TCONS_00030540 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00030540
Unique Name	TCONS_00030540
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	466

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000826:62779..67122+

transcript sequence

>TCONS_00030540 ID=TCONS_00030540|Name=TCONS_00030540|organism=Clytia hemisphaerica|type=transcript|length=466bp
atttcttcaaaacatcTATGATAAACATACTTCATATGTATTATCATGTT
TTGTTCTATATAAATTATTTGGATTGCTGTTTGATATGTTCAGATACTGT
TGGTAAATAATGGTGAATTTTTCAGAACATTTTTGGGGTGACAAACACAA
TGGGTTTGACGTGCTTCAACAGAACTTCAAATTGGGTCTCAATGCGAGCA
AAGAATTTGCAGACTTTTTGAAAGAAAGGAGTAACATAGAAGAAAGttat
tcaaaaagtttgttaaaacTAGCTCACAAGTGTGCAGCAGCAAATAACAA
TGTTGGAATATTTGAACCCTGTTGGAAGTTTCTTCAAAGCTCAACTGAAA
AGCTGGCCAATGTTCACAGTCAAGTTATACTACACTTAAACGATGTCAGC
AAAGCTGTTAGAGAATATGGGgaacaacaaaaagaaaaacaaaaacatAT
GAAAGATGATTTTTCT

Run BLAST on NCBI

transcript from alignment at sc0000826:62779..67122+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00030540 ID=TCONS_00030540|Name=TCONS_00030540|organism=Clytia hemisphaerica|type=transcript|length=4344bp|location=Sequence derived from alignment at sc0000826:62779..67122+ (Clytia hemisphaerica)
atttcttcaaaacatcTATGATAAACATACTTCATATGTATTATCATGTT
TTGTTCTATATAAATTATTTGGATTGCTGTTTGATATGTTCAGATACTGT
TGGTAAATAATGGTGAATTTTTCAGAACATTTTTGGGTGAGTATTAAGTT
GAGTGTTAGATTgaatatttaattttcttttcagttCGTTGGCTACTTTT
TTtacaatgtttttttaaatttaaagtatTTGTTCCAGCCAACTGCAGCT
CATCTAGAACTGTAATTGAATTAATTACTCGTGTACCTTTCCAAACATCT
TTCGACTATAGTCTGCGCACCAGCCGTTAGAATATTTGTCAGTTTTTCAT
GTCCTGTTATAGTCCATTTAGCCTAGGAGCTGTTAGCGGCACTAGCGAGA
CCTCAACGAATGAGGGAGTCTTTAAGATGCATATGAATTTGTTTCGTTTG
ATAGATAAGATACTATACTCTTTTTTCGAACTTTACTGTCTCACtattat
ttttaagaattgCTAAGTAAGCACCTGCATTATCACAAGTAGGTTGCatt
aaatttattgaaatttcttGTTCTTAGGGTGACAAACACAATGGGTTTGA
CGTGCTTCAACAGAACTTCAAATTGGGTCTCAATGCGAGCAAAGAATTTG
CAGACTTTTTGAAAGAAAGGTAAAATAGATATTCTTGTAAACTTTGTTCA
AATTGTGTGAGTATCTCAGGGCTTGAAATGACCGTCAGACATTGGAAATG
GTTCAGCATGGTTCCATAGAAATTGCTACAGGCAATAATCATAATTTTCA
TACAAAATTAATTAACCCTGATCAAACATTTTGTGTGACAGAAATTGTTA
TTTATGGCTTGAACAGCTACTTAAATTACTCCTTGCTTAGgttttctgaa
aaaagttttgttaaCTATTATTAAAATTTAATACTTGTCTATTACCGTCT
CTTTTCAGGAGTAACATAGAAGAAAGttattcaaaaagtttgttaaaacT
AGCTCACAAGTGTGCAGCAGCAAATAACAATGTTGGGTGAGTGTCACAAC
ATTATCAATTTCAAGTGTTTGATTCTAACTAATTTAAAGTTTTTGTATGT
GCTGATTTATTTACTACTATTTGATAAAATTATGGAATTTGGATAACCCA
CTCCGACAGCtaatttgctaatttttttgattttttttacaatgaACTTT
TCATAATACAGAATAGAATGATGAgggatattttatatttttattttttc
tcagatttctcaaattttccacACTTTTTTCAGAATAGAATCACATtttg
attctatttatttcactttattatattatttcaaggtattagGAATagaa
aattgctttgagttGCAATCACAATCCTATTAATATACTAATCTGTACTA
ATACCAACTTTCTTTTGAACAGAATATTTGAACCCTGTTGGAAGTTTCTT
CAAAGCTCAACTGAAAAGCTGGCCAATGTTCACAGTCAAGTTATACTACA
CTTAAACGATGTCAGCAAAGCTGTTAGAGAATATGGGgaacaacaaaaag
aaaaacaaaaacatgtaATTATTCAGTTCTCTGTCGCAGCAAAGTAAATA
AAGAGACTTTTTCTGTCGCAATTTTCTCTATGAAGCTGCAGTTTCACACG
ATTTAGTTAATGAAAGTGTGTAATTGTTATCAGTANTTGACCACAGATTA
TTATGATAATTATTGTAGTTTTGTTCCATTCACACTCTATGAAGCTGCAG
TTTCACACGATTTAGTTAGTGAAAGTGTGTAATTGTTAACACCATTATCT
TTCAGCccatttcaaattaaaaatatatattcaacAATATATTCAACACT
AAAAGCCTTGAAGCCATGTGACCAATTATCAGTaatgaaggcttcaaaat
tctTCAGCCTTTCAGCTGCAGATTCTGATACTCTGACAGATATATGTTGA
AAATTCGAGGAacttgaatttgaaatgttggtgaaatttttgcttttttg
agtTTCTTATTTTCTCTTATGTTTTAACCATAGATGAAAGATGATTTTTC
TTCAACAAACGAGGCTGTCCAAAATCTACAACAACTAAGTGTTGCACTAT
TAAAGGTGAGGAATCATGCAGATTTGTATGAAAACAAACGGCATAACCAA
AAAATAATCATCTCTTTGGATTTCAAGTAAAAATAACCATGAAATAAATT
TGTGCATGACTTGATTTTCCAACATTATGTTTGTTGCTGTAGATCCTAAA
TAGGTGTGCCATTTTGACTTatgttatacacgttttttttttattagaac
acctaaaatttggctgagcctggatgtgcttattttttttagaaattttc
agcctaaaatgttcttaaatgtgttcttaatttttcagactactctaaat
cgataatatcatgcaaaataaagagcacgtaaaattggtaaaatttggac
aatatttgattttagaaaattcatcactaagttcagttaaaactgcttga
aaagaggaaacaattgtagtttcttgtcatttttttccaaactgaggctg
ggcatgttcttaagatgttcttaatttttcgacgaagtTCAGACTCaacg
ttcttataaactgggttctaataaaaaaaaacgtgtatacctTATTGTGG
TAGTGTCATTTCTAAATTAGGATGGCTCTTTGGCATCTAAAAATATCTAT
TAAAGCCTTTTCTTATCCTAAAATTAGACCAGACCTCTACCATTCTCATG
CCTAAATATTTTTAATCACTTTCCAGACAAAAGAAGCCTATCACCAGCGT
TCACAAGAGGTTGAAAAGTATCGGAAAGAAATGACCAATCTAAAAGATAT
CAAAACCGTAATAACATTTTCAGATTAATGAATAAGGAACTTCTGTAGCT
TTCATCCATATATTTTGTTGCNGAACATTTTCAGATTAATGAATACGGAA
CTTCTGTAGCTTTCATCCATATATTTTGTTGCTGGACTGTAGATTTTCCt
agaatttttcgaaatttgtgtTTTGCCCTTTATAGTTTTGTACTTCGAGG
TAATTTGATTTTGGACATTATGAGCTTtcacttttcaattttattatctt
tattttcgccatatcaattttttttatggtattttgtgttttttttgtag
GCGGAAACTAAATACAAAAAGTCAAGTAAGTTgggttattttaaattttt
atttgtttggtAATTAGGCTTTTAAAGATGAATAATCAGGTCGCCCTGTC
CAGTAGGGAtctaaatgataaaaaataagtACNTATTTGTTTGGTAATTA
GGCTATTGAACTTGAATAATCAGGTCGCCCTGTCCAGTAGGGATcgaaat
gataaaaatgataaataccTATATTTTGTTTGGTAGACTATTATCACAAG
GACAATATGTTATAAAGTTTCATTTCAACGTGTTTATGAATTTGGTATTT
TGTTTTCCAGCTGAGGAATATAAACAAATGGTGGAGAGAAGAGAGATTGC
TCGGAAAGAGTTCCAAGAGAAAATAACTGAAATGTCACAGGTAAAAACAC
AAGAATCTCTTTACTTGACCTGTAACTTATAGTTTTCCCCCCGAATGTTA
TTCAAAAAGAATACTCCTAAAGGTATACATATATTTTGTTAATGTAAACA
ATTCATGCTTTGACCTTGTTTGAGGGAAGACAGTATCTGAGTATTatatg
aaatcttttataataaTCACAACATCATTATGtgaaaatttttctcagaa
acTTCAAACTGTTGAAGAGTCCCACCTGAAGCAGATGTTAGAGTTATTGT
CGAAATATGGAGAATCTATCAAAGTTGAAAGATTTCTTCTGGAACAAGTA
AGTTGATGCCATTGGGATTTATTTGACTTCTCACTTGAACAGAGGAAGAT
CAAAACTCGATACTAATTCACTCAATACTATTGGACTTTCTTCGACTCAA
CTGCTAGTTGAAAAAACCTCAGAATCGTAGTCAGCTACTTAAAAGTTGGT
TCCAAACGGTAAAGATTGGGCACAAAAATTCATAGATATtggtttttgat
taaaaaacaacaaaaaagtttaaatgagAACCACAAATAGATTATTAGGT
CTAAAGTTGCTGCTACTTTTGGTTGGCTACTTTACCTAAAAAAAAAGGCC
CGAACCTTAAGGAACCTAAGAATAGTCacattttattacattttaaaacC
ATAGATCATTGATGAATTTGGACGGAACATGGTAGCACTCACAGTTGACA
AACTATTACAACAGTTCATCAATTTAAAACAAACTGGAAAAGATGTACCA
GGTATGCCAGTGTTCTTATACCGTAGATGAAAGATGATTTTTCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_017508	XLOC_017508	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000826	supercontig	sc0000826:62779..67122 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.55444	0	5.56229	1.12656	1.41012e-07	0	1.76616	2.40591e-06	1.45035e-05	2.38661	2.27865	0	0	2.35318	0	0	0	0	1.56861	0.00047596	0.337667	0

Blast

[Close]

BLAST of TCONS_00030540 vs. Swiss-Prot (Human)
Match: FCHO2 (F-BAR domain only protein 2 OS=Homo sapiens GN=FCHO2 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.213e-29
Identity = 54/120 (45.00%), Postives = 83/120 (69.17%), Query Frame = 2

Query:  107 IMVNFSEHFWGDKHNGFDVLQQNFKLGLNASKEFADFLKERSNIEESYSKSLLKLAHKCAAANNNVGIFEPCWKFLQSSTEKLANVHSQVILHLNDVSKAVREYGEQQKEKQKHMKDDFS 466
            +M  F E+FWG+K++GFDVL  N K G  ++KE ADF++ER+ IEE+YS+S+ KLA K A+  + +G F P W   ++STEKLAN H  ++  L ++ K V++YGE+Q +  K  K++ +
Sbjct:    2 VMAYFVENFWGEKNSGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLA-KSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVA 120

The following BLAST results are available for this feature:

BLAST of TCONS_00030540 vs. Swiss-Prot (Human)

BLAST of TCONS_00030540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FCHO2	5.213e-29	45.00	F-BAR domain only protein 2 OS=Homo sapiens GN=FCH...	[more]

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TCONS_00030540 (transcript) - C. hemisphaerica