|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034688 ID=TCONS_00034688|Name=TCONS_00034688|organism=Clytia hemisphaerica|type=transcript|length=395bp
TTCAACCACAAAATCATGATGTGTCGTGATGCTGTATCATAACATAAACT
GCACGAAACCATTTCTCGTCAAGTAAATCAAGGGTAAGGTTAAATGACTT
CATCAAGCACTGAAACTGTACAACTCTCTGCACCATAAAGAACCTACACT
ACATGATGTGACAGACAAAACAGAAAGGTATTTATCAcagaattcaattc
aattttttcaactaTTCCTAGTCCATTTGCTTTACAAGGGAACACCATGA
ACTGACACGATTTTTGAAGAAAGCTGATTGACATATGATCCTGAAATCGA
GTTATTTGGCAAGTGACGGTTACtgatttctttgatgttttgagTGTTTG
TTTCAAGAGCTAAAAGTTGCTTGAAATAGGATACTGATCTTGGAA Run BLAST on NCBI transcript from alignment at sc0001206:44375..47256+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034688 ID=TCONS_00034688|Name=TCONS_00034688|organism=Clytia hemisphaerica|type=transcript|length=2882bp|location=Sequence derived from alignment at sc0001206:44375..47256+ (Clytia hemisphaerica)
TTCAACCACAAAATCATGATGTGTAAGTATTACTTCACCCATTTATATCA
ACAAATGAGTCTAGTTAGTGCTATTTCTATCTATCCTAAACTAAGGGTCG
GTCAGACAACACtcatttaaggatttttttgtatatttttgtttctttaa
tttgCCTTTGCGATTTGTCATGTCATTCACCCAGATCAGGGGTATAATAt
ctactttttttttacttttttgtaaatgtTGTTTTCCTTTGCTGTTCATT
TGttgtcaaaatgtttgactCTTTTGTCTTTCTACACTACAGGTCGTGAT
GCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Natttcaatattttgaaaatatgaaattttcatgtcgttaaaatctcttg
aaatatgatatttcattaaattttcgctaaatttaaaaattgaaatttcc
atcaaacgggaattcttgaaaatatcatatttcactaaatttacaatttt
tgaaatatgagaGCGCCAATCTAAAATGGCGGCATAGATCTTAAACCGGG
GGTTATTAGAAAACCAATATGTTTCGTATGATATCAATATTTACAATGTA
AATATGTTTTAGAAGATTACTCCAGTTTAGTTTTAAATTCACTCGAATAA
TTTTAATTCAGAGAACACCTAATTGTATGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCTACACTACAGGTCGTGATGCTGTATCATAACATAAAC
TGCACGAAACCATTTCTCGTCAAGTAAATCAAGGGTAAGGTAAGGGAATT
ATCTGCTTATTTGTAGgctactttttttaaaagaactataAGCTGGATAA
TTTGCTATATATgtagatattttttttttagcagtgaaatgtttttggca
aagctttcttctcaattttttaCTATTCTGAGATATGATTAAAATTCATG
ATTATCTTTGTTTGTGAATGAATGATGGAGCAATATACAtcagttttgtt
tatttctataCAGGTTAAATGACTTCATCAAGCACTGAAACTGTACAACT
CTCTGCACCATAAAGAACCTACACTACATGATGTGACAGACAAAACAGAA
AGGTATTTATCAcagaattcaattcaattttttcaactaTTCCTAGTCCA
TTTGCTTTACAAGGTAACCTTTTCTCTCGAAACTAGAGATCAAATGTATA
TAAAGTGATTTTACTAAACTGTTGTTTTACAGCCAATGTTTTGTTAATTT
CCTGGAGGGGGGCATTTAGTCAAAATTGGGCATGGGGACGTTCTGCTGGG
CAGGGTCCCTTTTTTTATACTCTGAAGATATCTAACAGGGTGCAAAACtt
tctaattttcaagatgagtTTCTGATAGGGTcgattattttgattatttt
gggcaattttCACGGTGgaaatgagaaaatttaaaacttcttcggctact
tttattaatttttgccactccagggtgaaaatgggagatcttttaatttt
ttgttctgaCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTGTTCTGACAGGGTTC
CAATTTTGCCAAAAGTTCACATCTGACAGGatcaacttttcaaactccag
tggtacttccccgtcggccgtcatggtcagagcccttggGTTAATTTCGT
GATAAGATTCATATTTACTTTTGATAGTTTGACCAGGTTTGACcatatta
ttatcaattttcaacttttcttcAGGGAACACCATGAACTGACACGATTT
TTGAAGAAAGCTGATTGACATATGATCCTGAAATCGAGTTATTTGGCAAG
TGACGGTTACtgatttctttgatgttttgagTGTTTGTTTCAAGAGCTAA
AAGTTGCTTGAAATAGGATACTGATCTTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034688-exon-sc0001206-1491911889:44375..44396 | TCONS_00034688-exon-sc0001206-1491911889:44375..44396 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1510915933:44375..44396 | TCONS_00034688-exon-sc0001206-1510915933:44375..44396 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1575043694:44375..44396 | TCONS_00034688-exon-sc0001206-1575043694:44375..44396 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1491911889:45998..46063 | TCONS_00034688-exon-sc0001206-1491911889:45998..46063 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1510915933:45998..46063 | TCONS_00034688-exon-sc0001206-1510915933:45998..46063 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1575043694:45998..46063 | TCONS_00034688-exon-sc0001206-1575043694:45998..46063 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1491911889:46288..46437 | TCONS_00034688-exon-sc0001206-1491911889:46288..46437 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1510915933:46288..46437 | TCONS_00034688-exon-sc0001206-1510915933:46288..46437 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1575043694:46288..46437 | TCONS_00034688-exon-sc0001206-1575043694:46288..46437 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1491911889:47100..47256 | TCONS_00034688-exon-sc0001206-1491911889:47100..47256 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1510915933:47100..47256 | TCONS_00034688-exon-sc0001206-1510915933:47100..47256 | Clytia hemisphaerica | exon |
| TCONS_00034688-exon-sc0001206-1575043694:47100..47256 | TCONS_00034688-exon-sc0001206-1575043694:47100..47256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001206 | supercontig | sc0001206:44375..47256 + |
Blast
The following BLAST results are available for this feature:
|
