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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030245 ID=TCONS_00030245|Name=TCONS_00030245|organism=Clytia hemisphaerica|type=transcript|length=308bp
GATTATCATAGCTAAAAATGTGAaatcaaaatatcataaaaattcagaat
tccaaaaAAGTTGGGCTAAAAGTATGGCACATTTCACAACGGTTTATCAT
GGAGATATCTTACCAAATGGTATGGTTCCATTGCATACATCACAAGGACA
AGAATTGCTTCagaaaacaacaaagaaaaataaaattgttgtgAATGATT
TTAAACCTCAAATTGGCGACACTAACTGTGGCCCAACCTCTCTAGCATTG
GTTTTAAATGCGATCAATAGTTTTCATGTTAAACTTTCAGATCCTGATTT
AACGGACA Run BLAST on NCBI protein sequence of TCONS_00030245-protein >TCONS_00030245-protein ID=TCONS_00030245-protein|Name=TCONS_00030245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
IIIAKNVKSKYHKNSEFQKSWAKSMAHFTTVYHGDILPNGMVPLHTSQGQ
ELLQKTTKKNKIVVNDFKPQIGDTNCGPTSLALVLNAINSFHVKLSDPDL
TD Run BLAST on NCBI transcript from alignment at sc0000803:61220..62959+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030245 ID=TCONS_00030245|Name=TCONS_00030245|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000803:61220..62959+ (Clytia hemisphaerica)
GATTATCATAGCTAAAAATGTGAaatcaaaatatcataaaaattcagaat
tccaaaaAAGTTGGGCTAAAAGTGAGTatctttgaaagaatttttgtttG
TTGCCATTTTTCTATCTGTAGTGTGCCAGACACCAGAGGtgacaaatttg
aaatataTAGACATAGGATAAAGTTCAAAGTTCAAAGAGGGGGTTAATCT
AAAGAAtccagtttgcagagtgtggCACGTTTGCTCGATATCTCGAGTGC
ACAACTCAGAAAAAGTCGAGTGCAGGTGTAAAATTTGAGGCTTTAAGCTT
TTTTCCCATACGCatgtaaaattttactttagaccttaaggaaaatcgtt
cgtaaggctgtcttttgaGAATTTCCCCAACATTATGAcgtagagttttt
gttgattaagagggtcttacgtgactttttcttccgttcaaaactttttg
aacgtaagcaaactctacatactgacataaggccttaaaacactacgtaa
gcttagggaaatagaccttttttcaaagaggacgtcctgttgaataatta
tgtagtccagccataaaaacaataatagagccatgcataattactgtatc
atgcatNtattgtaataattatgcgtggttttatcattgtttttctgctg
gactacataattattcaacagggtgacctctttgaaaaaaggtctattcc
ccACTCTTCAAGGTCTtaggtaaaattttacttacatgtgaaaaaagctt
taagatGCAAGTGCAGACGGTTTTTTAACCCTAAGTGCAGAGTTCCACTA
TTTTCTCCTCAAGCGCAGctaattttagtaattttttgcCTTTTGGGCCA
ACTTTTAAGGTATAGGTGCACCTTGTTGGGACCAAAGTTTATCAGTTGCG
CTCTTGCAGTGCGGAAttggtatttccaaattttccaataattgactgaa
aataccgaaataccaaCATGAATAAGGGTCTTTTACCAATTAATTTTTCC
CCTAATACAATTACACTGATCGTAAATAAGGCCAATGCCGCCAATGGACC
AATATCCTGtaagtcccccccccctaaTATGCCAAATGTTTTGAACTCCa
tccaaatgaaaataaaaacacagcattgatttttttaaacctcTATCAAA
AACTGAATATAGGCTGTATGAATTTTTCAGGAATTGATTCTTACTCTCAC
tctttgtcatttttaaatttttcaaaattttttacatCGATATCTCCCAA
CTTCCCAATGGGCACAAGTTTGCAATCAAATTTTANCAAAATGTTTTACA
TTGATATCTCCAATGGGCACAAGTTTGCAATCAAGTTTTAACATTATCAA
GAATTATCCCCATTTGCAATAATTACTTGAAAAGggcttcaaatttttat
tttgatttaatatTGGATaagtgatattattgttctgaAAGTCTAATTAA
GTATACATTTTTCTGGAATGCAATATagctgtttgattttttttatctca
aaGGTATGGCACATTTCACAACGGTTTATCATGGAGATATCTTACCAAAT
GGTATGGTTCCATTGCATACATCACAAGGACAAGAATTGCTTCagaaaac
aacaaagaaaaataaaattgttgtgAATGATTTTAAACCTCAAATTGGCG
ACACTAACTGTGGCCCAACCTCTCTAGCATTGGTTTTAAATGCGATCAAT
AGTTTTCATGTTAAACTTTCAGATCCTGATTTAACGGACA Coding sequence (CDS) from alignment at sc0000803:61220..62959+ >TCONS_00030245 ID=TCONS_00030245|Name=TCONS_00030245|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000803:61220..62959+ (Clytia hemisphaerica)
ATTATCATAGCTAAAAATGTGAaatcaaaatatcataaaaattcagaatt
ccaaaaAAGTTGGGCTAAAAGTATGGCACATTTCACAACGGTTTATCATG
GAGATATCTTACCAAATGGTATGGTTCCATTGCATACATCACAAGGACAA
GAATTGCTTCagaaaacaacaaagaaaaataaaattgttgtgAATGATTT
TAAACCTCAAATTGGCGACACTAACTGTGGCCCAACCTCTCTAGCATTGG
TTTTAAATGCGATCAATAGTTTTCATGTTAAACTTTCAGATCCTGATTTA
ACGGACATTATCATAGCTAAAAATGTGAaatcaaaatatcataaaaattc
agaattccaaaaAAGTTGGGCTAAAAGTATGGCACATTTCACAACGGTTT
ATCATGGAGATATCTTACCAAATGGTATGGTTCCATTGCATACATCACAA
GGACAAGAATTGCTTCagaaaacaacaaagaaaaataaaattgttgtgAA
TGATTTTAAACCTCAAATTGGCGACACTAACTGTGGCCCAACCTCTCTAG
CATTGGTTTTAAATGCGATCAATAGTTTTCATGTTAAACTTTCAGATCCT
GATTTAACGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00030245-exon-sc0000803-1491911889:61220..61290 | TCONS_00030245-exon-sc0000803-1491911889:61220..61290 | Clytia hemisphaerica | exon |
| TCONS_00030245-exon-sc0000803-1510915933:61220..61290 | TCONS_00030245-exon-sc0000803-1510915933:61220..61290 | Clytia hemisphaerica | exon |
| TCONS_00030245-exon-sc0000803-1575043694:61220..61290 | TCONS_00030245-exon-sc0000803-1575043694:61220..61290 | Clytia hemisphaerica | exon |
| TCONS_00030245-exon-sc0000803-1491911889:62723..62959 | TCONS_00030245-exon-sc0000803-1491911889:62723..62959 | Clytia hemisphaerica | exon |
| TCONS_00030245-exon-sc0000803-1510915933:62723..62959 | TCONS_00030245-exon-sc0000803-1510915933:62723..62959 | Clytia hemisphaerica | exon |
| TCONS_00030245-exon-sc0000803-1575043694:62723..62959 | TCONS_00030245-exon-sc0000803-1575043694:62723..62959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000803 | supercontig | sc0000803:61220..62959 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007719 | Phytochelatin_synthase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0016756 | glutathione gamma-glutamylcysteinyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0010038 | response to metal ion |
| GO:0046938 | phytochelatin biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0046938 |
phytochelatin biosynthetic process |
| biological_process |
GO:0010038 |
response to metal ion |
| molecular_function |
GO:0016756 |
glutathione gamma-glutamylcysteinyltransferase activity |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
The following BLAST results are available for this feature:
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