TCONS_00034395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034395
Unique NameTCONS_00034395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034395 ID=TCONS_00034395|Name=TCONS_00034395|organism=Clytia hemisphaerica|type=transcript|length=1430bp
ctttaccgtagaaatcttgttaaattgtgaaaaaactgcgtaaacttccc
aaacgggaagttCCAACCCAATCGggttttccttattttcaactttttcc
cgcttcttcccGATCTGGAAGTCCGTTTTTAAACTCTTGCCCATTCTTCC
TGAACGGGAAGCCTTGAAGCCTCGCATGTTTTTAATTCCACCACGCTGCC
TGCTGCTCAACCAccagattttgaattttgattgaaacTAAGCAATGGAT
TGCAACAACTTTGAAGAAGAAGAACCAAACATGGAAGAAACACAAAATCA
AACTCAACAAGTTATGGAAATCACACCAGAACAAATGGGTCTCTTATACC
AATTGGTGCAACAAGACCCTCGGTTTCAATCACATGAAAACGTTACCCTT
TTGCAACCTCTCATCCCTCAGCAGCAACCTAACAAAAATTCCAGTAATAT
GTCTTATGGAGAAACATCAGAAGATTATTCAGCTAATACTAGTAGTAACC
TATCAGTCTTGGCAGATGCCTCACGCTTATTCCAAGAACCTCTTGCAAGT
CAGCCATCAACAGATACTATAAAGATTATTACTGTTAAACAATTAGGAAA
TGGAACCTGAATGAACCCAATACCCTGTATATTCATTATCCCAATATCCC
AACCCGAAGACCCAAACACCCGAAGACATGACCCCTCCGAATCATCACAA
GGGACCCATCAGGATTCAATACGAAGCTGAACCTAAAAGGCGTGGCACTG
CATACGCGAAGCGGTCAGCAACCTTGAAGCAAAAAGCGCATGAGCTCAAT
GTGATTACTGGCGCAAAAGTGAGATTATTGATCAATAGTAATGATTCCAA
TGATGAGAAGAGTTACGGGATGCCCGTAACTGCTGTCATGGGGACTCAAA
CagaattttcttcttcaattgcTTCAGTTCCACAAAGTATTTTTGGGACA
CCATCAGCCCACCCCTTATTGACAAGGAAGGATAAGGAGACAACCCCAAC
TGCTACCGTCGTAGAAGAAAAATGTTGGTTTTCccagaaagttaaaaatt
tacCTGGAATAAAACGTAAACGTTTAGATTTGGAGAAAGAAGGACAACCT
GAGTCAAAAAGGAACACGTTGAAATGTTTGATATGCAACGCTCTTCCAAA
ATCGGAAAAAGACAAGCAACTTAGGAAAGACCATGGTGTGAAAGCTCGAG
TTCTTACTTGTGGTTTTAAGGATTGTGGTAAAAGGGTGCATGGTGTTTGT
GCTGGAATTGAGGTCAAGGCCAAAGTGAAATTGCCCTATTACTTGTGCCC
AGAACACAAGTCTTCAAGTAATGAATTGACACTGATATTTAAAGAGAAGG
TTTCTTTATATACAAGACTTTTTTATATACTAGACTTTTTTATATACAAG
Actacaaagtttttcaaattttgatttatg
Run BLAST on NCBI

protein sequence of TCONS_00034395-protein

>TCONS_00034395-protein ID=TCONS_00034395-protein|Name=TCONS_00034395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MTPPNHHKGPIRIQYEAEPKRRGTAYAKRSATLKQKAHELNVITGAKVRL
LINSNDSNDEKSYGMPVTAVMGTQTEFSSSIASVPQSIFGTPSAHPLLTR
KDKETTPTATVVEEKCWFSQKVKNLPGIKRKRLDLEKEGQPESKRNTLKC
LICNALPKSEKDKQLRKDHGVKARVLTCGFKDCGKRVHGVCAGIEVKAKV
KLPYYLCPEHKSSSNELTLIFKEKVSLYTRLFYILDFFIYKTTKFFKF
Run BLAST on NCBI

transcript from alignment at sc0001159:81635..85659+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034395 ID=TCONS_00034395|Name=TCONS_00034395|organism=Clytia hemisphaerica|type=transcript|length=4025bp|location=Sequence derived from alignment at sc0001159:81635..85659+ (Clytia hemisphaerica)
ctttaccgtagaaatcttgttaaattgtgaaaaaactgcgtaaacttccc
aaacgggaagttCCAACCCAATCGggttttccttattttcaactttttcc
cgcttcttcccGATCTGGAAGTCCGTTTTTAAACTCTTGCCCATTCTTCC
TGAACGGGAAGCCTTGAAGCCTCGCATGTTTTTAATTCCACCACGCTGCC
TGCTGCTCAACCAccagattttgaattttgattgaaacTAAGCAATGGAT
TGCAACAACTTTGAAGAAGAAGAACCAAACATGGAAGAAACACAAAATCA
AAGTATGTATCTTCTATCGAGTCTGTTATTTTTGTCTACTCCACTGCTGT
TTTGGAGGCAATGCTTTACATTTTCCCTCCCTTCATGCAAGCTTatctat
gtttttattttatcaagtCCAAGTGGGACTAGTCTAAAATTCTACTATAT
GTATCTAGTCGAAAAATTTGAAGCTAATCAAAACAATCAGTTTTTTGATT
TACTCAAATTCATCGAAGTACGAAGTCTAATCAGTTTGAGATCTGAAAAA
GATTGGAAAATTTTATTAGTAATTCGATTAATTAGATTGAGCtttgattg
cttcgattactGTTTGATTACAGTTTAATGACTACTCTTTGCATATGCTT
TCCAAGCTTAAAgttatcgaactaatcgaacaatGAAGAAAAGAGAGGCT
GCAAactgttttttaattttattttcaaaattttgtaagCAACACATGCA
TACTTTTTGAACACAATGGTTGTGAGCAGCTAGCAAGTTTAATCGATAGC
TAAAATTAATATTAACCGTTTGATTAGACATCGATTGGAATCAATAATCA
ATACCGtgataccgtgaagtcgggtaacttgcatcagtggaggtaactcc
agttgagatacaaatatatcatttccctcttgccagtaagagggtttttg
gttcaaatgacCATCTAATCCTAAGGTTTCCGTCCATATTGACATAACCT
AGTTGCAACACTGAATAATTGAGCTATCAATTAAAATAGTTGATACAATC
AATACCAATAGGTAATCAATACTTTaatcaatattcaaaattttttttac
cttgattagctatcgattattGACTCTAATCGATATCTAATTGATTGATT
AATATTGATTAGCTCTCTAATAAAACTGATGATTGATTTTATCGATTCTA
AAGGTACATAAGCCTGGGTTTACAAACTTGAAATTAAGATCAGACTGTAA
ACAcagatttttatcaaaatcaatgATATATTACAGCCTGGCAGTCTCAT
AATCTTGCTCTTTCCACAATTTCATTTGATATCCTTGCTTGATGGAGGAG
AACCTACAACAGATTCAAGCTGAGCTCTATTTATATTGACCCTCATCACC
CATAGACTAAAAGTAGTTTAAAGTCATAAAAGTTAATTACTCCTCTGTGT
ACTCCCAAGTTGGGGAATTTCAAATCATTCTTGATCAATTACATTTATGA
TAATCTAAGCAGAAACAAGTTAGGTAAGGAAGCTTGAATCTTGAACGAGC
AAGATAAAGAGACTgcctggatacccaggctaactggaaatttaaattta
ttgcTGTTTTATTTTAAGCTCAACAAGTTATGGAAATCACACCAGAACAA
ATGGGTCTCTTATACCAATTGGTGCAACAAGACCCTCGGTTTCAATCACA
TGAAAACGTTACCCTTTTGCAACCTCTCATCCCTCAGCAGCAACCTAACA
AAAATTCCAGTAATATGTCTTATGGAGAAACATCAGAAGATTATTCAGCT
AATACTAGTAGTAACCTATCAGTCTTGGCAGATGCCTCACGCTTATTCCA
AGAACCTCTTGCAAGTCAGCCATCAACAGATACTATAAAGGTGAGCTCTT
AAGTGTATCAGGTCAACAGCTTCGTCTCATTTTACTTGATGTTGATGCTT
TTTTAATTTAAACAGTAAGcagcatttcaacttttctgtCAGTTGACAGA
AATTTGTTTACTTGAATTTCTAACAAGGGTTTCTCTTATTTTAGCAATTT
TGAGTAGTGGAATTTGTTATATAATTCTTTTATTAACCAGGTTAGACCAT
GTTGTACtgggtaaatgttttttctagaTTGCTCAAAGGAAGCAACTGCA
AGGGAGCACTGCATAATGATATATTAAACTATTGCATTTCTCAGTATTTT
AAAAACTGACTTTAAATCCTCATTGTTTATTGTAAAAAACTCAAATATGT
TCTTGTATAATTCAAAGATAAATTTGCATACATTACTATGTACCACTTAT
TTTTCAGATTATTACTGTTAAACAATTAGGAAATGGAACCTGAATGAACC
CAATACCCTGTATATTCATTATCCCAATATCCCAACCCGAAGACCCAAAC
ACCCGAAGACATGGTACTGTAACCCTGATTTCCTGTTGTATGTATTTTAT
GTCCAAATCCTGGTTATCATatatttctgaaaagaaaaatgtaGTTTTAG
GGGAAATCAAAGgagaaaataatataatttagGGTCATCTTATCTTCTTa
cattctttttgaaaacaggtcaaataaattttaagcaaataaatGGGTAA
TTCAAACTACATTTTGGGAAATTTGTATTATGTATTTATAGCAATTGCCT
CATCTTTGCTGTAATTCAAAGagctttttttgagaaatcatGAATAGAGC
TAATGCATGCAATGTTTAGCTGACCATGTGCTCTTACtggtcatattttt
ttattgattcaTTGCATTGTCTTTATTCTAGACCCCTCCGAATCATCACA
AGGGACCCATCAGGATTCAATACGAAGCTGAACCTAAAAGGCGTGGCACT
GCATACGCGAAGCGGTCAGCAACCTTGAAGCAAAAAGTAAGAGGTCCACT
CGTTTTAGTTTGGAGATTGTTGTTTCAAAGCAGATATCCCTAAAGGGACT
CGCATTTGAATTTTTGGCACTTGATAACTCGGTGATATATTActcagttt
ttgttttttatttcacatACTCGCTAATTGTACTTCTAGAAACCCCAGAT
AATGGCAAATAAAGGCTAAATCAGGATATTTAGCGTAAAATAAGGGACAT
AGTTTGCAAAAATAGGAAGAAGTAAGATTTATTGGAACCAAAACTTTTCG
GTCATGTTGACATTCATTACCANCAGATTATGGCAAATAAAGGCTAAATC
AGGATATTTAGTGTAAAATAAGGGACATAGTTTGCAAAAATAGGAAGAAG
TAAGATTTATTGGAACCAAAACTTTTTGGTCATGTTGACATTCATTACCA
CCCCCCCCcagttttttttggcaaatcttAGTTACAAGATACAACCTTCC
ACTTTtcattctttctgatttttgttcTAGGCGCATGAGCTCAATGTGAT
TACTGGCGCAAAAGTGAGATTATTGATCAATAGTAATGATTCCAATGATG
AGAAGAGTTACGGGATGCCCGTAACTGCTGTCATGGGGACTCAAACagaa
ttttcttcttcaattgcTTCAGTTCCACAAAGTATTTTTGGGACACCATC
AGCCCACCCCTTATTGACAAGGAAGGATAAGGAGACAACCCCAACTGCTA
CCGTCGTAGAAGAAAAATGTTGGTTTTCccagaaagttaaaaatttacCT
GGAATAAAACGTAAACGTTTAGATTTGGAGAAAGAAGGACAACCTGAGTC
AAAAAGGAACACGTTGAAATGTTTGATATGCAACGCTCTTCCAAAATCGG
AAAAAGACAAGCAACTTAGGAAAGACCATGGTGTGAAAGCTCGAGTTCTT
ACTTGTGGTTTTAAGGATTGTGGTAAAAGGGTGCATGGTGTTTGTGCTGG
AATTGAGGTCAAGGCCAAAGTGAAATTGCCCTATTACTTGTGCCCAGAAC
ACAAGTCTTCAAGTAATGAATTGACACTGATATTTAAAGAGAAGGTTTCT
TTATATACAAGACTTTTTTATATACTAGACTTTTTTATATACAAGActac
aaagtttttcaaattttgatttatg

Coding sequence (CDS) from alignment at sc0001159:81635..85659+

>TCONS_00034395 ID=TCONS_00034395|Name=TCONS_00034395|organism=Clytia hemisphaerica|type=CDS|length=2241bp|location=Sequence derived from alignment at sc0001159:81635..85659+ (Clytia hemisphaerica)
ATGACCCCTCCGAATCATCACAAGGGACCCATCAGGATTCAATACGAAGC
TGAACCTAAAAGGCGTGGCACTGCATACGCGAAGCGGTCAGCAACCTTGA
AGCAAAAAGCGCATGAGCTCAATGTGATTACTGGCGCAAAAGTGAGATTA
TTGATCAATAGTAATGATTCCAATGATGAGAAGAGTTACGGGATGCCCGT
AACTGCTGTCATGGGGACTCAAACagaattttcttcttcaattgcTTCAG
TTCCACAAAGTATTTTTGGGACACCATCAGCCCACCCCTTATTGACAAGG
AAGGATAAGGAGACAACCCCAACTGCTACCGTCGTAGAAGAAAAATGTTG
GTTTTCccagaaagttaaaaatttacCTGGAATAAAACGTAAACGTTTAG
ATTTGGAGAAAGAAGGACAACCTGAGTCAAAAAGGAACACGTTGAAATGT
TTGATATGCAACGCTCTTCCAAAATCGGAAAAAGACAAGCAACTTAGGAA
AGACCATGGTGTGAAAGCTCGAGTTCTTACTTGTGGTTTTAAGGATTGTG
GTAAAAGGGTGCATGGTGTTTGTGCTGGAATTGAGGTCAAGGCCAAAGTG
AAATTGCCCTATTACTTGTGCCCAGAACACAAGTCTTCAAGTAATGAATT
GACACTGATATTTAAAGAGAAGGTTTCTTTATATACAAGACTTTTTTATA
TACTAGACTTTTTTATATACAAGActacaaagtttttcaaattttgaATG
ACCCCTCCGAATCATCACAAGGGACCCATCAGGATTCAATACGAAGCTGA
ACCTAAAAGGCGTGGCACTGCATACGCGAAGCGGTCAGCAACCTTGAAGC
AAAAAGCGCATGAGCTCAATGTGATTACTGGCGCAAAAGTGAGATTATTG
ATCAATAGTAATGATTCCAATGATGAGAAGAGTTACGGGATGCCCGTAAC
TGCTGTCATGGGGACTCAAACagaattttcttcttcaattgcTTCAGTTC
CACAAAGTATTTTTGGGACACCATCAGCCCACCCCTTATTGACAAGGAAG
GATAAGGAGACAACCCCAACTGCTACCGTCGTAGAAGAAAAATGTTGGTT
TTCccagaaagttaaaaatttacCTGGAATAAAACGTAAACGTTTAGATT
TGGAGAAAGAAGGACAACCTGAGTCAAAAAGGAACACGTTGAAATGTTTG
ATATGCAACGCTCTTCCAAAATCGGAAAAAGACAAGCAACTTAGGAAAGA
CCATGGTGTGAAAGCTCGAGTTCTTACTTGTGGTTTTAAGGATTGTGGTA
AAAGGGTGCATGGTGTTTGTGCTGGAATTGAGGTCAAGGCCAAAGTGAAA
TTGCCCTATTACTTGTGCCCAGAACACAAGTCTTCAAGTAATGAATTGAC
ACTGATATTTAAAGAGAAGGTTTCTTTATATACAAGACTTTTTTATATAC
TAGACTTTTTTATATACAAGActacaaagtttttcaaattttgaATGACC
CCTCCGAATCATCACAAGGGACCCATCAGGATTCAATACGAAGCTGAACC
TAAAAGGCGTGGCACTGCATACGCGAAGCGGTCAGCAACCTTGAAGCAAA
AAGCGCATGAGCTCAATGTGATTACTGGCGCAAAAGTGAGATTATTGATC
AATAGTAATGATTCCAATGATGAGAAGAGTTACGGGATGCCCGTAACTGC
TGTCATGGGGACTCAAACagaattttcttcttcaattgcTTCAGTTCCAC
AAAGTATTTTTGGGACACCATCAGCCCACCCCTTATTGACAAGGAAGGAT
AAGGAGACAACCCCAACTGCTACCGTCGTAGAAGAAAAATGTTGGTTTTC
ccagaaagttaaaaatttacCTGGAATAAAACGTAAACGTTTAGATTTGG
AGAAAGAAGGACAACCTGAGTCAAAAAGGAACACGTTGAAATGTTTGATA
TGCAACGCTCTTCCAAAATCGGAAAAAGACAAGCAACTTAGGAAAGACCA
TGGTGTGAAAGCTCGAGTTCTTACTTGTGGTTTTAAGGATTGTGGTAAAA
GGGTGCATGGTGTTTGTGCTGGAATTGAGGTCAAGGCCAAAGTGAAATTG
CCCTATTACTTGTGCCCAGAACACAAGTCTTCAAGTAATGAATTGACACT
GATATTTAAAGAGAAGGTTTCTTTATATACAAGACTTTTTTATATACTAG
ACTTTTTTATATACAAGActacaaagtttttcaaattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_019938XLOC_019938Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034395-proteinTCONS_00034395-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034395-exon-sc0001159-1491911889:81635..81936TCONS_00034395-exon-sc0001159-1491911889:81635..81936Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1510915933:81635..81936TCONS_00034395-exon-sc0001159-1510915933:81635..81936Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1575043694:81635..81936TCONS_00034395-exon-sc0001159-1575043694:81635..81936Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1491911889:83253..83524TCONS_00034395-exon-sc0001159-1491911889:83253..83524Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1510915933:83253..83524TCONS_00034395-exon-sc0001159-1510915933:83253..83524Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1575043694:83253..83524TCONS_00034395-exon-sc0001159-1575043694:83253..83524Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1491911889:83942..84047TCONS_00034395-exon-sc0001159-1491911889:83942..84047Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1510915933:83942..84047TCONS_00034395-exon-sc0001159-1510915933:83942..84047Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1575043694:83942..84047TCONS_00034395-exon-sc0001159-1575043694:83942..84047Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1491911889:84416..84520TCONS_00034395-exon-sc0001159-1491911889:84416..84520Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1510915933:84416..84520TCONS_00034395-exon-sc0001159-1510915933:84416..84520Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1575043694:84416..84520TCONS_00034395-exon-sc0001159-1575043694:84416..84520Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1491911889:85015..85659TCONS_00034395-exon-sc0001159-1491911889:85015..85659Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1510915933:85015..85659TCONS_00034395-exon-sc0001159-1510915933:85015..85659Clytia hemisphaericaexon
TCONS_00034395-exon-sc0001159-1575043694:85015..85659TCONS_00034395-exon-sc0001159-1575043694:85015..85659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001159supercontigsc0001159:81635..85659 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65543	1.34871	4.12013e-06	0.918822	0.327142	0.127516	0	3.75403e-05	0.769115	0.828559	0.000575984	0.00873639	0.265183	2.50425e-07	2.64569	4.9339	0.000309226	5.45835	2.41938	1.89805	2.64879	4.37239	1.40286e-08	2.05765	0.900093	0	7.57973	4.58277	4.60509	3.42769
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR002100TF_MADSbox
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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