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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030538 ID=TCONS_00030538|Name=TCONS_00030538|organism=Clytia hemisphaerica|type=transcript|length=1163bpRun BLAST on NCBI protein sequence of TCONS_00030538-protein >TCONS_00030538-protein ID=TCONS_00030538-protein|Name=TCONS_00030538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp PKKHSAYQLENNRSHSEDIKDGEINEENESESNDNDIFSTKTQTDGGGFSRun BLAST on NCBI transcript from alignment at sc0000826:53379..68313+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00030538 ID=TCONS_00030538|Name=TCONS_00030538|organism=Clytia hemisphaerica|type=transcript|length=14935bp|location=Sequence derived from alignment at sc0000826:53379..68313+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000826:53379..68313+ >TCONS_00030538 ID=TCONS_00030538|Name=TCONS_00030538|organism=Clytia hemisphaerica|type=CDS|length=13140bp|location=Sequence derived from alignment at sc0000826:53379..68313+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00030538 vs. Swiss-Prot (Human)
Match: FCHO2 (F-BAR domain only protein 2 OS=Homo sapiens GN=FCHO2 PE=1 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 2.191e-52 Identity = 109/262 (41.60%), Postives = 171/262 (65.27%), Query Frame = 2
Query: 158 GDKHNGFDVLQQNFKLGLNASKEFADFLKERSNIEESYSKSLLKLAHKCAAANNNVGIFEPCWKFLQSSTEKLANVHSQVILHLNDVSKAVREYGEQQKEKQKHMKDDFSSTNEAVQNLQQLSVALLKTKEAYHQRSQEVEKYRKEMTNLKDIXXXXXXXXXXXXXXXQMVERREIARKEFQEKITEMSQKLQTVEESHLKQMLELLSKYGESIKVERFLLEQIIDEFGRNMVALTVDKLLQQFINLKQTGKDVPAQIDFEE 943
G+K++GFDVL N K G ++KE ADF++ER+ IEE+YS+S+ KLA K A+ + +G F P W ++STEKLAN H ++ L ++ K V++YGE+Q + K K++ + T EAVQ +Q ++ AL K+KE Y+ + E E+ +KE ++I+ A K KK+T+ YK VE+ +A+ +F++K+TE +QK Q +EE+HL + E++ +IK + Q+ +EF NM TV+ L+Q+F K TGK+ P I+FEE
Sbjct: 12 GEKNSGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLA-KSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANTTVESLIQKFAESKGTGKERPGLIEFEE 272 The following BLAST results are available for this feature:
BLAST of TCONS_00030538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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