TCONS_00034681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034681
Unique NameTCONS_00034681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length964

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034681 ID=TCONS_00034681|Name=TCONS_00034681|organism=Clytia hemisphaerica|type=transcript|length=964bp
caaaaaagaaagatagAATATTgtgaaagaaagattttgaacCATGGaag
atttatttcaaaaatatcaaatgacaGAAGCACAAAAGGGCTTAGTAAAT
GGCATTaagaatattaaaaatttaccgACCTTCATTGAAGAGATGGATGA
TGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGACATGCCCA
AAGAACCTACAGACaatgatttgaagttttataaGAATGCTGTTGATGAA
AGAGTTAGAAGGCTTGAAGAAGCAGAAAGGCGTTACAAATGGTTTTCATT
GAAGTGGAACAAAACATCAATGCGTCGTTTGATAACGAATTGGTTTTGTG
GTATAATGGTCATCGACCCAAACCTCAAGACCAAAGATGGCTCACCAATG
CAATTCGTTTATGAATATTACGGACCAGAATCAAAATATCCTGACAAGGA
GCATCAAACAGATGATTGGAAAAAAGAAGGGATTGACTTTTATGTGTTGA
TGGCTCGAAGCATTTGTAGAACATACCCTGAAGCTACTTCGAAAGGTATT
GTATCATTTTCCGACATGTCGGCTTTTGATTGGGAAAAATACGACATGGA
AACGAAAACACGTCATTCAGAAATCGGTTCGTTGATTCCCAAcaagttaa
gggctctgaccatagtgaatttttcataattgccgtgtttaaaatatgtt
ttctgactgatgtaaccaacaaaactatggcatgttatacattttctgtt
agagaaactattcctgaatctgaaaattcaaaaattgcattgaaaaattt
tgatgaagaagaaaatgaagacttttgcgaggaagagtatttcaactttg
aagagcttagtttcggcgaagaaaaaacattttgaaaatttttttgcagt
agatggtgtatcttttaccgaacaataaaaatttttgcggaaaatttttg
taaatgcttctatg
Run BLAST on NCBI

transcript from alignment at sc0001204:30321..33239-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034681 ID=TCONS_00034681|Name=TCONS_00034681|organism=Clytia hemisphaerica|type=transcript|length=2919bp|location=Sequence derived from alignment at sc0001204:30321..33239- (Clytia hemisphaerica)
CAAAAAAGAAAGATAGAATATTGTGAAAGAAAGATTTTGAACCATGGAAG
ATTTATTTCAAAAATATCAAATGACAGAAGCACAAAAGGGCTTAGTAAAT
GGCATTAAGAATATTAAAAATTTACCGACCTTCATTGAAGAGATGGATGA
TGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGACATGCCCA
AAGAACCTACAGACAATGATTTGAAGTTTTATAAGAATGCTGTTGATGAA
AGAGTTAGAAGGTATGCGATGTTACTGTACCTCGGAAACAAACTTTATTT
TTATTCAGCCTCTCCATAAATCTTTTCGATATCTAATGCTTATCAAATCT
TCATTTTCAGCCTCAAATAATGCTTGTTCATATACGTGCGAAGGATTTGT
CGATTTTGGCCGATTTTCATTTTCACTTTCTAAGACAATTGTTCAAATTC
TTTTGTTTCATTTTAAATATCATTGTTTCAACGTGGCTAAGTCGAATTAT
GGTGCAGTGGCAACCTCCCTGTCTCAATGATAACATTTAAAAAAAAAAAT
TTGAATGGTGAATTTTCCAAGTTTTGAGCTACGCTAAGCATTTTTTCTGC
AAATTTAAGCCACAGTATACCTTTAAACAATATGCTTATATAAAAAATAA
TTAGAACCAGAAAAAGGAGACAGAAATTCACAAAGCTAATGTCCATTTAA
AACATTGCAAACATCGTTGCATTGCATGGACGTTGAAACAACAATTGGTT
TAATCTTTCATTATTAGGCTTGAAGAAGCAGAAAGGCGTTACAAATGGTT
TTCATTGAAGTGGAACAAAACATCAATGCGTCGTTTGATAACGAATTGGT
TTTGTGGTATAATGGTCATCGACCCAAACCTCAAGACCAAAGATGGCTCA
CCAATGCAATTCGTTTATGAATATTACGGACCAGAATCAAAATATCCTGA
CAAGGTTTGATCCATTTTGACCCTTGGTAAACTTGACCTTAAAATTACAT
TCCTCTTGTTTTTCTGGCTTTCTTTTGTCATTCGACTTATACGTAAATAG
AGGTATTTTACTATTCCTATTTCTCGGTTGAAAAGGACACAGATCTTTCT
TGACTGAGAGATCAGAGATAGACTTGCGTCAAATTCTCTGAATAACCCTG
TCTCGCCAAAAAATATAAGATATGAATACATTTGACGTTTCTTTTTCATT
GCCAAGTTGCAAAAACCTTCAATATTCAGATTCTCATCAACCATTGTATT
CATCAAGAGAAACCCAACGGGTCGTCGGGTCGAGCTTCCTCCCTTCTTTT
TCTTTTTGGGAGGTAGTCATGGCGTTCTAAATCAAATTTGACACAGCACA
AGAAGTGAAGAAGAGAAAAAATTGTGGAACTGGGTTAGCAATAGTTTTGG
CAAATCTCATCACGTTAAAAAGATTGATTTGCAATTAATTGAATATTTAG
CTTAATCACCTTTCGTGGTTTATTGGTAATGCTAGACAGACCTACATAAC
TCTTAAAAGAAATGACACATAGGCTAGAAATTTGAAAAAAGGGACTAAAG
GGACTAAAGGGACGAGTGTTTTGGGCGAGACGTCGGTAGCAGTTAAATTT
ATGCATTTAAAGGCCGGTCTCCACTTTCGAGCAAAATGAGCGAAAATTTT
TTAACGCTTTTGTAAGGTCATTGATCGGTTGAAAAATGAAGCAATTCCAT
TGGTCAAAATTGTTCGCGCGAAACTCTTTTATGACGTAATCTTTTATGAC
GTAATCTTTTATGACGTAATCTTTTCTTGAGGCAAAAAAGTTTGATAAAA
AAATTGTCACCCATTTCGCGTGAAATTGGAGACCAGCCTTAACTGATGTA
TGCTCCTCTTTAATGAATGAATTTCATTTTCTGTATTGTCTAGGAGCATC
AAACAGATGATTGGAAAAAAGAAGGGATTGACTTTTATGTGTTGATGGCT
CGAAGCATTTGTAGAACATACCCTGAAGCTACTTCGAAAGGTCAGTATTG
CAAAAGTCATGGGAATTAGCTTTTATCACGGAATTCCGTACTTTTATTCA
TTATATTCACAACGTAATGTTTTCTAAGGAAACGTGTGTGAACCATCCGG
TGTCCCTAATAAAAATTCATTATATTAATCATAATGACATAATATTTTCT
ACGGACCCCGGCTTTTGCCAGTTGTGGCAAATTTGAGCTAGAGAGAATTG
CCACTACTGACCAAATCCAGTGTCCTTAGAAAACATTACATAATGACTAT
CATGAATCTTTAGGAACACCGGATGGTGCACACGTTCAACAACAGGCTAC
CAGTCAAGGTTATGTTCAAATTAGCCGATCGTCGGTTGTTTAGCCGCAAA
ATACAATACAAATTTTTACCAATTATCATTGCTTTTCACGAAATAAATAT
GATGGACAGAATTCGTTTTAGTTCACTAAAAAAGTGGTCAAATTGCCCAG
TTTTCTTTAAATACAGACTTTTTTATTTCATAATACTCATTTATTTCCAG
GTATTGTATCATTTTCCGACATGTCGGCTTTTGATTGGGAAAAATACGAC
ATGGAAACGAAAACACGTCATTCAGAAATCGGTTCGTTGATTCCCAACAA
GTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTGTTTAAAAT
ATGTTTTCTGACTGATGTAACCAACAAAACTATGGCATGTTATACATTTT
CTGTTAGAGAAACTATTCCTGAATCTGAAAATTCAAAAATTGCATTGAAA
AATTTTGATGAAGAAGAAAATGAAGACTTTTGCGAGGAAGAGTATTTCAA
CTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAATTTTTTT
GCAGTAGATGGTGTATCTTTTACCGAACAATAAAAATTTTTGCGGAAAAT
TTTTGTAAATGCTTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020145XLOC_020145Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034681-exon-sc0001204-1575043694:32979..33239TCONS_00034681-exon-sc0001204-1575043694:32979..33239Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1575043694:32286..32472TCONS_00034681-exon-sc0001204-1575043694:32286..32472Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1575043694:31250..31346TCONS_00034681-exon-sc0001204-1575043694:31250..31346Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1575043694:30321..30739TCONS_00034681-exon-sc0001204-1575043694:30321..30739Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1510915933:32979..33239TCONS_00034681-exon-sc0001204-1510915933:32979..33239Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1510915933:32286..32472TCONS_00034681-exon-sc0001204-1510915933:32286..32472Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1510915933:31250..31346TCONS_00034681-exon-sc0001204-1510915933:31250..31346Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1510915933:30321..30739TCONS_00034681-exon-sc0001204-1510915933:30321..30739Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1491911889:32979..33239TCONS_00034681-exon-sc0001204-1491911889:32979..33239Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1491911889:32286..32472TCONS_00034681-exon-sc0001204-1491911889:32286..32472Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1491911889:31250..31346TCONS_00034681-exon-sc0001204-1491911889:31250..31346Clytia hemisphaericaexon
TCONS_00034681-exon-sc0001204-1491911889:30321..30739TCONS_00034681-exon-sc0001204-1491911889:30321..30739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001204supercontigsc0001204:30321..33239 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9035	12.849	10.7196	14.3041	7.55757	5.06865	7.29995	8.22819	7.79266	7.38725	8.40932	8.1684	8.42373	6.48601	5.44116	4.90726	6.33971	6.80757	8.46693	8.22116	6.19973	6.29088	7.84464	7.37801	11.4448	12.5343	4.35772	3.69199	4.08884	5.28751
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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