TCONS_00034633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034633
Unique NameTCONS_00034633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034633 ID=TCONS_00034633|Name=TCONS_00034633|organism=Clytia hemisphaerica|type=transcript|length=703bp
TGGAATACTCAATCCTGTGTGTACTGTGGTACCAGATATATTGATAGCCA
CTATACCAGTTGGGGCCAATTTAATAATACGTGGCTTCTCTAGCTCATCA
CTTTTATATACTAGGACTTTTGACAAACAATTGTAAATACATTTAATTAA
GTGAGATTTTCCTACGCCCGCACCAcctgttaaaaaaattctcaatggTT
CTAGTAGTACAGGATTATTGGACTTGGAATTGTGCACATACATTTTCCCC
CAATTTAGCactatatcaaaaatatatctTTGCCTAGAATTTAAACATCT
TATATGGGTATTGATTTGGTCATCAGTTTGCAAGCCATGAACTGTTTGAG
TAAATGGTGCAAAATTTTGTTCGATATCATGactttcatcatcattttca
ctgtcTGGTGAGTTGCTCATTAGGTCTTGCATCATTTTCTTGTTGAGCAA
AGGCATCTTGATTATGCATAAGGTCATTGCGATAGTTTTGAAGTACTAAA
TCAACAAAATGACCATCAGGTTCAAAAATTTGCTTGTTCTCGTTAACAAC
TGCATTGACTTCATCTAAATTGAGCTTCAACACATATGAACCATCAAGCT
TCAAATCATTTTCTTCTGATCTAAATGGGTAAAACAACATTAGAAtatgg
tgggaaaatttttctggatgtttgtttttgttaggaGTGTAGTACCTGAA
AAC
Run BLAST on NCBI

protein sequence of TCONS_00034633-protein

>TCONS_00034633-protein ID=TCONS_00034633-protein|Name=TCONS_00034633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MTLCIIKMPLLNKKMMQDLMSNSPDSENDDESHDIEQNFAPFTQTVHGLQ
TDDQINTHIRCLNSRQRYIFDIVLNWGKMYVHNSKSNNPVLLEPLRIFLT
GGAGVGKSHLIKCIYNCLSKVLVYKSDELEKPRIIKLAPTGIVAINISGT
TVHTGLSIP
Run BLAST on NCBI

transcript from alignment at sc0001194:42094..42796

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034633 ID=TCONS_00034633|Name=TCONS_00034633|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0001194:42094..42796 (Clytia hemisphaerica)
GTTTTCAGGTACTACACtcctaacaaaaacaaacatccagaaaaattttc
ccaccataTTCTAATGTTGTTTTACCCATTTAGATCAGAAGAAAATGATT
TGAAGCTTGATGGTTCATATGTGTTGAAGCTCAATTTAGATGAAGTCAAT
GCAGTTGTTAACGAGAACAAGCAAATTTTTGAACCTGATGGTCATTTTGT
TGATTTAGTACTTCAAAACTATCGCAATGACCTTATGCATAATCAAGATG
CCTTTGCTCAACAAGAAAATGATGCAAGACCTAATGAGCAACTCACCAga
cagtgaaaatgatgatgaaagtCATGATATCGAACAAAATTTTGCACCAT
TTACTCAAACAGTTCATGGCTTGCAAACTGATGACCAAATCAATACCCAT
ATAAGATGTTTAAATTCTAGGCAAagatatatttttgatatagtGCTAAA
TTGGGGGAAAATGTATGTGCACAATTCCAAGTCCAATAATCCTGTACTAC
TAGAAccattgagaatttttttaacaggTGGTGCGGGCGTAGGAAAATCT
CACTTAATTAAATGTATTTACAATTGTTTGTCAAAAGTCCTAGTATATAA
AAGTGATGAGCTAGAGAAGCCACGTATTATTAAATTGGCCCCAACTGGTA
TAGTGGCTATCAATATATCTGGTACCACAGTACACACAGGATTGAGTATT
CCA

Coding sequence (CDS) from alignment at sc0001194:42094..42796

>TCONS_00034633 ID=TCONS_00034633|Name=TCONS_00034633|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001194:42094..42796 (Clytia hemisphaerica)
ATGACCTTATGCATAATCAAGATGCCTTTGCTCAACAAGAAAATGATGCA
AGACCTAATGAGCAACTCACCAgacagtgaaaatgatgatgaaagtCATG
ATATCGAACAAAATTTTGCACCATTTACTCAAACAGTTCATGGCTTGCAA
ACTGATGACCAAATCAATACCCATATAAGATGTTTAAATTCTAGGCAAag
atatatttttgatatagtGCTAAATTGGGGGAAAATGTATGTGCACAATT
CCAAGTCCAATAATCCTGTACTACTAGAAccattgagaatttttttaaca
ggTGGTGCGGGCGTAGGAAAATCTCACTTAATTAAATGTATTTACAATTG
TTTGTCAAAAGTCCTAGTATATAAAAGTGATGAGCTAGAGAAGCCACGTA
TTATTAAATTGGCCCCAACTGGTATAGTGGCTATCAATATATCTGGTACC
ACAGTACACACAGGATTGAGTATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020106XLOC_020106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034633-exon-sc0001194-1491911889:42094..42796TCONS_00034633-exon-sc0001194-1491911889:42094..42796Clytia hemisphaericaexon
TCONS_00034633-exon-sc0001194-1510915933:42094..42796TCONS_00034633-exon-sc0001194-1510915933:42094..42796Clytia hemisphaericaexon
TCONS_00034633-exon-sc0001194-1575043694:42094..42796TCONS_00034633-exon-sc0001194-1575043694:42094..42796Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034633-proteinTCONS_00034633-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001194supercontigsc0001194:42094..42796 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.80171	2.3242	2.73081	1.89967	1.24972	0.845894	2.15683	1.10271	1.09923	0.79293	0.727605	1.16549	0.917826	1.36835	1.08616	1.2774	1.06287	1.05281	0.799312	1.53643	2.18864	2.18419	0.506456	1.53155	1.00468	1.12161	3.41786	2.83841	2.71829	1.83887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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