TCONS_00034682-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034682-protein
Unique NameTCONS_00034682-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length210

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034682-protein ID=TCONS_00034682-protein|Name=TCONS_00034682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MSNFEEEQEEELEVLRSIYEGDEKFNEINTKCFQYKYGTEDNKSILVEIS
WPETYPSVLPNVSLDLFHNKYLPPDFKNEVREKILEQGQDFLDCAMTYSL
XFKNEVREKILEQGQDFLDCAMTYSLFDWMNENADDFINRIPEMEKRQQV
EKPERDESDQPVKVEKQKKEQLTKAQKRRITERTNHKGERERGWNWVDVI
RHLSQTGGGA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020146XLOC_020146Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034682TCONS_00034682Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006575RWD-domain
IPR016135UBQ-conjugating_enzyme/RWD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006575RWD domainSMARTSM00591RWD2001bcoord: 10..137
e-value: 8.4E-11
score: 51.9
IPR006575RWD domainPFAMPF05773RWDcoord: 6..134
e-value: 1.2E-11
score: 44.8
IPR006575RWD domainPROSITEPS50908RWDcoord: 10..137
score: 14.723
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 1..143
e-value: 5.8E-16
score: 58.1
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 1..100

Blast
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BLAST of TCONS_00034682-protein vs. Swiss-Prot (Human)
Match: RWDD4 (RWD domain-containing protein 4 OS=Homo sapiens GN=RWDD4 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.666e-44
Identity = 84/210 (40.00%), Postives = 114/210 (54.29%), Query Frame = 0 
Query:    6 EEQEEELEVLRSIYEGDEKFNEINTKCFQYKYG-TEDNKSILVEISWPETYPSVLPNVSLDLFHNKYLPPDFKNEVREKILEQGQDFLDCAMTYSLXFKNEVREKILEQGQDFLDCAMTYSLFDWMNENADDF------INRIPEMEKRQQVEKPERDESDQPVKVEKQKKEQLTKAQKRRITERTNHKGERERGWNWVDVIRHLSQTGG 208
            E+QE ELE LRSIYEGDE F E++   FQY+ G   D K+ L+EISW ETYP   P +S++ F N                           T S   K  +  K+ E  +  L  AMTY+LF++  +N + F      IN    +     +E P    +  P   +K KKEQL+KAQKR++ ++T+HKGE  RGWNWVDV++HLS+TG 
Sbjct:    5 EDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKAFLIEISWTETYPQTPPILSMNAFFNN--------------------------TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNIISIETP----NTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLSKTGS 184
The following BLAST results are available for this feature:
BLAST of TCONS_00034682-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RWDD41.666e-4440.00RWD domain-containing protein 4 OS=Homo sapiens GN... [more]
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