TCONS_00030250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00030250
Unique NameTCONS_00030250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00030250 ID=TCONS_00030250|Name=TCONS_00030250|organism=Clytia hemisphaerica|type=transcript|length=1084bp
CAGCTGAGTTGAATGTATTGGATTAAATACTTGGACAACCTAATTATTCA
AACTCATtctcaataaaataaaattttaggtgtttactgtaattagaaaa
aataagatttgatcAGAATCTTAACGATGGAAGCAATATCAGAATTCTAC
AAATGGGCTGAATCGATCAGTGATCCAAGAGTTGCAGATTGGTTTCTTAT
ACCCAGTCCTCTCCCAACTTATTCGATGTCTTTTTTCTACATAATATTTT
CATGGAAAATTGGTCCATATCTTATGCACAACAGAGAACCcttcaatttg
aaatatttgctgatCATTTATAATTTATCAATGGTTTACTTGAATTACCA
TATTTTCAAGGAGCTCTTATTTGGAATGCTGGAAGCTGGTTATTCATACC
CATGTCAACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGATTGCC
AGAGCTCTGTGGTGGTACTTTgcatcgaagttgatcgaatttattgacac
tTTGTTTTTCATCTTGCGCAAGAAGGATAATCAGATTTCATTTTTGCACG
TTTATCATCATGCCACTATGCCCATGTTGTGGTGGATTGGCACCAAATGG
GTTCCTGCTGGACACTGCACCCGCTGCCATCATGAACGCATTCATCCATA
TTATCATGTATTTTTATTACGGGATGGCTGCTTTCGGTCCTTCGCTTCAA
AAATACCTCTGGTGGAAGAGATACCTTACACAAATGCAACTGATTCAATT
TTGTATAGCATTGGGAACGGCAACGTATTCTTTGTACAGTGGCTGTGATT
TCCCACGTTGGATGAGCTGGGCGTTGATCCTCTATATGAtctcttttctc
gttttgtTCGGTAACTTTTACATTCAAGCATActtaacaaaaaagaaaaa
gaaaaatgacgaACTCAGAAATGGCAAAATGAAGACTTCTGTTAAAGGAA
CGAGTAGAGACAATAATGGGGAATTAAGATCTAGGAACAAAATCTCATCC
TAATTTATAATTATATTTAcagttcgagttatagagtaaggtttataagg
cattgatAACTGAAGGGAcgggaaaactttttcg
Run BLAST on NCBI

transcript from alignment at sc0000803:66221..68874-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00030250 ID=TCONS_00030250|Name=TCONS_00030250|organism=Clytia hemisphaerica|type=transcript|length=2654bp|location=Sequence derived from alignment at sc0000803:66221..68874- (Clytia hemisphaerica)
CAGCTGAGTTGAATGTATTGGATTAAATACTTGGACAACCTAATTATTCA
AACTCATTCTCAATAAAATAAAATTTTAGGTGTTTACTGTAATTAGAAAA
AATAAGATTTGATCAGAATCTTAACGATGGAAGCAATATCAGAATTCTAC
AAATGGGCTGAATCGATCAGTGGTAAGTTCAGGGAAAGATAACGGTGTTA
ATAATAATAGTATAGAGACATTATTTCTTTAAATCTATCAATAACTTATT
TTTGTTCCAAAGCTTTAATCAGGGTAAATTTAAATACCATAACTTCGTGT
AATGCTGACATACCTTGACATACCTTGTCTAATTCAGTCATAGCAACTTT
TTAGTCTTTAAAATGTTTATCAATAAAACCTTCTAAATAAGCTGTTCAAA
AAAAATCAGTCTAACTACTTGTAACTACTTTGCAGACCAGATAGTTGCTA
TGGCGAAATTATTTATACTGTTTTCTTTATGATTTCTTTTAGATCCAAGA
GTTGCAGATTGGTTTCTTATACCCAGTCCTCTCCCAACTTATTCGATGTC
TTTTTTCTACATAATATTTTCATGGAAAATTGGTCCATATCTTATGCACA
ACAGAGAACCCTTCAATTTGAAATATTTGCTGATCATTTATAATTTATCA
ATGGTTTACTTGAATTACCATATTTTCAAGGAGGTTGGTACTATGTGTTC
ACAAATTGAAAATCAACATAGTATATACCTATCCTCATAAGAATCATTTA
CAACTAAGAGTAACACTTTATTATGACTGTAGAATCCTCACTCTTTGATC
ATCAAAAGTAGTTTTTTTCAAATGCATCCATTCGGAATTATTAAAATGTT
AGCTAAAGTTTTTAGGAAAAGTGCTGAAAAGTGTTAAAATCATGATATTG
AAATTTCTATTTAAAAGCTCTTATTTGGAATGCTGGAAGCTGGTTATTCA
TACCCATGTCAACCCTTCCTAACTTCTACAAGACCTGTCGATTTCAGGGT
AAATCTTGTTAAAATTTTGTTTGTGAAATGAATCTGGAATGAACCGTTTG
CTTGATCTGCTCTTTTGAAAAATTTATGCTTCTGCCAAGATTTTGACATG
TCAGCATTTATAAATTGCATTATATAAAGCTTTTGTTGAACTTTCAATTA
TATGTTTTAAAATAAGAGCCACAATTTATTGATCATTTCTAAACGGAATA
GACACAGAGATGTGAATTGGGAATTATGTTATATCCACCTTCTTAGCTTT
TATCATAAATTGGGATCAATTTTAGATTCATTAAAAATTACTGGCACTTG
CATTCAACTTTATCACGGTAGTGTCTATTGGTTATCGGTTAATTTTTCTG
TTTATTTATAAATTCAACAGATTGCCAGAGCTCTGTGGTGGTACTTTGCA
TCGAAGTTGATCGAATTTATTGACACTGTAAGTTAAATGATTTCTTCATT
CGTGTTAAGATAAGGGTCACTTCATGAGCAGTTTTATCTGAATGAAGAAT
TACAATTTTTCGAGTCTAACATTTACAGTTGCCTAGTAAAATTCTTTCAC
TAAGATACTATTTCTAAAATGAAAATGCGGATTGTGTGAGTCTTTCTTTG
AGTCGAATTTCTAAGCTATCATGCATTTACCATCTTCCTTTTCCTTTACA
GTTGTTTTTCATCTTGCGCAAGAAGGATAATCAGATTTCATTTTTGCACG
TTTATCATCATGCCACTATGCCCATGTTGTGGTGGATTGGCACCAAATGG
GTTCCTGCTGGACAGTGTGAGTACATTATTTTCAGTTTTATCGCTTCTCG
AACTTCTACAAATTCGAAAACGCACGTTCTATATGAACTAGGGGTAGTGA
GCAATAGATTTTTGAGATTTTCCGTGCCACTTTTTATTTCAAACTGAAAC
ATTGCATTAATCTCTTTATATTTCTTCATATATAAGATTAAGTCGTTGGC
TGTACAGCCAAACTTCCTTACGAATAAAACACTTTTCGATTTTAGCTGCA
CCCGCTGCCATCATGAACGCATTCATCCATATTATCATGTATTTTTATTA
CGGGATGGCTGCTTTCGGTCCTTCGCTTCAAAAATACCTCTGGTGGAAGA
GATACCTTACACAAATGCAACTGGTAGGTTACTATAGTATCTCTACGTAG
GTTAGCCCTTGGTCTGCCTGCTTTGATTAAGATTATCAGTTTTGAGTAGT
CCAGTACTCGTTGCGATTCTATTCATATCTGGAATGGTGATATTAAAAAA
GTCAATTTCTTGAAGAACTGTGCTAAGGATCGTGAATAAGAGAATTTCTT
TTTCATTTCCAGATTCAATTTTGTATAGCATTGGGAACGGCAACGTATTC
TTTGTACAGTGGCTGTGATTTCCCACGTTGGATGAGCTGGGCGTTGATCC
TCTATATGATCTCTTTTCTCGTTTTGTTCGGTAACTTTTACATTCAAGCA
TACTTAACAAAAAAGAAAAAGAAAAATGACGAACTCAGAAATGGCAAAAT
GAAGACTTCTGTTAAAGGAACGAGTAGAGACAATAATGGGGAATTAAGAT
CTAGGAACAAAATCTCATCCTAATTTATAATTATATTTACAGTTCGAGTT
ATAGAGTAAGGTTTATAAGGCATTGATAACTGAAGGGACGGGAAAACTTT
TTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017316XLOC_017316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00030250-exon-sc0000803-1575043694:68703..68874TCONS_00030250-exon-sc0000803-1575043694:68703..68874Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1575043694:68192..68382TCONS_00030250-exon-sc0000803-1575043694:68192..68382Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1575043694:67877..67957TCONS_00030250-exon-sc0000803-1575043694:67877..67957Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1575043694:67448..67504TCONS_00030250-exon-sc0000803-1575043694:67448..67504Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1575043694:67111..67223TCONS_00030250-exon-sc0000803-1575043694:67111..67223Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1575043694:66752..66879TCONS_00030250-exon-sc0000803-1575043694:66752..66879Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1575043694:66221..66562TCONS_00030250-exon-sc0000803-1575043694:66221..66562Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1510915933:68703..68874TCONS_00030250-exon-sc0000803-1510915933:68703..68874Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1510915933:68192..68382TCONS_00030250-exon-sc0000803-1510915933:68192..68382Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1510915933:67877..67957TCONS_00030250-exon-sc0000803-1510915933:67877..67957Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1510915933:67448..67504TCONS_00030250-exon-sc0000803-1510915933:67448..67504Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1510915933:67111..67223TCONS_00030250-exon-sc0000803-1510915933:67111..67223Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1510915933:66752..66879TCONS_00030250-exon-sc0000803-1510915933:66752..66879Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1510915933:66221..66562TCONS_00030250-exon-sc0000803-1510915933:66221..66562Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1491911889:68703..68874TCONS_00030250-exon-sc0000803-1491911889:68703..68874Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1491911889:68192..68382TCONS_00030250-exon-sc0000803-1491911889:68192..68382Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1491911889:67877..67957TCONS_00030250-exon-sc0000803-1491911889:67877..67957Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1491911889:67448..67504TCONS_00030250-exon-sc0000803-1491911889:67448..67504Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1491911889:67111..67223TCONS_00030250-exon-sc0000803-1491911889:67111..67223Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1491911889:66752..66879TCONS_00030250-exon-sc0000803-1491911889:66752..66879Clytia hemisphaericaexon
TCONS_00030250-exon-sc0000803-1491911889:66221..66562TCONS_00030250-exon-sc0000803-1491911889:66221..66562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000803supercontigsc0000803:66221..68874 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.529626	0.575991	1.9342	2.7159	0.243403	0.238022	1.48934	1.23712	0	1.10607	0	0.273619	1.03978	1.08721	0.884917	0	0.685697	1.7726	0	0.540643	0.587116	1.48527	0.824437	1.4606	0.181636	0	0.319755	0	7.55377	3.1513
Blast
[Close]
BLAST of TCONS_00030250 vs. Swiss-Prot (Human)
Match: ELOV4 (Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.980e-80
Identity = 91/159 (57.23%), Postives = 111/159 (69.81%), Query Frame = 1 
Query:  142 EFYKWAESISDPRVADWFLIPSPLPTYSMSFFYIIFSWKIGPYLMHNREPFNLKYLLIIYNLSMVYLNYHIFKELLFGMLEAGYSYPCQPFLTSTRPVDFRIARALWWYFASKLIEFIDTLFFILRKKDNQISFLHVYHHATMPMLWWIGTKWVPAGHC 618
            EFY+W  SI+D RV +W L+ SP PT S+S  Y++F W +GP  M +REPF ++ +LIIYN  MV LN  IF+EL  G   AGYSY CQ    S    + RIA ALWWYF SK +E++DT+FFILRKK+NQ+SFLHVYHH TM  LWWIG KWV  G  
Sbjct:   24 EFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVW-LGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQA 181

HSP 2 Score: 128.257 bits (321), Expect = 5.980e-80
Identity = 65/124 (52.42%), Postives = 82/124 (66.13%), Query Frame = 2 
Query:  623 AAIMNAFIHIIMYFYYGMAAFGPSLQKYLWWKRYLTQMQLIQFCIALGTATYSLYSGCDFPRWMSWALILYMISFLVLFGNFYIQAYLTKKKKKNDELRNGKMKTSVKGTSRDNNGELRSRNKI 994
             A +N+FIH+IMY YYG+ AFGP +QKYLWWKRYLT +QLIQF + +G    SLY+ C FP+WM WALI Y ISF+ LF NFYI+ Y   KK K         KT++ G S   NG  +S  ++
Sbjct:  184 GAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAG-------KTAMNGISA--NGVSKSEKQL 298
The following BLAST results are available for this feature:
BLAST of TCONS_00030250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOV45.980e-8057.23Elongation of very long chain fatty acids protein ... [more]
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