTGGGACACA
ACCAATGAATATTTGCCCAANCACTTGAAAACAATTTTCGACACCCAGCA
CGCGTCACAGCAAGAGAGTTATATCTTGTGTAGCAGGGAAAAATAGTTTC
TATAAAATTCGTTTTAAGAAATGTTATTCGTCAAAAAACTCGTTTGATTT
ACAAAATTAATAGAATCCAGAGTGTCTTGGGATAAGAGAATAAATTTGAC
ATTTTATCACGACGTCCTTAGGGAATTGTTATTTTGGAAATTAAACTTGC
GTGTTTTGAATAAAAGATCAATAAGAAAATATGAAGTACCACAGTTAAAA
ATATTTTCAGATGCTAGCGCCACGGGAATTGGAGCAATTTTAAATGATTA
TGTTTGTTACAAAAATTTTACAACAGATAGGTGAGTGGAAAGTTCTACGT
ACATGGAGTTATTGGCTATTAAATATGCCATGGAGTCATTTGACCAGTTT
TTAGACAATAAACCGATTTTGTGTCATACAAATAACATAAGTACAGCCAT
AATTGTCAGGATTTGCAAGAATTAAATTTGTTACAACAGTTGGCAAATGA
TGTATTTATGATTTGTAAGAGGAAAGATGTCAAATTGACAGTGACTTGGA
TTGCTCGAAAATACAACGAGAAAGCAGATGAAGTAAAACAGTAGATTATG
ACGACTGGTTTATAAAACAAAATTTTGCGAATGCGATACAGAAAATCGGG
GCGAAGTAACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGAT
CGGTTTTGTTCCAAGTATTTTTTCCCCGGAAGTTTTAANGAAAATTGGGG
CGAAGTAACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGATC
GGTTTTGTTCCAAGTATTTTTGCCCCGGAAGTTTCAAGACACAGATGCTT
TTTCCTTTGATTGGACAGGAGAATTTTGTCATATTGTATCACCCATCTAT
TTAATTCCCAAAGCAATTAAGCATTTTCTAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020278XLOC_020278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034858-exon-sc0001227-1575043694:4013..5745TCONS_00034858-exon-sc0001227-1575043694:4013..5745Clytia hemisphaericaexon
TCONS_00034858-exon-sc0001227-1510915933:4013..5745TCONS_00034858-exon-sc0001227-1510915933:4013..5745Clytia hemisphaericaexon
TCONS_00034858-exon-sc0001227-1491911889:4013..5745TCONS_00034858-exon-sc0001227-1491911889:4013..5745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001227supercontigsc0001227:4013..5745 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.39839	8.812	5.02222	3.55669	0.170836	0.18106	0.191671	0.544984	0.117722	0.417899	0.714228	0.344158	0.318219	0.202224	0.920242	0.568291	0.177668	1.12648	1.85015	0.92231	0.902398	1.16267	2.75713	3.14175	0.0937881	0	1.83813	2.54197	3.599	2.76593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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