TCONS_00034680 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00034680
Unique Name	TCONS_00034680
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1273

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001204:28962..33247-
coding sequence from alignment at sc0001204:28962..33247-

transcript sequence

>TCONS_00034680 ID=TCONS_00034680|Name=TCONS_00034680|organism=Clytia hemisphaerica|type=transcript|length=1273bp
ttcagcaacaaaaaagaaagatagAATATTgtgaaagaaagattttgaac
CATGGaagatttatttcaaaaatatcaaatgacaGAAGCACAAAAGGGCT
TAGTAAATGGCATTaagaatattaaaaatttaccgACCTTCATTGAAGAG
ATGGATGATGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGA
CATGCCCAAAGAACCTACAGACaatgatttgaagttttataaGAATGCTG
TTGATGAAAGAGTTAGAAGGCTTGAAGAAGCAGAAAGGCGTTACAAATGG
TTTTCATTGAAGTGGAACAAAACATCAATGCGTCGTTTGATAACGAATTG
GTTTTGTGGTATAATGGTCATCGACCCAAACCTCAAGACCAAAGATGGCT
CACCAATGCAATTCGTTTATGAATATTACGGACCAGAATCAAAATATCCT
GACAAGGAGCATCAAACAGATGATTGGAAAAAAGAAGGGATTGACTTTTA
TGTGTTGATGGCTCGAAGCATTTGTAGAACATACCCTGAAGCTACTTCGA
AAGGTATTGTATCATTTTCCGACATGTCGGCTTTTGATTGGGAAAAATAC
GACATGGAAACGAAAACACGTCATTCAGAAATCGGAACCAGACGCTTTGA
AATTGTTGTTGGAAACTTTTGACGAGATGGAAAAAGCTGGTGAAATACCA
CACCCCAAACACATGGAGTGATTTTTTTAGCTAGCTACGTGATCATTCGG
GGTTTAGACATCAAAGTTTCGATAACTCAGGGAAAATGGAGgagttaaat
ttttcagatcACTCGTATATAACAGAATTGTTTGTAATTTAGTGTCTTGT
TAAACTgatttcatagcccttttttgcttgtttttgtcgACTGTTACGCT
TCTTATGCGcatcaaagaaaaagtttcttgataaacattgaatttcatgt
atgaaataaaggtccgaaccaaacgatttgaattcgaaatcttcttcaac
cgaggggggggcaatgaatgaaaaagtacctacgtacttaccagggggta
tagctatttgcgtacgcttgcgtacagggtcttttgtttcttttgctaaa
aatattagaaaaaagaattcaaatccaGTGCCTTTATAACTGTCGATTGT
TCTCTGTGTGGGTTCAATTTTGAGACCCTATTTTTTCGTCTTAATTCTAT
TGCCCCTCCCTGGGGAACTATTCTATCCTAGTGGAGTattttttgcttca
ttttttttaaatcatccTAATAA

Run BLAST on NCBI

protein sequence of TCONS_00034680-protein

>TCONS_00034680-protein ID=TCONS_00034680-protein|Name=TCONS_00034680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MEDLFQKYQMTEAQKGLVNGIKNIKNLPTFIEEMDDVEQLIWVVAVATID
MPKEPTDNDLKFYKNAVDERVRRLEEAERRYKWFSLKWNKTSMRRLITNW
FCGIMVIDPNLKTKDGSPMQFVYEYYGPESKYPDKEHQTDDWKKEGIDFY
VLMARSICRTYPEATSKGIVSFSDMSAFDWEKYDMETKTRHSEIGTRRFE
IVVGNF

Run BLAST on NCBI

transcript from alignment at sc0001204:28962..33247-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00034680 ID=TCONS_00034680|Name=TCONS_00034680|organism=Clytia hemisphaerica|type=transcript|length=4286bp|location=Sequence derived from alignment at sc0001204:28962..33247- (Clytia hemisphaerica)
TTCAGCAACAAAAAAGAAAGATAGAATATTGTGAAAGAAAGATTTTGAAC
CATGGAAGATTTATTTCAAAAATATCAAATGACAGAAGCACAAAAGGGCT
TAGTAAATGGCATTAAGAATATTAAAAATTTACCGACCTTCATTGAAGAG
ATGGATGATGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGA
CATGCCCAAAGAACCTACAGACAATGATTTGAAGTTTTATAAGAATGCTG
TTGATGAAAGAGTTAGAAGGTATGCGATGTTACTGTACCTCGGAAACAAA
CTTTATTTTTATTCAGCCTCTCCATAAATCTTTTCGATATCTAATGCTTA
TCAAATCTTCATTTTCAGCCTCAAATAATGCTTGTTCATATACGTGCGAA
GGATTTGTCGATTTTGGCCGATTTTCATTTTCACTTTCTAAGACAATTGT
TCAAATTCTTTTGTTTCATTTTAAATATCATTGTTTCAACGTGGCTAAGT
CGAATTATGGTGCAGTGGCAACCTCCCTGTCTCAATGATAACATTTAAAA
AAAAAAATTTGAATGGTGAATTTTCCAAGTTTTGAGCTACGCTAAGCATT
TTTTCTGCAAATTTAAGCCACAGTATACCTTTAAACAATATGCTTATATA
AAAAATAATTAGAACCAGAAAAAGGAGACAGAAATTCACAAAGCTAATGT
CCATTTAAAACATTGCAAACATCGTTGCATTGCATGGACGTTGAAACAAC
AATTGGTTTAATCTTTCATTATTAGGCTTGAAGAAGCAGAAAGGCGTTAC
AAATGGTTTTCATTGAAGTGGAACAAAACATCAATGCGTCGTTTGATAAC
GAATTGGTTTTGTGGTATAATGGTCATCGACCCAAACCTCAAGACCAAAG
ATGGCTCACCAATGCAATTCGTTTATGAATATTACGGACCAGAATCAAAA
TATCCTGACAAGGTTTGATCCATTTTGACCCTTGGTAAACTTGACCTTAA
AATTACATTCCTCTTGTTTTTCTGGCTTTCTTTTGTCATTCGACTTATAC
GTAAATAGAGGTATTTTACTATTCCTATTTCTCGGTTGAAAAGGACACAG
ATCTTTCTTGACTGAGAGATCAGAGATAGACTTGCGTCAAATTCTCTGAA
TAACCCTGTCTCGCCAAAAAATATAAGATATGAATACATTTGACGTTTCT
TTTTCATTGCCAAGTTGCAAAAACCTTCAATATTCAGATTCTCATCAACC
ATTGTATTCATCAAGAGAAACCCAACGGGTCGTCGGGTCGAGCTTCCTCC
CTTCTTTTTCTTTTTGGGAGGTAGTCATGGCGTTCTAAATCAAATTTGAC
ACAGCACAAGAAGTGAAGAAGAGAAAAAATTGTGGAACTGGGTTAGCAAT
AGTTTTGGCAAATCTCATCACGTTAAAAAGATTGATTTGCAATTAATTGA
ATATTTAGCTTAATCACCTTTCGTGGTTTATTGGTAATGCTAGACAGACC
TACATAACTCTTAAAAGAAATGACACATAGGCTAGAAATTTGAAAAAAGG
GACTAAAGGGACTAAAGGGACGAGTGTTTTGGGCGAGACGTCGGTAGCAG
TTAAATTTATGCATTTAAAGGCCGGTCTCCACTTTCGAGCAAAATGAGCG
AAAATTTTTTAACGCTTTTGTAAGGTCATTGATCGGTTGAAAAATGAAGC
AATTCCATTGGTCAAAATTGTTCGCGCGAAACTCTTTTATGACGTAATCT
TTTATGACGTAATCTTTTATGACGTAATCTTTTCTTGAGGCAAAAAAGTT
TGATAAAAAAATTGTCACCCATTTCGCGTGAAATTGGAGACCAGCCTTAA
CTGATGTATGCTCCTCTTTAATGAATGAATTTCATTTTCTGTATTGTCTA
GGAGCATCAAACAGATGATTGGAAAAAAGAAGGGATTGACTTTTATGTGT
TGATGGCTCGAAGCATTTGTAGAACATACCCTGAAGCTACTTCGAAAGGT
CAGTATTGCAAAAGTCATGGGAATTAGCTTTTATCACGGAATTCCGTACT
TTTATTCATTATATTCACAACGTAATGTTTTCTAAGGAAACGTGTGTGAA
CCATCCGGTGTCCCTAATAAAAATTCATTATATTAATCATAATGACATAA
TATTTTCTACGGACCCCGGCTTTTGCCAGTTGTGGCAAATTTGAGCTAGA
GAGAATTGCCACTACTGACCAAATCCAGTGTCCTTAGAAAACATTACATA
ATGACTATCATGAATCTTTAGGAACACCGGATGGTGCACACGTTCAACAA
CAGGCTACCAGTCAAGGTTATGTTCAAATTAGCCGATCGTCGGTTGTTTA
GCCGCAAAATACAATACAAATTTTTACCAATTATCATTGCTTTTCACGAA
ATAAATATGATGGACAGAATTCGTTTTAGTTCACTAAAAAAGTGGTCAAA
TTGCCCAGTTTTCTTTAAATACAGACTTTTTTATTTCATAATACTCATTT
ATTTCCAGGTATTGTATCATTTTCCGACATGTCGGCTTTTGATTGGGAAA
AATACGACATGGAAACGAAAACACGTCATTCAGAAATCGGTTCGTTGATT
CCCAACAAGTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCGTG
TTTAAAATATGTTTTCTGACTGATGTAACCAACAAAACTATGGCATGTTA
TACATTTTCTGTTAGAGAAACTATTCCTGAATCTGAAAATTCAAAAATTG
CATTGAAAAATTTTGATGAAGAAGAAAATGAAGACTTTTGCGAGGAAGAG
TATTTCAACTTTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAA
ATTTTTTTGCAGTAGATGGTGTATCTTTTACCGAACAATAAAAATTTTTG
CGGAAAATTTTTGTAAATGCTTCTATGTCTCGAAATCTTCGAAATAGTGG
TTTTTCATCAATTTTTCAACTGGATTTTGCTTAAAAAAACAGTCATAGCT
TTTGACACATCTTTTTAGAAAAATTTTCCGCAAAATTTAAAATAGTTCAA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACTCGCATGATTACTGTGC
GTCCCGACGATAAAATGAGAGGTTTTTATAAAGACATGACTCCAAGAGTA
AGGAAAAAATTTGGATTTGTTGTTTATGAGGACTTTGGAACCGCCATCGA
GGCTGAAGGTGATCTTCTACCTGGAGAGATGCCACATTTTGTGGGCGGTA
CATTGAGGGTGGATATTTTGAAATGTTTGAAGCATTTATTTTCACAGGAA
CCAGACGCTTTGAAATTGTTGTTGGAAACTTTTGACGAGATGGAAAAAGC
TGGTGAAATACCACACCCCAAACACATGGAGTGATTTTTTTAGCTAGCTA
CGTGATCATTCGGGGTTTAGACATCAAAGTTTCGATAACTCAGGGAAAAT
GGAGGAGTTAAATTTTTCAGATCACTCGTATATAACAGAATTGTTTGTAA
TTTAGTGTCTTGTTAAACTGATTTCATAGCCCTTTTTTGCTTGTTTTTGT
CGACTGTTACGCTTCTTATGCGCATCAAAGAAAAAGTTTCTTGATAAACA
TTGAATTTCATGTATGAAATAAAGGTCCGAACCAAACGATTTGAATTCGA
AATCTTCTTCAACCGAGGGGGGGGCAATGAATGAAAAAGTACCTACGTAC
TTACCAGGGGGTATAGCTATTTGCGTACGCTTGCGTACAGGGTCTTTTGT
TTCTTTTGCTAAAAATATTAGAAAAAAGAATTCAAATCCAGTGCCTTTAT
AACTGTCGATTGTTCTCTGTGTGGGTTCAATTTTGAGACCCTATTTTTTC
GTCTTAATTCTATTGCCCCTCCCTGGGGAACTATTCTATCCTAGTGGAGT
ATTTTTTGCTTCATTTTTTTTAAATCATCCTAATAA

Coding sequence (CDS) from alignment at sc0001204:28962..33247-

>TCONS_00034680 ID=TCONS_00034680|Name=TCONS_00034680|organism=Clytia hemisphaerica|type=CDS|length=3105bp|location=Sequence derived from alignment at sc0001204:28962..33247- (Clytia hemisphaerica)
GAACCAGACGCTTTGAAATTGTTGTTGGAAACTTTTGAGTATTGTATCAT
TTTCCGACATGTCGGCTTTTGATTGGGAAAAATACGACATGGAAACGAAA
ACACGTCATTCAGAAATCGGAGCATCAAACAGATGATTGGAAAAAAGAAG
GGATTGACTTTTATGTGTTGATGGCTCGAAGCATTTGTAGAACATACCCT
GAAGCTACTTCGAAAGGCTTGAAGAAGCAGAAAGGCGTTACAAATGGTTT
TCATTGAAGTGGAACAAAACATCAATGCGTCGTTTGATAACGAATTGGTT
TTGTGGTATAATGGTCATCGACCCAAACCTCAAGACCAAAGATGGCTCAC
CAATGCAATTCGTTTATGAATATTACGGACCAGAATCAAAATATCCTGAC
AAGATGGAAGATTTATTTCAAAAATATCAAATGACAGAAGCACAAAAGGG
CTTAGTAAATGGCATTAAGAATATTAAAAATTTACCGACCTTCATTGAAG
AGATGGATGATGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATT
GACATGCCCAAAGAACCTACAGACAATGATTTGAAGTTTTATAAGAATGC
TGTTGATGAAAGAGTTAGAAGGAACCAGACGCTTTGAAATTGTTGTTGGA
AACTTTTGAGTATTGTATCATTTTCCGACATGTCGGCTTTTGATTGGGAA
AAATACGACATGGAAACGAAAACACGTCATTCAGAAATCGGAGCATCAAA
CAGATGATTGGAAAAAAGAAGGGATTGACTTTTATGTGTTGATGGCTCGA
AGCATTTGTAGAACATACCCTGAAGCTACTTCGAAAGGCTTGAAGAAGCA
GAAAGGCGTTACAAATGGTTTTCATTGAAGTGGAACAAAACATCAATGCG
TCGTTTGATAACGAATTGGTTTTGTGGTATAATGGTCATCGACCCAAACC
TCAAGACCAAAGATGGCTCACCAATGCAATTCGTTTATGAATATTACGGA
CCAGAATCAAAATATCCTGACAAGATGGAAGATTTATTTCAAAAATATCA
AATGACAGAAGCACAAAAGGGCTTAGTAAATGGCATTAAGAATATTAAAA
ATTTACCGACCTTCATTGAAGAGATGGATGATGTGGAACAATTGATTTGG
GTCGTTGCCGTGGCAACCATTGACATGCCCAAAGAACCTACAGACAATGA
TTTGAAGTTTTATAAGAATGCTGTTGATGAAAGAGTTAGAAGGAACCAGA
CGCTTTGAAATTGTTGTTGGAAACTTTTGAGTATTGTATCATTTTCCGAC
ATGTCGGCTTTTGATTGGGAAAAATACGACATGGAAACGAAAACACGTCA
TTCAGAAATCGGAGCATCAAACAGATGATTGGAAAAAAGAAGGGATTGAC
TTTTATGTGTTGATGGCTCGAAGCATTTGTAGAACATACCCTGAAGCTAC
TTCGAAAGGCTTGAAGAAGCAGAAAGGCGTTACAAATGGTTTTCATTGAA
GTGGAACAAAACATCAATGCGTCGTTTGATAACGAATTGGTTTTGTGGTA
TAATGGTCATCGACCCAAACCTCAAGACCAAAGATGGCTCACCAATGCAA
TTCGTTTATGAATATTACGGACCAGAATCAAAATATCCTGACAAGATGGA
AGATTTATTTCAAAAATATCAAATGACAGAAGCACAAAAGGGCTTAGTAA
ATGGCATTAAGAATATTAAAAATTTACCGACCTTCATTGAAGAGATGGAT
GATGTGGAACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGACATGCC
CAAAGAACCTACAGACAATGATTTGAAGTTTTATAAGAATGCTGTTGATG
AAAGAGTTAGAAGGAACCAGACGCTTTGAAATTGTTGTTGGAAACTTTTG
AGTATTGTATCATTTTCCGACATGTCGGCTTTTGATTGGGAAAAATACGA
CATGGAAACGAAAACACGTCATTCAGAAATCGGAGCATCAAACAGATGAT
TGGAAAAAAGAAGGGATTGACTTTTATGTGTTGATGGCTCGAAGCATTTG
TAGAACATACCCTGAAGCTACTTCGAAAGGCTTGAAGAAGCAGAAAGGCG
TTACAAATGGTTTTCATTGAAGTGGAACAAAACATCAATGCGTCGTTTGA
TAACGAATTGGTTTTGTGGTATAATGGTCATCGACCCAAACCTCAAGACC
AAAGATGGCTCACCAATGCAATTCGTTTATGAATATTACGGACCAGAATC
AAAATATCCTGACAAGATGGAAGATTTATTTCAAAAATATCAAATGACAG
AAGCACAAAAGGGCTTAGTAAATGGCATTAAGAATATTAAAAATTTACCG
ACCTTCATTGAAGAGATGGATGATGTGGAACAATTGATTTGGGTCGTTGC
CGTGGCAACCATTGACATGCCCAAAGAACCTACAGACAATGATTTGAAGT
TTTATAAGAATGCTGTTGATGAAAGAGTTAGAAGGAACCAGACGCTTTGA
AATTGTTGTTGGAAACTTTTGAGTATTGTATCATTTTCCGACATGTCGGC
TTTTGATTGGGAAAAATACGACATGGAAACGAAAACACGTCATTCAGAAA
TCGGAGCATCAAACAGATGATTGGAAAAAAGAAGGGATTGACTTTTATGT
GTTGATGGCTCGAAGCATTTGTAGAACATACCCTGAAGCTACTTCGAAAG
GCTTGAAGAAGCAGAAAGGCGTTACAAATGGTTTTCATTGAAGTGGAACA
AAACATCAATGCGTCGTTTGATAACGAATTGGTTTTGTGGTATAATGGTC
ATCGACCCAAACCTCAAGACCAAAGATGGCTCACCAATGCAATTCGTTTA
TGAATATTACGGACCAGAATCAAAATATCCTGACAAGATGGAAGATTTAT
TTCAAAAATATCAAATGACAGAAGCACAAAAGGGCTTAGTAAATGGCATT
AAGAATATTAAAAATTTACCGACCTTCATTGAAGAGATGGATGATGTGGA
ACAATTGATTTGGGTCGTTGCCGTGGCAACCATTGACATGCCCAAAGAAC
CTACAGACAATGATTTGAAGTTTTATAAGAATGCTGTTGATGAAAGAGTT
AGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020145	XLOC_020145	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00034680-protein	TCONS_00034680-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001204	supercontig	sc0001204:28962..33247 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.432384	0.316438	0.95248	0	0	0.975786	0	1.43383	3.1004	2.49076	1.58703	1.5247	2.13161	1.8545	0.20259	0	0.452811	0.117658	0.720179	0.842792	0.146779	0	0	0	6.93904	6.89907	0.194579	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00034680 vs. Swiss-Prot (Human)

BLAST of TCONS_00034680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00034680 (transcript) - C. hemisphaerica