TCONS_00034395-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034395-protein
Unique NameTCONS_00034395-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034395-protein ID=TCONS_00034395-protein|Name=TCONS_00034395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MTPPNHHKGPIRIQYEAEPKRRGTAYAKRSATLKQKAHELNVITGAKVRL
LINSNDSNDEKSYGMPVTAVMGTQTEFSSSIASVPQSIFGTPSAHPLLTR
KDKETTPTATVVEEKCWFSQKVKNLPGIKRKRLDLEKEGQPESKRNTLKC
LICNALPKSEKDKQLRKDHGVKARVLTCGFKDCGKRVHGVCAGIEVKAKV
KLPYYLCPEHKSSSNELTLIFKEKVSLYTRLFYILDFFIYKTTKFFKF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_019938XLOC_019938Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034395TCONS_00034395Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR002100TF_MADSbox
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 149..211
e-value: 1.1E-4
score: 31.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 126..224
e-value: 1.2E-5
score: 24.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 19..56
e-value: 3.1E-7
score: 29.6
IPR002100Transcription factor, MADS-boxGENE3D3.40.1810.10coord: 18..110
e-value: 1.9E-7
score: 30.3
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 6..55
score: 11.017
IPR002100Transcription factor, MADS-boxSUPERFAMILY55455SRF-likecoord: 8..57
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 119..211

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034395-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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