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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00031973 ID=TCONS_00031973|Name=TCONS_00031973|organism=Clytia hemisphaerica|type=transcript|length=3430bp
TTTTGTCCCATGTTCATCCCTCAGTAAAAGGTTTATTTCCCCAGCAGTTA
ATTCCAAACTTACTTCCTGCcgggaaattgaaatttttcagccAGAACTA
GGAAGTCCTAACTCAGGACCCGGCAATTCTGCAAGTGGTGAATGGCTACA
AGATACCATTCACATCCGTACCTGTTCAGAACAAATTTCCCCATCAACCT
CCCATGAAATGGGAGGAAGAGTTGTTGATAGAAGCAGAGATCCAGAAAAT
GCTACAAAAGGGTGCAATACAAAAAGTACAATCCCCTTCTCCAAATCACT
TCCTAAGTTCAATCTTCCTGGTACCAAAATCAGATTCCGGTCACAGGCCA
GTCAtcaatctgaaaaatctaaacaaatatGTTCCCTATCTTCACTTCAA
AATGGAAACTTTGGGGCTACTGAGAGAACTGCTGGTAAAGGGAGATTTTA
TGGTCAAATTAGACTTGCGAGACGCATACTTCAGCGTCCCCCTTCACAAT
CTTTCTCGGAAGTATGTAAGTTTTCGTTGGAAAGGGAAAATATACGAGTT
TCTATGCCTTTGTTTTGGCCTGGGTCCTGCGCCAAGGATTTTTACCAAAT
TGATGAAGATTCCTATAGCTTTGTTAAGACGGCTGAACGTTCGCCTAATT
ATCTATTTGGACGACTGCCTATTGATGGCCTCATCGATAGAGGAACTCCT
GATGGCCAGGGACACCCTCGTATTTGTACTTCAACACTTGGGGTTTTCCA
TAAATTTCGAGAAGTCGGTAATGGATCCAACTCACAACATTCGCTTCCTA
GGGGTAGAAGTGAATTCTCTAGACATGATAGTGAGCCTTCCCCAGGACAA
GGTAGCCAAACTAGTTGCCCAGTGCCAAAAACTACTAGTACCCCCAAAGG
TTTCGTTGAGGGAGTTAACCAGTTTGTTGGGTCGCCTCTCTTCTTCAGCT
GTGGCAGTTCTGCCAGCCCCCCTTCGTTACAGGGCCCTTCAGAGGTTCCA
GATACAAGAGTTAGCATGTCACAACAACTTCGAGGCATTAGTTGTCCTGA
CGGAAGAAGTGAAAGAGGAGTTGGATTGGTGGATTCAGAACTTAGAACTT
TCCAATGGGCGTTCTTTAATAACAGCCCCTCCTCAGTTAATAATAGCTTC
GGATGCTTCCAAGGAAGGCTGGGGAGCATTTTGCAAGGGTCAGGAAACAG
GGGGCCCGTGGTCATCTCGGGAGGCAGAAATGCATATCAATGTTCTGGAA
CTGAAAGCAGCAAAACTGGCGATTCGTTGCTTTCACAGGGAGTTCCCAAA
TATCCAGTCGATACATTTGCAAATGGACAACATCACAGCCCTAGCTTACT
TGAAAAAGATGGGGGGAACAAAGAGTCAAGCCTTAATAGATTTGAGCAAG
GAGATCTGGGATTATCTACTAGACCACCAGATCACGATTACTGTGGAGTA
CCTCCCTGGAGTTCTCAATGTGGAAGCAGACAGGCAATCTCGGAGTGTGA
AGGATTCAAGCGAATGGAAATTAGACCCTCACATATTCAAGAAAATATGT
CTGCTAAGAGGATCTCCGGACACAGACCTGTTTGCTTCCAGATTGTCTCA
CCAGGTTCCTCTATATTTTTCATGGAAGATAGACCCTTACAGCAGGGGGC
AGGACGCCTTCCAGGCGAGCTGGACACAAATAAGGGGGTATGCATTTCCT
CCATTTTGCCTCATCGGGAAAGTTTTAAAAAAGGTACTTTCAGACAGAGC
AACCATTCTGATAGTAACTCCTGCTTGGCAAACCCAGTCATGGTTTCCCC
AGCTCCTTCAGTTATCAATCCAAAACCCAATATTACTCCCGCAAAGGCGA
AATCTGTTGTCAAACCCAAAAGGGGAATGGCATCCACTTCTGCTGAATCA
AAGTCTCCAGTTAGTGGTCTGGACAGTTTCAGGGATAGAATCGAAGCAAC
AGGCATTTCTAAGAAAGCTTCCTCTCTCATCGCAGCTGCAAGAAGGGACG
GGACAGTCGCTCATTACCAATCGGCCTGGAGTAAGTGGAGTGGCTGGTGT
GATAAAAGGCAGATTGATCCTATTCGATCTCCTCTAAATTTTGTCATTGA
TTTCCTCTCTGACTGCTTCGATGAGGGCAAGGAGTTCAATACCATTGCTG
GTTACAGATCTGCTATCTCAGCTTATCATGACCCAATTGATGGGGTAAGG
GTTGGGAAACACCCTCTAGTTTCTTCATTGATGGCAGGGATTCACAACAA
AAGGTTTCCACAGCCCAGATACACTTTCATTTGGGATGTTGAGAAGGTCG
TGAGTTATCTTAGTACAATACCTTCACATTCTGAGAATGTGTCAGATAAA
CTGTTGACTTTGAAGCTGACTATGCTATTAGCCTTGACTTCAGCGGCCAG
GGCTCATGAGATTACATATTTAGATGAACGCTTCCTTGTTAAACATCATT
CAAAGTATACTTTTCACTTTGGGAAACCCACAAAAACTGCAAAAGTGGGT
AAACTTAGACCCCCAATAGAATTTCACCATTTTGAAAGTGATTTGAATCT
GTGTGTATGCCGCCACATTGATTTGTACTTGGAAAGAAGTGCTTCATGGA
GAAGGGAGAAAGGGCAATTATTATTGAGTTTCATTAATCCACATGGTCCG
GTTAAATCCTCAACTGTTTCTGGATGGGTCCTTGAGTGCTTGTCACAATC
TGGTGTAGATACTGCAACATTTAAAGGCCATTCTACTAGATCTGCCTCAA
CCTCTAAGGCCAGTTCTCTTGGAATTCCTCTAAAGGAAATTTTGAAAAGG
GGATATTGGGCCAATTCTACTGTGTTTGAACGGCATTATAAGAAGGAAAT
GTCTCAGGAAATCCCTAAGTTTGATGCCGCCGTTCTCGGGAAGCCGCTTT
GAACAGAGGTCTTGAGAGATGACTTTCAGACTCAAGGCCTGAAAGGGCGT
ATACCAGTATTAGATCGGGCGGAGATTTTATGCAATGAAATTGAGGATTG
TGCAAGGGCCCGAAGGGCCCGCAGTGCAATCCcgattttataaataaaat
cgAAGCCAACGATCTAATACTGCCCACCCTCCTTCCCCTACTAACACCTA
TCCTCATGATTATTTTCTTTCAGGACGATACTTTCGAGGAAGACGAGGAC
GTGGTGGTTATCGAGGAAACTGATTTTAGCATTTTATGATATAGAATATA
TGATATAGTCGGAAAAGACTTTGAGTTACATATTTGTGTCATTTCTTGTT
TTCACTAAGTTGCTTTGTTTGCGCAAAATTGGTGCTTTtaattatttcaa
tattttcgacCATTACACATTATTAAAACTGAAATAATAACTTTATAGTG
GTCTTGAGATTTGACTTTCAGACTCTCGGCGTGAAAGGGCGTATACCAGT
ATTAGATCGTTGGCTTcgattttatttata Run BLAST on NCBI transcript from alignment at sc0000937:7026..10455+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00031973 ID=TCONS_00031973|Name=TCONS_00031973|organism=Clytia hemisphaerica|type=transcript|length=3430bp|location=Sequence derived from alignment at sc0000937:7026..10455+ (Clytia hemisphaerica)
TTTTGTCCCATGTTCATCCCTCAGTAAAAGGTTTATTTCCCCAGCAGTTA
ATTCCAAACTTACTTCCTGCcgggaaattgaaatttttcagccAGAACTA
GGAAGTCCTAACTCAGGACCCGGCAATTCTGCAAGTGGTGAATGGCTACA
AGATACCATTCACATCCGTACCTGTTCAGAACAAATTTCCCCATCAACCT
CCCATGAAATGGGAGGAAGAGTTGTTGATAGAAGCAGAGATCCAGAAAAT
GCTACAAAAGGGTGCAATACAAAAAGTACAATCCCCTTCTCCAAATCACT
TCCTAAGTTCAATCTTCCTGGTACCAAAATCAGATTCCGGTCACAGGCCA
GTCAtcaatctgaaaaatctaaacaaatatGTTCCCTATCTTCACTTCAA
AATGGAAACTTTGGGGCTACTGAGAGAACTGCTGGTAAAGGGAGATTTTA
TGGTCAAATTAGACTTGCGAGACGCATACTTCAGCGTCCCCCTTCACAAT
CTTTCTCGGAAGTATGTAAGTTTTCGTTGGAAAGGGAAAATATACGAGTT
TCTATGCCTTTGTTTTGGCCTGGGTCCTGCGCCAAGGATTTTTACCAAAT
TGATGAAGATTCCTATAGCTTTGTTAAGACGGCTGAACGTTCGCCTAATT
ATCTATTTGGACGACTGCCTATTGATGGCCTCATCGATAGAGGAACTCCT
GATGGCCAGGGACACCCTCGTATTTGTACTTCAACACTTGGGGTTTTCCA
TAAATTTCGAGAAGTCGGTAATGGATCCAACTCACAACATTCGCTTCCTA
GGGGTAGAAGTGAATTCTCTAGACATGATAGTGAGCCTTCCCCAGGACAA
GGTAGCCAAACTAGTTGCCCAGTGCCAAAAACTACTAGTACCCCCAAAGG
TTTCGTTGAGGGAGTTAACCAGTTTGTTGGGTCGCCTCTCTTCTTCAGCT
GTGGCAGTTCTGCCAGCCCCCCTTCGTTACAGGGCCCTTCAGAGGTTCCA
GATACAAGAGTTAGCATGTCACAACAACTTCGAGGCATTAGTTGTCCTGA
CGGAAGAAGTGAAAGAGGAGTTGGATTGGTGGATTCAGAACTTAGAACTT
TCCAATGGGCGTTCTTTAATAACAGCCCCTCCTCAGTTAATAATAGCTTC
GGATGCTTCCAAGGAAGGCTGGGGAGCATTTTGCAAGGGTCAGGAAACAG
GGGGCCCGTGGTCATCTCGGGAGGCAGAAATGCATATCAATGTTCTGGAA
CTGAAAGCAGCAAAACTGGCGATTCGTTGCTTTCACAGGGAGTTCCCAAA
TATCCAGTCGATACATTTGCAAATGGACAACATCACAGCCCTAGCTTACT
TGAAAAAGATGGGGGGAACAAAGAGTCAAGCCTTAATAGATTTGAGCAAG
GAGATCTGGGATTATCTACTAGACCACCAGATCACGATTACTGTGGAGTA
CCTCCCTGGAGTTCTCAATGTGGAAGCAGACAGGCAATCTCGGAGTGTGA
AGGATTCAAGCGAATGGAAATTAGACCCTCACATATTCAAGAAAATATGT
CTGCTAAGAGGATCTCCGGACACAGACCTGTTTGCTTCCAGATTGTCTCA
CCAGGTTCCTCTATATTTTTCATGGAAGATAGACCCTTACAGCAGGGGGC
AGGACGCCTTCCAGGCGAGCTGGACACAAATAAGGGGGTATGCATTTCCT
CCATTTTGCCTCATCGGGAAAGTTTTAAAAAAGGTACTTTCAGACAGAGC
AACCATTCTGATAGTAACTCCTGCTTGGCAAACCCAGTCATGGTTTCCCC
AGCTCCTTCAGTTATCAATCCAAAACCCAATATTACTCCCGCAAAGGCGA
AATCTGTTGTCAAACCCAAAAGGGGAATGGCATCCACTTCTGCTGAATCA
AAGTCTCCAGTTAGTGGTCTGGACAGTTTCAGGGATAGAATCGAAGCAAC
AGGCATTTCTAAGAAAGCTTCCTCTCTCATCGCAGCTGCAAGAAGGGACG
GGACAGTCGCTCATTACCAATCGGCCTGGAGTAAGTGGAGTGGCTGGTGT
GATAAAAGGCAGATTGATCCTATTCGATCTCCTCTAAATTTTGTCATTGA
TTTCCTCTCTGACTGCTTCGATGAGGGCAAGGAGTTCAATACCATTGCTG
GTTACAGATCTGCTATCTCAGCTTATCATGACCCAATTGATGGGGTAAGG
GTTGGGAAACACCCTCTAGTTTCTTCATTGATGGCAGGGATTCACAACAA
AAGGTTTCCACAGCCCAGATACACTTTCATTTGGGATGTTGAGAAGGTCG
TGAGTTATCTTAGTACAATACCTTCACATTCTGAGAATGTGTCAGATAAA
CTGTTGACTTTGAAGCTGACTATGCTATTAGCCTTGACTTCAGCGGCCAG
GGCTCATGAGATTACATATTTAGATGAACGCTTCCTTGTTAAACATCATT
CAAAGTATACTTTTCACTTTGGGAAACCCACAAAAACTGCAAAAGTGGGT
AAACTTAGACCCCCAATAGAATTTCACCATTTTGAAAGTGATTTGAATCT
GTGTGTATGCCGCCACATTGATTTGTACTTGGAAAGAAGTGCTTCATGGA
GAAGGGAGAAAGGGCAATTATTATTGAGTTTCATTAATCCACATGGTCCG
GTTAAATCCTCAACTGTTTCTGGATGGGTCCTTGAGTGCTTGTCACAATC
TGGTGTAGATACTGCAACATTTAAAGGCCATTCTACTAGATCTGCCTCAA
CCTCTAAGGCCAGTTCTCTTGGAATTCCTCTAAAGGAAATTTTGAAAAGG
GGATATTGGGCCAATTCTACTGTGTTTGAACGGCATTATAAGAAGGAAAT
GTCTCAGGAAATCCCTAAGTTTGATGCCGCCGTTCTCGGGAAGCCGCTTT
GAACAGAGGTCTTGAGAGATGACTTTCAGACTCAAGGCCTGAAAGGGCGT
ATACCAGTATTAGATCGGGCGGAGATTTTATGCAATGAAATTGAGGATTG
TGCAAGGGCCCGAAGGGCCCGCAGTGCAATCCcgattttataaataaaat
cgAAGCCAACGATCTAATACTGCCCACCCTCCTTCCCCTACTAACACCTA
TCCTCATGATTATTTTCTTTCAGGACGATACTTTCGAGGAAGACGAGGAC
GTGGTGGTTATCGAGGAAACTGATTTTAGCATTTTATGATATAGAATATA
TGATATAGTCGGAAAAGACTTTGAGTTACATATTTGTGTCATTTCTTGTT
TTCACTAAGTTGCTTTGTTTGCGCAAAATTGGTGCTTTtaattatttcaa
tattttcgacCATTACACATTATTAAAACTGAAATAATAACTTTATAGTG
GTCTTGAGATTTGACTTTCAGACTCTCGGCGTGAAAGGGCGTATACCAGT
ATTAGATCGTTGGCTTcgattttatttata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00031973-exon-sc0000937-1491911889:7026..10455 | TCONS_00031973-exon-sc0000937-1491911889:7026..10455 | Clytia hemisphaerica | exon |
| TCONS_00031973-exon-sc0000937-1510915933:7026..10455 | TCONS_00031973-exon-sc0000937-1510915933:7026..10455 | Clytia hemisphaerica | exon |
| TCONS_00031973-exon-sc0000937-1575043694:7026..10455 | TCONS_00031973-exon-sc0000937-1575043694:7026..10455 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000937 | supercontig | sc0000937:7026..10455 + |
Blast
The following BLAST results are available for this feature:
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