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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034682 ID=TCONS_00034682|Name=TCONS_00034682|organism=Clytia hemisphaerica|type=transcript|length=1188bp
gacagaaaaaaaagaaatgatgACAATTAAATaatacaacaacaaaatac
tGAGAAAAAGGATTCACAAAAAAAACCCGGCGAATAAAACCAATTTACCA
AAACCACCAAACACACCAGAGAGCACCAACACACTCTCCCCCACAATGTC
AAATTTCGaagaagaacaagaagaagagCTGGAAGTTTTGAGAAGCATCT
ACGAAGGAGATgagaaattcaatgaaatcaacACCAAATGTTTTCAATAC
AAATATGGCACTGAAGACAATAAGTCCATCCTCGTTGAAATCTCGTGGCC
GGAAACATACCCCTCTGTTCTTCCAAATGTCAGCTTAGATTTGTTCCATA
ACAAGTACTTGCCGCCAGATTTCAAGAATGAAGTACGTGAGAAAATCCTG
GAGCAAGGGCAAGATTTTCTTGATTGTGCGATGACGTACTCTTTGTTNTT
CAAGAATGAAGTACGTGAGAAAATCCTGGAGCAAGGGCAAGATTTTCTTG
ATTGTGCGATGACGTACTCTTTGTTTGATTGGATGAACGAAAATGCTGAC
GACTTCATTAATCGAATCCCAGAGATGGAGAAGCGCCAACAAGTAGAGAA
ACCAGAACGCGATGAAAGTGACCAACCGGTCAAAGTTGAGAAACAGAAGA
AAGAGCAATTAACGAAAGCACAGAAGAGGAGGATCACCGAACGAACCAAT
CACAAAGGAGAACGAGAACGAGGCTGGAATTGGGTTGACGTCATTAGACA
TCTATCGCAAACTGGAGGAGGTGCTTGAGTATCTGTTTGTGTGAATCCAT
CCTCTCTTGTTTAAAACGTCCTTTCTAAAAGTCGTTCTTGGAATGGAGAA
GATAATCTCGAGATTCTTTTGCGAGAAATCCGACcatcaaaatagaaaat
gatTTAGAGTTCTGACGTTTATGCTGGCGTAAACAATTTGTATGCTCATT
TGTGACATTGTGATGATTTCCATGCAAACAGCCCATATATTAAATTCGGC
GACTTATGCCTTGTACTATGGAGTATTTCTTACTTTTAATATACCTCGac
ttttttatacttttcaaagtattttcaaagtttggaTTAACGGCTAAACG
CTTTGTTTACTTTTCTGATATTATGAACTTTTGACAtcaaattgataaaa
aagtgcAGTAAACTATATgcttcaaaactttgttttcg Run BLAST on NCBI protein sequence of TCONS_00034682-protein >TCONS_00034682-protein ID=TCONS_00034682-protein|Name=TCONS_00034682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MSNFEEEQEEELEVLRSIYEGDEKFNEINTKCFQYKYGTEDNKSILVEIS
WPETYPSVLPNVSLDLFHNKYLPPDFKNEVREKILEQGQDFLDCAMTYSL
XFKNEVREKILEQGQDFLDCAMTYSLFDWMNENADDFINRIPEMEKRQQV
EKPERDESDQPVKVEKQKKEQLTKAQKRRITERTNHKGERERGWNWVDVI
RHLSQTGGGA Run BLAST on NCBI transcript from alignment at sc0001204:34794..38140- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034682 ID=TCONS_00034682|Name=TCONS_00034682|organism=Clytia hemisphaerica|type=transcript|length=3347bp|location=Sequence derived from alignment at sc0001204:34794..38140- (Clytia hemisphaerica)
GACAGAAAAAAAAGAAATGATGACAATTAAATAATACAACAACAAAATAC
TGAGAAAAAGGATTCACAAAAAAAACCCGGCGAATAAAACCAATTTACCA
AAACCACCAAACACACCAGAGAGCACCAACACACTCTCCCCCACAATGTC
AAATTTCGAAGAAGAACAAGAAGAAGAGCTGGAAGTTTTGAGAAGCATCT
ACGAAGGAGATGAGAAATTCAATGAAATCAACACCAAATGTTTTCAATAC
AAATATGGCACTGAAGACAATAAGTCCATCCTCGTTGAAATCTCGTGGCC
GGAAACATACCCCTCTGTTCTTCCAAATGTCAGCTTAGGTAATTTCCAAA
TCATTTTCATAGTTTCTAGAGGGGTCAAGGATGCTAATCAAAAATTAACC
CCCGTTTTGTGACATTTTTTATGTCATCCACTATTTTGCTCATAGAATGA
GGCCATCATGTGGCTTACATGTCAAAATACATCCATGGTTAAGCTGAATA
ATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGGGGGGGGTAGAAACTATGATTTTTATCATTTTGTGAACCACTCTCT
AAAAACCGGCTGATGCAGGCTGATGATCTAAAGTATCAATTGACGTAAAA
TGAGCTTAGTAATAATAATAAAGTAAAGCTCAGATTGCAGATATGCTTTT
AATTCGTCATCTATAATCGATGAGTCATCAGAAATTGCATCTTTCATTGT
CCGCAAGCTAGGATATTTCTTATCATTCCTTTTCACTGGGAGTTCATTGG
CCTTGGCCTCATTCGGATAAGACCGATATTCCTCTAAATCTTCAAGTTTT
ATCAAATCTTTGGTTTTCGTGATTTTTATTTTGTTATTTTTATCATGACA
GATTTGTTCCATAACAAGTACTTGCCGCCAGATTTCAAGAATGAAGTACG
TGAGAAAATCCTGGAGCAAGGGCAAGATTTTCTTGATTGTGCGATGACGT
ACTCTTTGTTNTTCAAGAATGAAGTACGTGAGAAAATCCTGGAGCAAGGG
CAAGATTTTCTTGATTGTGCGATGACGTACTCTTTGTTTGATTGGATGAA
CGAAAATGCTGACGACTTCATTAATCGAATCCCAGAGATGGAGAAGGTAA
TTGTTTGTTTTAGACCACAGCATGATGTGATTCTCGTTTTGCCGCTCCTT
CTTTATAATTCTTCAAGTCCGTATTCAAGATCTACATAAGCAGGGCTATT
ATTGTGCATAGTTTACCGAACCAGTTGAGTCTCATTGCATTGTGTAATAA
TACATTGGGCTGCGCAATAACTGATGTGATATTACCTGTCAACCTTTTTC
ACCTGCAATTATTCTCAATGCTACTCACGATCGTGTAATATCACATCAGT
CAGATGTTAAAATCTGAATTTAAGTGTAAAGAATTTAAGTCCAATGCATT
AATACATGTTTTGCGGCTTTGAATATTGCTTACCTTGAGTTAATAAATCG
GAATATCTAATGTTAAAAGACCATGCAATATCTGCTGAATATTGTACCAT
TGCAACGGATGGTATTAGTTACTCTTTACCAGAGTGTATCTCGTGTTTAT
CGCTCCGTAGTACACTCTGTGCGAATTGTCTTTTTAATAAAAAACTTCCC
GTACAGAGATCTCTGCGATGAAGTATGATTTATTAAAAGACAACACTTAT
CTCATCGTCTCCCCTCTCTCACCAACACTCCATCGCAGCGGTCGGTTTGA
AAAAATCTCAAATGAGAAAAGACAATGACAACAGACCCTCTACGGCAACG
AATTTTGAAATCAACCGTAGATATCGGTTTGAGTACAGAGAAGATATTAA
TTGGCGTGTAATTTTCTAATTCTGCTTGTAATTTTTCTTCAGCGCCAACA
AGTAGAGAAACCAGAACGCGATGAAAGTGACCAACCGGTCAAAGTTGAGA
AACAGAAGAAAGAGCAATTAACGAAAGCACAGAAGAGGAGGATCACCGAA
CGAACCAATCACAAAGGAGAACGAGAACGAGGCTGGAATTGGGTTGACGT
CATTAGACATCTATCGCAAACTGGAGGAGGTGCTTGAGTATCTGTTTGTG
TGAATCCATCCTCTCTTGTTTAAAACGTCCTTTCTAAAAGTCGTTCTTGG
AATGGAGAAGATAATCTCGAGATTCTTTTGCGAGAAATCCGACCATCAAA
ATAGAAAATGATTTAGAGTTCTGACGTTTATGCTGGCGTAAACAATTTGT
ATGCTCATTTGTGACATTGTGATGATTTCCATGCAAACAGCCCATATATT
AAATTCGGCGACTTATGCCTTGTACTATGGAGTATTTCTTACTTTTAATA
TACCTCGACTTTTTTATACTTTTCAAAGTATTTTCAAAGTTTGGATTAAC
GGCTAAACGCTTTGTTTACTTTTCTGATATTATGAACTTTTGACATCAAA
TTGATAAAAAAGTGCAGTAAACTATATGCTTCAAAACTTTGTTTTCG Coding sequence (CDS) from alignment at sc0001204:34794..38140- >TCONS_00034682 ID=TCONS_00034682|Name=TCONS_00034682|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at sc0001204:34794..38140- (Clytia hemisphaerica)
CGCCAACAAGTAGAGAAACCAGAACGCGATGAAAGTGACCAACCGGTCAA
AGTTGAGAAACAGAAGAAAGAGCAATTAACGAAAGCACAGAAGAGGAGGA
TCACCGAACGAACCAATCACAAAGGAGAACGAGAACGAGGCTGGAATTGG
GTTGACGTCATTAGACATCTATCGCAAACTGGAGGAGGTGCTTGAATTTG
TTCCATAACAAGTACTTGCCGCCAGATTTCAAGAATGAAGTACGTGAGAA
AATCCTGGAGCAAGGGCAAGATTTTCTTGATTGTGCGATGACGTACTCTT
TGTTNTTCAAGAATGAAGTACGTGAGAAAATCCTGGAGCAAGGGCAAGAT
TTTCTTGATTGTGCGATGACGTACTCTTTGTTTGATTGGATGAACGAAAA
TGCTGACGACTTCATTAATCGAATCCCAGAGATGGAGAAGATGTCAAATT
TCGAAGAAGAACAAGAAGAAGAGCTGGAAGTTTTGAGAAGCATCTACGAA
GGAGATGAGAAATTCAATGAAATCAACACCAAATGTTTTCAATACAAATA
TGGCACTGAAGACAATAAGTCCATCCTCGTTGAAATCTCGTGGCCGGAAA
CATACCCCTCTGTTCTTCCAAATGTCAGCTTAGCGCCAACAAGTAGAGAA
ACCAGAACGCGATGAAAGTGACCAACCGGTCAAAGTTGAGAAACAGAAGA
AAGAGCAATTAACGAAAGCACAGAAGAGGAGGATCACCGAACGAACCAAT
CACAAAGGAGAACGAGAACGAGGCTGGAATTGGGTTGACGTCATTAGACA
TCTATCGCAAACTGGAGGAGGTGCTTGAATTTGTTCCATAACAAGTACTT
GCCGCCAGATTTCAAGAATGAAGTACGTGAGAAAATCCTGGAGCAAGGGC
AAGATTTTCTTGATTGTGCGATGACGTACTCTTTGTTNTTCAAGAATGAA
GTACGTGAGAAAATCCTGGAGCAAGGGCAAGATTTTCTTGATTGTGCGAT
GACGTACTCTTTGTTTGATTGGATGAACGAAAATGCTGACGACTTCATTA
ATCGAATCCCAGAGATGGAGAAGATGTCAAATTTCGAAGAAGAACAAGAA
GAAGAGCTGGAAGTTTTGAGAAGCATCTACGAAGGAGATGAGAAATTCAA
TGAAATCAACACCAAATGTTTTCAATACAAATATGGCACTGAAGACAATA
AGTCCATCCTCGTTGAAATCTCGTGGCCGGAAACATACCCCTCTGTTCTT
CCAAATGTCAGCTTAGCGCCAACAAGTAGAGAAACCAGAACGCGATGAAA
GTGACCAACCGGTCAAAGTTGAGAAACAGAAGAAAGAGCAATTAACGAAA
GCACAGAAGAGGAGGATCACCGAACGAACCAATCACAAAGGAGAACGAGA
ACGAGGCTGGAATTGGGTTGACGTCATTAGACATCTATCGCAAACTGGAG
GAGGTGCTTGAATTTGTTCCATAACAAGTACTTGCCGCCAGATTTCAAGA
ATGAAGTACGTGAGAAAATCCTGGAGCAAGGGCAAGATTTTCTTGATTGT
GCGATGACGTACTCTTTGTTNTTCAAGAATGAAGTACGTGAGAAAATCCT
GGAGCAAGGGCAAGATTTTCTTGATTGTGCGATGACGTACTCTTTGTTTG
ATTGGATGAACGAAAATGCTGACGACTTCATTAATCGAATCCCAGAGATG
GAGAAGATGTCAAATTTCGAAGAAGAACAAGAAGAAGAGCTGGAAGTTTT
GAGAAGCATCTACGAAGGAGATGAGAAATTCAATGAAATCAACACCAAAT
GTTTTCAATACAAATATGGCACTGAAGACAATAAGTCCATCCTCGTTGAA
ATCTCGTGGCCGGAAACATACCCCTCTGTTCTTCCAAATGTCAGCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034682-exon-sc0001204-1575043694:37803..38140 | TCONS_00034682-exon-sc0001204-1575043694:37803..38140 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1575043694:36145..36389 | TCONS_00034682-exon-sc0001204-1575043694:36145..36389 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1575043694:34794..35398 | TCONS_00034682-exon-sc0001204-1575043694:34794..35398 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1510915933:37803..38140 | TCONS_00034682-exon-sc0001204-1510915933:37803..38140 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1510915933:36145..36389 | TCONS_00034682-exon-sc0001204-1510915933:36145..36389 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1510915933:34794..35398 | TCONS_00034682-exon-sc0001204-1510915933:34794..35398 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1491911889:37803..38140 | TCONS_00034682-exon-sc0001204-1491911889:37803..38140 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1491911889:36145..36389 | TCONS_00034682-exon-sc0001204-1491911889:36145..36389 | Clytia hemisphaerica | exon |
| TCONS_00034682-exon-sc0001204-1491911889:34794..35398 | TCONS_00034682-exon-sc0001204-1491911889:34794..35398 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001204 | supercontig | sc0001204:34794..38140 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006575 | RWD-domain |
| IPR016135 | UBQ-conjugating_enzyme/RWD |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00034682 vs. Swiss-Prot (Human)
Match: RWDD4 (RWD domain-containing protein 4 OS=Homo sapiens GN=RWDD4 PE=1 SV=3) HSP 1 Score: 126.331 bits (316), Expect = 7.893e-34 Identity = 78/202 (38.61%), Postives = 107/202 (52.97%), Query Frame = 2
Query: 185 VLRSIYEGDEKFNEINTKCFQYKYG-TEDNKSILVEISWPETYPSVLPNVSLDLFHNKYLPPDFKNEVREKILEQGQDFLDCAMTYSLXFKNEVREKILEQGQDFLDCAMTYSLFDWMNENADDF------INRIPEMEKRQQVEKPERDESDQPXXXXXXXXXXLTKAQKRRITERTNHKGERERGWNWVDVIRHLSQTGG 769
LRSIYEGDE F E++ FQY+ G D K+ L+EISW ETYP P +S++ F N T S K + K+ E + L AMTY+LF++ +N + F IN + +E P + P +K KKEQL+KAQKR++ ++T+HKGE RGWNWVDV++HLS+TG
Sbjct: 13 ALRSIYEGDESFRELSPVSFQYRIGENGDPKAFLIEISWTETYPQTPPILSMNAFFNN--------------------------TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNIISIETP----NTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLSKTGS 184
The following BLAST results are available for this feature:
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