TCONS_00034676 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00034676
Unique Name	TCONS_00034676
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	243

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001204:73777..80397+

transcript sequence

>TCONS_00034676 ID=TCONS_00034676|Name=TCONS_00034676|organism=Clytia hemisphaerica|type=transcript|length=243bp
tatatatcaatacttttttttttctaaaatgacagatattacatatcttc
actatatatatatattgtcAGAAATAAAACGTCATCATTGTTGgttcatt
ttgaatatcttcTAAGCTTttaaggATGGTGAAGTTATTCATTTTCCTGT
TGGTTTTGATTGCCGAAAAAATAACAGTAAATGGACTACCAGAATCCATA
ACAGGTGGCTTAAAAGATAAACGAAGTGTTTTTGTTCGAGAGG

Run BLAST on NCBI

transcript from alignment at sc0001204:73777..80397+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00034676 ID=TCONS_00034676|Name=TCONS_00034676|organism=Clytia hemisphaerica|type=transcript|length=6621bp|location=Sequence derived from alignment at sc0001204:73777..80397+ (Clytia hemisphaerica)
tatatatcaatacttttttttttctaaaatgacagatattacatatcttc
actatatatatatattgtcAGAAATAAAACGTCATCATTGTTGgttcatt
ttgaatatcttcTAAGCTTttaaggtaattatttttttgttgatttggtA
TTTTGTAGTAGAATCGTTCTAAATTAAATGCAAGTAGAGCAGGGTTTTGG
AacagtatttttcaaaaagtcgaaaTAAACTCGGGAAATGTGTATTGTAT
GTCAAAGACGGTAGAAAACTTGTGTAGCAATCTTTAGCAAGTGTACAGNN
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ttttaattttggaaaagtagttatcgagatatggaggtataaagtcaaaa
gtcattattaaaaacagtcaaaaaacttcaaaaaagacaGAATCAAATTT
GTATCAGAACAAACATCTTTCCTTTGATCATTTGCTATTTCTTTGTCTTA
AAAGTTTCGTTAAGAAAGAAATAAGAAATATCgaattttaaccaaaaata
aaaagtaccaaAAGTAGCAAAAAGAGTTTTCAACCTTTGTTATTCTTTTC
TGAATCCCGGGGGGgaactacccttgtcgaccgacgggggtgctccgctg
aggttcgaaaaatggaccctacgtgggactcgaaatttgcgaaaaagtga
ccctgaatgggactgaaattccaaaattttctcaaattttctacttttcc
caaattttccaaaaaataggcaccctacgagggactgatttttctatttt
ggtgtttttgcgaccctacctgggactcgtggaggtttaaaaaggtaccc
tgaNcagtcaaaaaacgtcaaaaaagacagtatcaaatttgtataagaac
aaacaTCTTTCCTTTGATCATTTGCTATTTCTTTGTCTTAACAGTTTCGT
TAAGACAGAAATAAGTAATATCGAATTttagacaaaaataaaaagtacca
aAAGTAGCAAAACGAGTTCTCAACCTTTGTTATTCTTTTCCGAATCCTTC
cggtaaaagaaatcaaaatatgcTTCTCACTCGATGACTCTTTTTATTTG
TTAATCAATTAATTtgatactgtcttttttgacgttttttaactgttttt
tataatgacttttgactttatacctccatatctcgataaatacttttcca
aaattaaaaaatgatacatcaaaatttaagtttgcctttcctctttacca
ttaaaaagaatttagttaaaattcaatttttttctcttatactttttcgt
gggtcacccggtagcaatgcgagaagaaaaatgaaagaaatcagtcagaa
aatatagcgtttagcgaaaatgcataacgcaataaattcatcattgattg
ttgttgaTAGGGGGAGAGGGAacggttgtagggaaaaaataaatagaaag
ttctggtcgcaaaaatcagttttattgacaattgaatcatgctagatatg
gtgagcattgttatcaataatgtttttgtgtgaaaaacaatagaaatata
aggaaaaatccaatgaaaatctgcaaaagcggtgatttccgccattttca
accagttaaaaaatttttctcaaaaatcgaactcggccatgttttgagca
ttgcgaatacgcatctttctgcaaaaaatcagaaaaaactaagaatgaaa
tttcgagaaaatgtcaaaaaaccgttttttccgGCCGATATTTCCGGCAT
CTTcggccgaaaatttttttttttcgaaaaaggaagggaaacagtaaaga
aaaattaagtcggGCAAATatataccactttttagtgaaaataaagaact
tcctttcatacagaccaaatttcataacagtgctggaaaataatctacaa
tatatgtagATATACCCTTCTTAAACGATCCCCCCTCCTTGCTACCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCCCCCCCttgctccccccccccccctttttagtgaaaatttctgat
ccccccttcttcacttttttggaaggtgtcatcccccccttaaaaaaggg
ggggttcGAACTatgacggacatgggttaatttaaaggacctccaccggg
gtacccggaggtaggtaaAAAAAGCCTTACTACTTaccttttctctcttt
ttggacctaccttaaggtagtcctttaaattaactcttgtccgttcgttc
gttcgttcgttcgttcgttcgtctgctgccagcttttctcaggatcggct
cattagttttttctaatttttgcacaatgatgcaaaatggtaatgcccaa
aatatgacggagcccgattttcgaaaaaaaaaattttccggtcgCCAGGG
CCGGAAAAGTCCcggaaaaagcggttttttgggattttctcgagatttta
tcattagttttttctgattttttgtacatagaGGCGcgttagtactgccg
aaaagatgttgaaaaccgttttccgaaaaaaaaaatttctccggCCTGTA
GAACCGGACATATTTCCgtgacattttttcaacttatttgatcgtttttt
tacGGAAAAAGGTTCTCTATGGTGATACCCAAAACTTTGcatcattaaat
tttcaataaaatcgtttgtccggaactccttaaaaatcgccggaacagcc
gaaaaccagCGTAAAACAGATATCCTTCATTTTTTTGAGTTATActtgac
agattttcatgattttttgcacaatgatgcaaaatggcaatgccgaaaat
gtgacggagcccgattttcgaaaaattttccacccgaaaatgccagaaac
atgccggaaaaaccggttttttgacattttctcgaattttcatccttagt
tttcctgatcttttgcagaaagatgcgtactcgcgatgctcaaaacatga
ccgagttcgatttttgccggaaatttccgtttttgcagattttcattgga
ttttttccttttaagtctttgtttttttcaaacaaaaacataatttataa
gaatgtccacgattaaccatggttcaattttcaatgaaactggtTTTGgt
cagaacagccgagaatcgccagATTTCTAGAATTTCTCGAGCTTTTCTTG
TAATTATTCTGCATNGTTTTGgtcagaacagccgagaatcgccagATTTC
TAGAATTTCTCGAGCTTTTCTTGtaattattctgcattttcatactattg
ttgtcatttttcaattgtcttattacatcaatcttcaggtaggtccattc
agcatgtagcttgttattcttgaaaaaatatgataCTTGCTTGTTGAATC
TGAGTTCtgcttgttaaaaataaattcaaaacaaaccatttacatGAAAA
accttgttgcaaagaagttacaaactaaagtactaACTAATAGGAGGCTA
AGAGACTCAAATGCTAAAGAATTGCATAAAATATTTCCACACATACAGAT
CAACTTTCTGTCGCCCTGTTTTGGAATCATTATTCCAGTCGGGTCAATCT
GTATTAGCAGCAATAACTGCCGCGGGGTTGACCAGTCAGACCcgactgtt
tgtttacatttgttcgAATCGGGCCGGCCGATCACACCGctagccaaaat
ccaaaatttccgcTTTTCTGCCGAGttgatatagtctaagacaatagcta
cccccgaaaaaaattcccgtcttcacgtttgatcctcttagatgaaactt
gTCTTAGACTAGAGCATAGtctagagcatgttgcattgcactaatgcgaa
aaaaaaaacttctcgtgtccccaagccttaagtattttatttttatgttt
aggATGGTGAAGTTATTCATTTTCCTGTTGGTTTTGATTGCCGAAAAAAT
AACAGTAAATGGACTACCAGAATCCATAACAGGTGGCTTAAAAGATAAAC
GAAGTGTTTTTGTTCGAGAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020143	XLOC_020143	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00034676-exon-sc0001204-1491911889:73777..73900	TCONS_00034676-exon-sc0001204-1491911889:73777..73900	Clytia hemisphaerica	exon
TCONS_00034676-exon-sc0001204-1510915933:73777..73900	TCONS_00034676-exon-sc0001204-1510915933:73777..73900	Clytia hemisphaerica	exon
TCONS_00034676-exon-sc0001204-1575043694:73777..73900	TCONS_00034676-exon-sc0001204-1575043694:73777..73900	Clytia hemisphaerica	exon
TCONS_00034676-exon-sc0001204-1491911889:80279..80397	TCONS_00034676-exon-sc0001204-1491911889:80279..80397	Clytia hemisphaerica	exon
TCONS_00034676-exon-sc0001204-1510915933:80279..80397	TCONS_00034676-exon-sc0001204-1510915933:80279..80397	Clytia hemisphaerica	exon
TCONS_00034676-exon-sc0001204-1575043694:80279..80397	TCONS_00034676-exon-sc0001204-1575043694:80279..80397	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001204	supercontig	sc0001204:73777..80397 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.932618	0	1.94094	1.89891	0	0	0	1.03164	0	0	0	0.648157	1.96379	1.25578	0	0.556664	0	0	6.37793	8.58091	0	1.90727	1.9655	0.893463	4.60123	0.882646	1.17527	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00034676 vs. Swiss-Prot (Human)

BLAST of TCONS_00034676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00034676 (transcript) - C. hemisphaerica