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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00030162 ID=TCONS_00030162|Name=TCONS_00030162|organism=Clytia hemisphaerica|type=transcript|length=906bp GCGTTCTTGATGCCAGCCATACTAACAACAATAAATTTTATGTTGTCGAG AATTGGAGCACGGGTTCAAGTGCGTGATGGATTCGTATTGAATTTGAATA CATATTGGCTATTCGTAGGCCAACCCACCACTGGAAAATCTTCGGCAATA AAACATGGAATAACCGATCCCATTCCCGATTCGATCAAGGATTCCCTAAT TTCGTCTACTACAAGCAGTGGCTTGACGAAatttctttcgaaaaagtcaG AAGCTTGCATTGTGGACTCGGAGATCTCAGAATATATTTCGCGCTTTGCA AAGAATGATGAAAATAACACAGGAGAAATCGAGAACATATGTAAGATATA TAGCGGAGAAACAATCAACATAAACTATGCGACGGAGAATCAGAGACACT TGAAAGGCAATATTCCGTTTTGTATTTTGGGATCAACACaattgaaaaac atttcaatGCTACTTGCTACTATAGACAGGAATGATGGATTCTGGGAGAG ATTTTTAGTTACAGTTCCAACTCCCTACCGTCCTAGTCCAGAGGAACAAG TTTCTGCTAATCGCAATTTTGGCCAAGAATTCAACTTCGACATGAATGAT TTTTATTCAAAACTGCAAGAGATATTGGATCCAGAAAATCCTCCAATCTT TTATCTTGGTGCGAGTGCTGCTGAATTTCTCAATAAATTGGAAACAGAAT TCATTCACGACTCGAATTCGAAAATGAGGATGGCCATACCCGTGAAATCT TCTAAATTGGCCGATACCATTCCAAAGATAGCAGTGGCGCTACACACTAT GGAAAAGGTTTTCGCTATTTTATGTGATAATTCTGCCATTGGTTTGGACG AAGAAGTCTCACTCGAAATGGTGATACAAGCCAGAAATATCATAAACAAT TCAGAG Run BLAST on NCBI protein sequence of TCONS_00030162-protein >TCONS_00030162-protein ID=TCONS_00030162-protein|Name=TCONS_00030162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
AFLMPAILTTINFMLSRIGARVQVRDGFVLNLNTYWLFVGQPTTGKSSAI KHGITDPIPDSIKDSLISSTTSSGLTKFLSKKSEACIVDSEISEYISRFA KNDENNTGEIENICKIYSGETININYATENQRHLKGNIPFCILGSTQLKN ISMLLATIDRNDGFWERFLVTVPTPYRPSPEEQVSANRNFGQEFNFDMND FYSKLQEILDPENPPIFYLGASAAEFLNKLETEFIHDSNSKMRMAIPVKS SKLADTIPKIAVALHTMEKVFAILCDNSAIGLDEEVSLEMVIQARNIINN SE Run BLAST on NCBI transcript from alignment at sc0000796:143343..146603- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00030162 ID=TCONS_00030162|Name=TCONS_00030162|organism=Clytia hemisphaerica|type=transcript|length=3261bp|location=Sequence derived from alignment at sc0000796:143343..146603- (Clytia hemisphaerica) GCGTTCTTGATGCCAGCCATACTAACAACAATAAATTTTATGTTGTCGAG
AATTGGAGCACGGGTTCAAGTGCGTGATGGATTCGTATTGAATTTGAATA
CATATTGGCTATTCGTAGGCCAACCCACCACTGGTAAGTTTAATCATTTG
CTTTATTCACCTTCTCTCGGGTAACTGAATAGAAGTCCCCCCTTATTAGT
TTTCCAAATTTTTCCAACCAGGACACCGCAAACATTTTAATCTTACCCTG
CGCTTATTTAGTTTAGAGATTTTTTCCAACCCCCACTCTATTGCATCCCT
GGCTATTAGGTACGCGATAGTATCATATTTCTTAATCGGCAATATCGGAC
GCACGAATTTTTTTTTTTTTTTTTTTTTTTTTTGTATTGTTTTCTTTGAT
AGACTTTATGAGCTATGAAATATTTACAAGGACTGTGAACAAAAATATCC
TTTAAGAGGATTTCTAAAGCCATTCACAGTATAAACTAGCTACAGTTATA
AATAATGATGATATAATATATTATCTACGTTATCTTTTTTAGCTAGGTGA
TTTTGCAAATAGAATACAGCCTTTATGTATAAGTACGTCCAAGTTATAAA
AACGCAGGAGAAAAAGAAGAAGAAGAAGAAGAAGAAAAAAAATATATATA
TTTAAATCTAAACTAAGTTTTAGTAATTATGAAAGGCAAGAAGACATATT
TCAGTCATTATTGCTTTTTAGAGAATCTTTGAGTTTCAATGAAAAAGCAG
AGCATAAAATAAGAGAGAATAAGCAGAGAATAAAAAGAGTGCGGGGAAAC
GTCGCCTTCAGAGAGTAGTGAAACCCCACGGTGTAAGTTTTTTTAAATCA
TTTTTAGTACCACATGTTTGGTTGTTGAATTCTTTCGACCGCCCCGGTTG
AACATATTCTTTACTGGAAAGAGAAGTGAAGAGATCATATTTTTATGTAA
ATATATCCTGACTTCAGCCAATTTTTATGTGCAATTTTATTTCACCTACA
GGAAAATCTTCGGCAATAAAACATGGAATAACCGATCCCATTCCCGATTC
GATCAAGGATTCCCTAATTTCGTCTACTACAAGCAGTGGCTTGACGAAAT
TTCTTTCGAAAAAGTCAGAAGCTTGCATTGTGGACTCGGAGATCTCAGAA
TATATTTCGCGCTTTGCAAAGAATGATGAAAATAACACAGGTAAATTCTT
TGATTATTCATTACAGAGGTTTGATTTAAGCAATCATTATTCTACTGTAC
ATAATAATAGGTGTTTTGTACTTTTACGTCGTGAAGAGTTTGCTCCTTTT
TAGTAAGGGAAAAGGGTGACGGTTACTGTACATAATAATAGGTGTTTTGT
ACTTTTACGGTATTTATCCTTATTATTTGTCATTATGCCGGTACTTTAAC
CTCTACAAACTGGTGGTGACGGTGTTATTATTTTTTTCAATTTTTGGGAT
TCTGGGATTCAGCAACAATTTTGACGGGAAAACAGTATTTCAAACCCCTA
TAAACCCCCTATAAGTCTCTGACTCAAAATCTAAATGTTCCCTTTATACA
AATACGTTTTAAAACCTACAAATCACCATTCCAGCCGTCATTTTGAAATG
TCTCTTAACTTTTTGAACCTTCGTAACCTACAGCCTACTTCATACAATCT
GATTTGATCTAGGAGTTTGTTGAATCAAAAATAGAGTTTATTTCTCTATT
TATATTTTCTATTTTATAGGAGAAATCGAGAACATATGTAAGATATATAG
CGGAGAAACAATCAACATAAACTATGCGACGGAGAATCAGAGACACTTGA
AAGGCAATATTCCGTTTTGTATTTTGGGTACGTACACATTATTCATTATA
ACAAATTATTCCATTGCGGTCGATTTAATGTATATAAGATTTCATTTAAA
GGCACAAATTTATTTGTCACATTTTTTGGTTAAAATTCACATTGCATTTT
TGAATAAAACTTTTGAACAATGCTATCAAAATTTGATCCTTATAAATAAG
TTTTAACGGTTTTTCTTTTCTCTTTCCTTAGGATCAACACAATTGAAAAA
CATTTCAATGCTACTTGCTACTATAGACAGGAATGATGGATTCTGGGAGA
GATTTTTAGTTACAGTTCCAACTCCCTACCGTCCTAGTCCAGAGGAACAA
GTTTCTGCTAATCGCAATTTTGGCCAAGAATTCAACTTCGACATGAATGA
TTTTTATTCAAAACTGCAAGAGATATTGGATCCAGAAAATCCTCCAATCT
TTTATCTTGGTGCGAGTGCTGCTGAGTAAGTAGATAATTAAATAAAATAA
AGAAGGTGTACTAGATTACGAAATTGCGGAAACCGACATTTTTAATTTTT
ACATTTTTTTAGTACCTTAAGGGAAATAACTTTTGTGGGANAAGTAAGTA
GATAATTAAATTAAATAAACAAGAGCAGCCGCCGGCAGATTTTTTTGAAA
TATCTGTTCTTTTTTTCCAGGAGAGTAAATTTTATGGATAAATCTAGGAG
AGACTTTCCTCAAAACACCCAGGTAAAATCCAGGGGTCGCCTTAAAAACA
TCTGTTCTTCAAATCCAGGAACACATTTTAACAGATGATATAATCCAGGA
GAGCCCAGGATACAGAACAGATAGTTTTTTCCAGGAGAAAGGGACCTCAA
GAACAGATATTTCATACTTCCTAGCCGGTGGCTNTCCAATCTTTTATCTT
GGTGCGAGTGCTGCTGAGTAAGTAGATAATTAAATTAAGTAAAGAAGGTG
TACTAGATTACGAAATTGCGGAAACCGACATTTTTAATTTTTACATTTTT
TTAGTACCTTAAGGGAAATAACTTTTGAGGGAACTTATTTCAGCGATTCG
AGAGTGTGAAATCGTCATTTTTTGCGAAACCAATTTTCGTGGTAGACGAC
ACCCACTTGTTGCCTAAATAATTTTTTCCTAAAGATTTTCAAAAATTTTC
ACTGATATTTGCATTTTGCGGAACTAATTTTCGCGGCAGACTCCCAAAAA
TAATTTGCTTTCTTTCATTCCTTTCATAGATTTCTCAATAAATTGGAAAC
AGAATTCATTCACGACTCGAATTCGAAAATGAGGATGGCCATACCCGTGA
AATCTTCTAAATTGGCCGATACCATTCCAAAGATAGCAGTGGCGCTACAC
ACTATGGAAAAGGTTTTCGCTATTTTATGTGATAATTCTGCCATTGGTTT
GGACGAAGAAGTCTCACTCGAAATGGTGATACAAGCCAGAAATATCATAA
ACAATTCAGAG Coding sequence (CDS) from alignment at sc0000796:143343..146603- >TCONS_00030162 ID=TCONS_00030162|Name=TCONS_00030162|organism=Clytia hemisphaerica|type=CDS|length=4530bp|location=Sequence derived from alignment at sc0000796:143343..146603- (Clytia hemisphaerica) ATTTCTCAATAAATTGGAAACAGAATTCATTCACGACTCGAATTCGAAAA TGAGGATGGCCATACCCGTGAAATCTTCTAAATTGGCCGATACCATTCCA AAGATAGCAGTGGCGCTACACACTATGGAAAAGGTTTTCGCTATTTTATG TGATAATTCTGCCATTGGTTTGGACGAAGAAGTCTCACTCGAAATGGTGA TACAAGCCAGAAATATCATAAACAATTCAGAGGATCAACACAATTGAAAA ACATTTCAATGCTACTTGCTACTATAGACAGGAATGATGGATTCTGGGAG AGATTTTTAGTTACAGTTCCAACTCCCTACCGTCCTAGTCCAGAGGAACA AGTTTCTGCTAATCGCAATTTTGGCCAAGAATTCAACTTCGACATGAATG ATTTTTATTCAAAACTGCAAGAGATATTGGATCCAGAAAATCCTCCAATC TTTTATCTTGGTGCGAGTGCTGCTGAGAGAAATCGAGAACATATGTAAGA TATATAGCGGAGAAACAATCAACATAAACTATGCGACGGAGAATCAGAGA CACTTGAAAGGCAATATTCCGTTTTGTATTTTGGGAAAATCTTCGGCAAT AAAACATGGAATAACCGATCCCATTCCCGATTCGATCAAGGATTCCCTAA TTTCGTCTACTACAAGCAGTGGCTTGACGAAATTTCTTTCGAAAAAGTCA GAAGCTTGCATTGTGGACTCGGAGATCTCAGAATATATTTCGCGCTTTGC AAAGAATGATGAAAATAACACAGGCGTTCTTGATGCCAGCCATACTAACA ACAATAAATTTTATGTTGTCGAGAATTGGAGCACGGGTTCAAGTGCGTGA TGGATTCGTATTGAATTTGAATACATATTGGCTATTCGTAGGCCAACCCA CCACTGATTTCTCAATAAATTGGAAACAGAATTCATTCACGACTCGAATT CGAAAATGAGGATGGCCATACCCGTGAAATCTTCTAAATTGGCCGATACC ATTCCAAAGATAGCAGTGGCGCTACACACTATGGAAAAGGTTTTCGCTAT TTTATGTGATAATTCTGCCATTGGTTTGGACGAAGAAGTCTCACTCGAAA TGGTGATACAAGCCAGAAATATCATAAACAATTCAGAGGATCAACACAAT TGAAAAACATTTCAATGCTACTTGCTACTATAGACAGGAATGATGGATTC TGGGAGAGATTTTTAGTTACAGTTCCAACTCCCTACCGTCCTAGTCCAGA GGAACAAGTTTCTGCTAATCGCAATTTTGGCCAAGAATTCAACTTCGACA TGAATGATTTTTATTCAAAACTGCAAGAGATATTGGATCCAGAAAATCCT CCAATCTTTTATCTTGGTGCGAGTGCTGCTGAGAGAAATCGAGAACATAT GTAAGATATATAGCGGAGAAACAATCAACATAAACTATGCGACGGAGAAT CAGAGACACTTGAAAGGCAATATTCCGTTTTGTATTTTGGGAAAATCTTC GGCAATAAAACATGGAATAACCGATCCCATTCCCGATTCGATCAAGGATT CCCTAATTTCGTCTACTACAAGCAGTGGCTTGACGAAATTTCTTTCGAAA AAGTCAGAAGCTTGCATTGTGGACTCGGAGATCTCAGAATATATTTCGCG CTTTGCAAAGAATGATGAAAATAACACAGGCGTTCTTGATGCCAGCCATA CTAACAACAATAAATTTTATGTTGTCGAGAATTGGAGCACGGGTTCAAGT GCGTGATGGATTCGTATTGAATTTGAATACATATTGGCTATTCGTAGGCC AACCCACCACTGATTTCTCAATAAATTGGAAACAGAATTCATTCACGACT CGAATTCGAAAATGAGGATGGCCATACCCGTGAAATCTTCTAAATTGGCC GATACCATTCCAAAGATAGCAGTGGCGCTACACACTATGGAAAAGGTTTT CGCTATTTTATGTGATAATTCTGCCATTGGTTTGGACGAAGAAGTCTCAC TCGAAATGGTGATACAAGCCAGAAATATCATAAACAATTCAGAGGATCAA CACAATTGAAAAACATTTCAATGCTACTTGCTACTATAGACAGGAATGAT GGATTCTGGGAGAGATTTTTAGTTACAGTTCCAACTCCCTACCGTCCTAG TCCAGAGGAACAAGTTTCTGCTAATCGCAATTTTGGCCAAGAATTCAACT TCGACATGAATGATTTTTATTCAAAACTGCAAGAGATATTGGATCCAGAA AATCCTCCAATCTTTTATCTTGGTGCGAGTGCTGCTGAGAGAAATCGAGA ACATATGTAAGATATATAGCGGAGAAACAATCAACATAAACTATGCGACG GAGAATCAGAGACACTTGAAAGGCAATATTCCGTTTTGTATTTTGGGAAA ATCTTCGGCAATAAAACATGGAATAACCGATCCCATTCCCGATTCGATCA AGGATTCCCTAATTTCGTCTACTACAAGCAGTGGCTTGACGAAATTTCTT TCGAAAAAGTCAGAAGCTTGCATTGTGGACTCGGAGATCTCAGAATATAT TTCGCGCTTTGCAAAGAATGATGAAAATAACACAGGCGTTCTTGATGCCA GCCATACTAACAACAATAAATTTTATGTTGTCGAGAATTGGAGCACGGGT TCAAGTGCGTGATGGATTCGTATTGAATTTGAATACATATTGGCTATTCG TAGGCCAACCCACCACTGATTTCTCAATAAATTGGAAACAGAATTCATTC ACGACTCGAATTCGAAAATGAGGATGGCCATACCCGTGAAATCTTCTAAA TTGGCCGATACCATTCCAAAGATAGCAGTGGCGCTACACACTATGGAAAA GGTTTTCGCTATTTTATGTGATAATTCTGCCATTGGTTTGGACGAAGAAG TCTCACTCGAAATGGTGATACAAGCCAGAAATATCATAAACAATTCAGAG GATCAACACAATTGAAAAACATTTCAATGCTACTTGCTACTATAGACAGG AATGATGGATTCTGGGAGAGATTTTTAGTTACAGTTCCAACTCCCTACCG TCCTAGTCCAGAGGAACAAGTTTCTGCTAATCGCAATTTTGGCCAAGAAT TCAACTTCGACATGAATGATTTTTATTCAAAACTGCAAGAGATATTGGAT CCAGAAAATCCTCCAATCTTTTATCTTGGTGCGAGTGCTGCTGAGAGAAA TCGAGAACATATGTAAGATATATAGCGGAGAAACAATCAACATAAACTAT GCGACGGAGAATCAGAGACACTTGAAAGGCAATATTCCGTTTTGTATTTT GGGAAAATCTTCGGCAATAAAACATGGAATAACCGATCCCATTCCCGATT CGATCAAGGATTCCCTAATTTCGTCTACTACAAGCAGTGGCTTGACGAAA TTTCTTTCGAAAAAGTCAGAAGCTTGCATTGTGGACTCGGAGATCTCAGA ATATATTTCGCGCTTTGCAAAGAATGATGAAAATAACACAGGCGTTCTTG ATGCCAGCCATACTAACAACAATAAATTTTATGTTGTCGAGAATTGGAGC ACGGGTTCAAGTGCGTGATGGATTCGTATTGAATTTGAATACATATTGGC TATTCGTAGGCCAACCCACCACTGATTTCTCAATAAATTGGAAACAGAAT TCATTCACGACTCGAATTCGAAAATGAGGATGGCCATACCCGTGAAATCT TCTAAATTGGCCGATACCATTCCAAAGATAGCAGTGGCGCTACACACTAT GGAAAAGGTTTTCGCTATTTTATGTGATAATTCTGCCATTGGTTTGGACG AAGAAGTCTCACTCGAAATGGTGATACAAGCCAGAAATATCATAAACAAT TCAGAGGATCAACACAATTGAAAAACATTTCAATGCTACTTGCTACTATA GACAGGAATGATGGATTCTGGGAGAGATTTTTAGTTACAGTTCCAACTCC CTACCGTCCTAGTCCAGAGGAACAAGTTTCTGCTAATCGCAATTTTGGCC AAGAATTCAACTTCGACATGAATGATTTTTATTCAAAACTGCAAGAGATA TTGGATCCAGAAAATCCTCCAATCTTTTATCTTGGTGCGAGTGCTGCTGA GAGAAATCGAGAACATATGTAAGATATATAGCGGAGAAACAATCAACATA AACTATGCGACGGAGAATCAGAGACACTTGAAAGGCAATATTCCGTTTTG TATTTTGGGAAAATCTTCGGCAATAAAACATGGAATAACCGATCCCATTC CCGATTCGATCAAGGATTCCCTAATTTCGTCTACTACAAGCAGTGGCTTG ACGAAATTTCTTTCGAAAAAGTCAGAAGCTTGCATTGTGGACTCGGAGAT CTCAGAATATATTTCGCGCTTTGCAAAGAATGATGAAAATAACACAGGCG TTCTTGATGCCAGCCATACTAACAACAATAAATTTTATGTTGTCGAGAAT TGGAGCACGGGTTCAAGTGCGTGATGGATTCGTATTGAATTTGAATACAT ATTGGCTATTCGTAGGCCAACCCACCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00030162-exon-sc0000796-1575043694:146471..146603 | TCONS_00030162-exon-sc0000796-1575043694:146471..146603 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1575043694:145414..145602 | TCONS_00030162-exon-sc0000796-1575043694:145414..145602 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1575043694:144777..144884 | TCONS_00030162-exon-sc0000796-1575043694:144777..144884 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1575043694:144329..144572 | TCONS_00030162-exon-sc0000796-1575043694:144329..144572 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1575043694:143343..143574 | TCONS_00030162-exon-sc0000796-1575043694:143343..143574 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1510915933:146471..146603 | TCONS_00030162-exon-sc0000796-1510915933:146471..146603 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1510915933:145414..145602 | TCONS_00030162-exon-sc0000796-1510915933:145414..145602 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1510915933:144777..144884 | TCONS_00030162-exon-sc0000796-1510915933:144777..144884 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1510915933:144329..144572 | TCONS_00030162-exon-sc0000796-1510915933:144329..144572 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1510915933:143343..143574 | TCONS_00030162-exon-sc0000796-1510915933:143343..143574 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1491911889:146471..146603 | TCONS_00030162-exon-sc0000796-1491911889:146471..146603 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1491911889:145414..145602 | TCONS_00030162-exon-sc0000796-1491911889:145414..145602 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1491911889:144777..144884 | TCONS_00030162-exon-sc0000796-1491911889:144777..144884 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1491911889:144329..144572 | TCONS_00030162-exon-sc0000796-1491911889:144329..144572 | Clytia hemisphaerica | exon |
| TCONS_00030162-exon-sc0000796-1491911889:143343..143574 | TCONS_00030162-exon-sc0000796-1491911889:143343..143574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000796 | supercontig | sc0000796:143343..146603 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR025048 | DUF3987 |
Blast
The following BLAST results are available for this feature:
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