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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034856 ID=TCONS_00034856|Name=TCONS_00034856|organism=Clytia hemisphaerica|type=transcript|length=2626bp
GTGTATTTATTTACGTTTTCGTAGAAAATCAAAGGCGGTCAGGGGCGTTT
AaaattattattactattaccGTTCTGTAAATTAGAGTTTTTGAGAGTTT
CGCGTGTtcataaaaatggtagattttgTTATTCGCATCACACGTCGATC
AAACCTGTTACAAGTCGTATTCTCGAAACTGCAATCTTCAAGATTATTAA
AGTAATATGGCACCTAAGAAGAAGGCCCAAACGCATTCAGCAACCATTTC
AGAGACGGACGATTTAATGGCTGTTGTTGATAAAGGTATTTTGACATCGG
TAAGACAAGGGATACAACCCCAATTAGGGCTCCAACAACAAGGGAACCAA
CAAAACCAAAGTTTACCACAACAGCAAGGGGCTCCATTAGCACAAGGGGG
CTACAATAGTAGGAAATACCTCAACAAGGTGATTTTTTCGAACCTATagc
ttttcagcaaaaatttttcaatctccTTGAAGACAAGTTTGACAGGGCAG
ACGAAAAAAGGGGAAAAGacaattcttttttagaaactCAAATCAATact
atgaaaaataaacaatctgTATACGACTTTGAAAATATATCAAATAAGCA
CCAATACAAGTTTGTTCAAAATATATACGAACTAAATAACGAGGCAAAAG
TTTTATCTTATGTGCTCGATAAAATTGAGGATCAATTAATTAAACGCAAG
AAAATTATCAAGTACGTAGATAGTTCCATAGAAGGGTGGGACACAACCAA
TGAATATTTGCCCAANCACTTGAAAACAATTTTCGACACCCAGCACGCGT
CACAGCAAGAGAGTTATATCTTGTGTAGCAGGGAAAAATAGTTTCTATAA
AATTCGTTTTAAGAAATGTTATTCGTCAAAAAACTCGTTTGATTTACAAA
ATTAATAGAATCCAGAGTGTCTTGGGATAAGAGaataaatttgacatttt
atcACGACGTCCTTAGGGAATTGTTATTTTGGAAATTAAACTTGCGTGTT
TTGAATAAAAGATCAATAAGAAAATATGAAGTACCacagttaaaaatatt
ttcagatgctAGCGCCACGGGAATTGGAGCAATTTTAAATGATTATGTTT
GTTACAAAAATTTTACAACAGATAGGTGAGTGGAAAGTTCTACGTACATG
GAGTTATTGGCTATTAAATATGCCATGGAGTCATTTGACCAGTTTTTAGA
CAATAAACCGATTTTGTGTCATACAAATAACATAAGTACAGCCATAATTG
TCAGGATTTGCAAGAATTAAATTTGTTACAACAGTTGGCAAATGATGTAT
TTATGATTTGTAAGAGGAAAGATGTCAAATTGACAGTGACTTGGATTGCT
CGAAAATACAACGAGAAAGCAGATGAAattttaggaaaaacaaaCGCGTC
GATTACATGCTCAACAATCAGGGATGAGTTGAAACAAATTTTGGAATTCG
TGGTTTATCACAANCCAATTGTAGATTAAAGAATTCGATTATCGATTAAT
TTCATACATTTTCAGGTTGCAAACATTTCAAATTGCATACGTTTTCAAAT
TGCTTACGTTTTCAAGTTGTATACGTTTTCAGTTGTATACGTTTTCAAGT
TGTATACGTTTTCAGTTGTATACGTTTTCAAGTTGTATACGTTTTCAGGT
TGTATACGTTTCGGGTTACATACGTTTTCGGGTTGTATACGTTTTCGGGT
CACATACGTTTCGGGTCACAAACGTTTTCGGGTTACATACGTTTTCAGGT
TGTATACGTTTTCGGGTTGTATAAGTTTCCAGGTTACATACGTTTTCAGG
TTGTATACGTTTTCGGGTCACATACGTTTTCAGGTTGTGTACGTTTTCGG
GTTGTATAAGTTTTCAGGTTACATACGTTTTCGGGTCACATATGTTTTCA
GGTTGTGTACGTTTTCGGGTTGTATAAGTTTTCAGGTTACATACGTTTTC
AGGTTACATGCGTTTTCAGGTTGTATACGTTTTCGGGTCACATACGTTTT
CAGGTTGTATACGTTTTCGGGTCACATACGTTTTCAAGTTGTATACGTTT
TCGGGTCACATACGTTTTCAAGTTGCATACGTTTTCGGGTTGTATACGTT
TTCAAGTTTATATGAATGGTTTCAAGttgttttattgaatttttaggGCT
CGAACTGCGACCCTCCACGGTTTTTGTTTCTAGCAGCCTAGTTCTCAGAG
ACAGTCAGGGCACCCAAATTGGCGAACCGGGGCTAGAAAGTGTTTTCATC
CGAGGGGGTCAAGGAACGAGAGTAgctgtattattttttaaacgtttttt
agaggattttagacTCCTAGGGCTACGAATAGGATTAGGACTAGGATTAT
GATTAGGATTAGGACTAGGACTAGGAGTAAAATTATAGTTAGAAATAGAA
CTAGGGATTAATatattttccatattttataAGATGTTTTTAGATATGAA
TACGACACAGGATTTGGTACGGCTCCTACTACTACTAGAATACATTAAAT
CTGTCTCGAAATCGAGATTTCGGTTGTTGTTTCATCGTGTTTTCAATTTt
cattgggTCTTTGACAAGATTTTAGAAGAATTaggaaataaattaattta
ttttcgtttcgtagataagaaaataa Run BLAST on NCBI transcript from alignment at sc0001227:2334..5740- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034856 ID=TCONS_00034856|Name=TCONS_00034856|organism=Clytia hemisphaerica|type=transcript|length=3407bp|location=Sequence derived from alignment at sc0001227:2334..5740- (Clytia hemisphaerica)
GTGTATTTATTTACGTTTTCGTAGAAAATCAAAGGCGGTCAGGGGCGTTT
AAAATTATTATTACTATTACCGTTCTGTAAATTAGAGTTTTTGAGAGTTT
CGCGTGTTCATAAAAATGGTAGATTTTGTTATTCGCATCACACGTCGATC
AAACCTGTTACAAGTCGTATTCTCGAAACTGCAATCTTCAAGATTATTAA
AGTAATATGGCACCTAAGAAGAAGGCCCAAACGCATTCAGCAACCATTTC
AGAGACGGACGATTTAATGGCTGTTGTTGATAAAGGTATTTTGACATCGG
TAAGACAAGGGATACAACCCCAATTAGGGCTCCAACAACAAGGGAACCAA
CAAAACCAAAGTTTACCACAACAGCAAGGGGCTCCATTAGCACAAGGGGG
CTACAATAGTAGGAAATACCTCAACAAGGTGATTTTTTCGAACCTATAGC
TTTTCAGCAAAAATTTTTCAATCTCCTTGAAGACAAGTTTGACAGGGCAG
ACGAAAAAAGGGGAAAAGACAATTCTTTTTTAGAAACTCAAATCAATACT
ATGAAAAATAAACAATCTGTATACGACTTTGAAAATATATCAAATAAGCA
CCAATACAAGTTTGTTCAAAATATATACGAACTAAATAACGAGGCAAAAG
TTTTATCTTATGTGCTCGATAAAATTGAGGATCAATTAATTAAACGCAAG
AAAATTATCAAGTACGTAGATAGTTCCATAGAAGGGTGGGACACAACCAA
TGAATATTTGCCCAANCACTTGAAAACAATTTTCGACACCCAGCACGCGT
CACAGCAAGAGAGTTATATCTTGTGTAGCAGGGAAAAATAGTTTCTATAA
AATTCGTTTTAAGAAATGTTATTCGTCAAAAAACTCGTTTGATTTACAAA
ATTAATAGAATCCAGAGTGTCTTGGGATAAGAGAATAAATTTGACATTTT
ATCACGACGTCCTTAGGGAATTGTTATTTTGGAAATTAAACTTGCGTGTT
TTGAATAAAAGATCAATAAGAAAATATGAAGTACCACAGTTAAAAATATT
TTCAGATGCTAGCGCCACGGGAATTGGAGCAATTTTAAATGATTATGTTT
GTTACAAAAATTTTACAACAGATAGGTGAGTGGAAAGTTCTACGTACATG
GAGTTATTGGCTATTAAATATGCCATGGAGTCATTTGACCAGTTTTTAGA
CAATAAACCGATTTTGTGTCATACAAATAACATAAGTACAGCCATAATTG
TCAGGATTTGCAAGAATTAAATTTGTTACAACAGTTGGCAAATGATGTAT
TTATGATTTGTAAGAGGAAAGATGTCAAATTGACAGTGACTTGGATTGCT
CGAAAATACAACGAGAAAGCAGATGAAGTAAAACAGTAGATTATGACGAC
TGGTTTATAAAACAAAATTTTGCGAATGCGATACAGAAAATCGGGGCGAA
GTAACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGATCGGTT
TTGTTCCAAGTATTTTTTCCCCGGAAGTTTTAANGAAAATTGGGGCGAAG
TAACGATAGATTTATTTGCCGACAGTGTCAACATGAAGTGTGATCGGTTT
TGTTCCAAGTATTTTTGCCCCGGAAGTTTCAAGACACAGATGCTTTTTCC
TTTGATTGGACAGGAGAATTTTGTCATATTGTATCACCCATCTATTTAAT
TCCCAAAGCAATTAAGCATTTTCTAGCTTCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAACCTGTTACAAGTCGT
ATTCTCGAAACTTCTCTTCCTTCCTTTTTTGTTTTTGGAGAATTAGAATT
TACGCTAAAGGCAAAATATTTTATGATACGTTATATTGTTTTTAAACGAA
TATGATTTTCAATTTCGNTGAGGAACGTTCTAATTCTAACAATTTTACTT
TTAGAATATTTAACATCTACACAGATTTTAGGAAAAACAAACGCGTCGAT
TACATGCTCAACAATCAGGGATGAGTTGAAACAAATTTTGGAATTCGTGG
TTTATCACAANCCAATTGTAGATTAAAGAATTCGATTATCGATTAATTTC
ATACATTTTCAGGTTGCAAACATTTCAAATTGCATACGTTTTCAAATTGC
TTACGTTTTCAAGTTGTATACGTTTTCAGTTGTATACGTTTTCAAGTTGT
ATACGTTTTCAGTTGTATACGTTTTCAAGTTGTATACGTTTTCAGGTTGT
ATACGTTTCGGGTTACATACGTTTTCGGGTTGCATACGTTTTCATGTTGT
ATACGTTTTCAGGTTGTATACGTTTTCGGGTCACATACGTTTCGGGTCAC
AAACGTTTTCGGGTTACATACGTTTTCAGGTTGTATACGTTTTCGGGTTG
TATAAGTTTCCAGGTTACATACGTTTTCAGGTTGTATACGTTTTCGGGTC
ACATACGTTTTCAGGTTGTGTACGTTTTCGGGTTGTATAAGTTTTCAGGT
TACATACGTTTTCGGGTCACATATGTTTTCAGGTTGTGTACGTTTTCGGG
TTGTATAAGTTTTCAGGTTACATACGTTTTCAGGTTACATGCGTTTTCAG
GTTGTATACGTTTTCGGGTCACATACGTTTTCAGGTTGTATACGTTTTCG
GGTCACATACGTTTTCAAGTTGTATACGTTTTCGGGTCACATACGTTTTC
AAGTTGCATACGTTTTCGGGTTGTATACGTTTTCAAGTTTATATGAATGG
TTTCAAGTTGTTTTATTGAATTTTTAGGGCTCGAACTGCGACCCTCCACG
GTTTTTGTTTCTAGCAGCCTAGTTCTCAGAGACAGTCAGGGCACCCAAAT
TGGCGAACCGGGGCTAGAAAGTGTTTTCATCCGAGGGGGTCAAGGAACGA
GAGTAGCTGTATTATTTTTTAAACGTTTTTTAGAGGATTTTAGACTCCTA
GGGCTACGAATAGGATTAGGACTAGGATTATGATTAGGATTAGGACTAGG
ACTAGGAGTAAAATTATAGTTAGAAATAGAACTAGGGATTAATATATTTT
CCATATTTTATAAGATGTTTTTAGATATGAATACGACACAGGATTTGGTA
CGGCTCCTACTACTACTAGAATACATTAAATCTGTCTCGAAATCGAGATT
TCGGTTGTTGTTTCATCGTGTTTTCAATTTTCATTGGGTCTTTGACAAGA
TTTTAGAAGAATTAGGAAATAAATTAATTTATTTTCGTTTCGTAGATAAG
AAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034856-exon-sc0001227-1575043694:4364..5740 | TCONS_00034856-exon-sc0001227-1575043694:4364..5740 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1575043694:3313..3616 | TCONS_00034856-exon-sc0001227-1575043694:3313..3616 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1575043694:2334..3278 | TCONS_00034856-exon-sc0001227-1575043694:2334..3278 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1510915933:4364..5740 | TCONS_00034856-exon-sc0001227-1510915933:4364..5740 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1510915933:3313..3616 | TCONS_00034856-exon-sc0001227-1510915933:3313..3616 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1510915933:2334..3278 | TCONS_00034856-exon-sc0001227-1510915933:2334..3278 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1491911889:4364..5740 | TCONS_00034856-exon-sc0001227-1491911889:4364..5740 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1491911889:3313..3616 | TCONS_00034856-exon-sc0001227-1491911889:3313..3616 | Clytia hemisphaerica | exon |
| TCONS_00034856-exon-sc0001227-1491911889:2334..3278 | TCONS_00034856-exon-sc0001227-1491911889:2334..3278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001227 | supercontig | sc0001227:2334..5740 - |
Blast
The following BLAST results are available for this feature:
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