TCONS_00029818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029818
Unique NameTCONS_00029818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029818 ID=TCONS_00029818|Name=TCONS_00029818|organism=Clytia hemisphaerica|type=transcript|length=2426bp
GTAGTATTGGTAGCAGACCAATGGTATATCGAAACGtttgacaaaaaaag
aattgaaaaagttgaatatttcCTTCTACAGAACGTTAGTTGTTCAACCT
GAAGAATTGATGAAAGAAGAATTCATGTATGTGCAAAAAAAGAAAGTGAA
TCACGatcttaaaaataaagttaaagaGACTGCGCAAAGACAAGCGATAT
TCGCAAATGAACCAAACACTTTGCATGAAGTGACTGAAAGACTTTCCGAC
CTGGATTTCTTCACACCTATACAATATGAAAGGGAAACATGTTATGAGCT
TAATTTGACGGCACCGATTTACACCGAGGATTCGAAGCCGGATGAAATGG
TAACAAAGCCAATACCAAGACCAAGACGAAGACCACATATCGCTTCTTAT
GATTTATTTGGAGAGAGAACATCTTATGAAGAAATCTCAGATATGCCAAT
ATTGGATCCTGGTCTCATGCTTCCATGGTCAAGTTCGAGTGAAAGTGCAA
CAAACCTACAGCCAATTGATTTTGACGAAGGGAACGACGCAATGTCAGAC
GGAAATGATTCCATGGTGGTGGAAGTTGACTATGACGATATATTCTCAAT
CAATGAGGTTCCTGCGGTTTGGAGTGACCAGTCTGACCATCATTCTAATG
GATTCAACATTGCAACGAACGAGCCTTTCACACGAAATGAAACTATCATT
GCCCCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATTATTC
TGCAAATAGATTCAATATTGCATCGAACGAGCCTTTCACAAATGAAACTA
TCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGACCAGCCTGACCAT
TATTCTGCAAATAGATTCAATATTGCATCGAACGAGCCTTTCACAGATGA
AACTATCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTG
ACCATCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCTTTC
ACAAATGAAACTATCATTGCTCCTCAAAAGGTAACTGCGAGTTGGAGTGA
CCAGCCTGACCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGC
CTTTCACAAATGAAACTATCATTGCTTCTCAAAAGGTCCCTGCGGTTTGG
AGTGTCCAGCCTGACCACCATCATTCTGCAAATGGATTCAATATTGCAAC
GAACGAGCCTTTCACAAATGAAACTATCATTGCTCCTATCGATGCGAACC
CTCaagaatcaaaaatgaaaaaggaagaTATGGTTTGTAAAAATGTGACA
GGGCAGAATAGTGAAACAGAGGATGACTTATTAAAGAATTTCGAAAGTCA
TTACTCGTGTCCTATCTGCTTGGACATTGCTGACGATGCAGTGGAGTGTA
CGGATTGCTTTAAGATTTATTGCGGTGAATGTACACAAGGAATAAACACG
TGTCCCAGCTGTCGCTGCACACCTTCTGCATGGCAACCAAGTCGTAATGC
TCGACAATTCATTGGTAATTTAAAAACCGATTGTCCTAATGATGGATGCA
AGGAGAAGCCAACGCGGTCGAATCTGCAAGTTCATTTAGAGAAATGCGAA
TGGTCTTTGATTGCTTGCTCAAGCGATGGTTGTGATAAGAGAATCAAGCA
GAGTGGAATGGTGGAGCATTTGCTTCAATGTGGTCATTGTTTGATAAAGT
GTTCGTCTAAAGGTTGTTTAGAACTGGTCAAAAGGAAGGATGTGGAGGAC
CACAAGGATCGATGCTTATTTACCAATATCAATTGTATGAATTGCAACGA
AATGTTAGTACGCAAAAATGAAAGTATCCATTTGAATATTTGTAAAGAGA
AGATAATCAATTGCATGTTTTGTGGTTTTTCAGACACCAGAATGAATGTG
ATGGTACATTCGGTGCGTGTTCATTACGAGAAGGTTGCACACCCTTTCGG
TGAGATGTTGGAATCTATCAGAGTGCATCGATCGGTGTCGAATCATTATC
CTTCGTATTTGCCGCCTTGAAAACGTCGTATGATAACGTATTTTaagtaa
atttttgaaagatttattttgaaatttcaatctgGTCATTTCCAATCCAG
TCTGTTTAATGGTGATTTACAAAATAATTTGTCTTGGGATTTGTTCATTA
AAtgaacagaaaaataaaaatgggggttggaaattgtaactacgaaaacc
caaaaataaggtaaatataggctaaaatcaggctatttagagcaaaataa
gggaccttctctttggAGTGTTTAGGCACACTCATGGGTCCAAAGTGGCT
ATCATTTCCAAAGTTTTCTAGCTAAAACGTGGAAGGAAGGAAGTATTTTG
GAAAACGGAATATAATCAAATGGCGAGGAATAGATTTTGGCTAAAATAAG
TCACAGGAAACAAAGTTTGATAGAGG
Run BLAST on NCBI

transcript from alignment at sc0000771:136477..140881+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029818 ID=TCONS_00029818|Name=TCONS_00029818|organism=Clytia hemisphaerica|type=transcript|length=4405bp|location=Sequence derived from alignment at sc0000771:136477..140881+ (Clytia hemisphaerica)
GTAGTATTGGTAGCAGACCAATGGTATATCGAAACGtttgacaaaaaaag
aattgaaaaagttgaatatttcCTTCTACAGAACGTTAGTTGTTCAACCT
GAAGAATTGATGAAAGAAGAATTCATGTATGTGCAAAAAAAGAAAGGTAC
TTTTTATTGACTCTTTTTTATTAGGTAAAAATCTTTCTTATTAGTAGGTA
AAAAAAGACAAGTGAATATTAGCCATCAAAAAAGACTTACACCATGCcat
ctcacagacccggtaggtttttttcagccagtaggggttaacggactgaa
acttgatggggattgatattcctgtatttttttatggcttgggatttaaa
ttctattgttttgaagTCAGAAAAGTCAGTGGGGATTGGGAAAGAGCATA
TTATTTTGCAGTATGGATCAGTttgtttaattattttcagtgggaacaGA
AGTTTTAGTATAATTTTCAACTGGAGAAGATATttcggccaatttttcca
gtggaaaagggtcccagtgggtctgtgagaagggggtgtacttTCCAATG
CCAACTTCTCTCTTCGATTAACCAACCCCATCAAACAGAGATCTAGGCCN
ACTTTCCAATACCAACTTCTCTCTTCGATTACCTAACCCCATCAAACAGA
GATATAGGCCCTAGTAGGTGTTGATTATAACATTATGAGATCGTTCTTTT
TGCTATGAGAAGACCTCTTTGTCCTAGGCTTAGGTGAGGAGAGAGCTTCT
TGTCGACTCTTCAGGATACTAAAGTTTTTTGTGTATCCATTTCTTTTTCA
TCGTTTATCACGTTTATATAACTATTGTATCTATGAACTTTCCCTTTTCA
GAAATAGTGAATCACGatcttaaaaataaagttaaagaGACTGCGCAAAG
ACAAGCGATATTCGCAAATGAACCAAACACTTTGCATGAAGTGACTGAAA
GACTTTCCGACCTGGATTTCTTCACACCTATACAATATGAAAGGGAAACA
TGTTATGAGCTTAATTTGACGGCACCGATTTACACCGAGGATTCGAAGCC
GGATGAAATGGTAACAAAGCCAATACCAAGACCAAGACGAAGACCACATA
TCGCTTCTTATGATTTATTTGGAGAGAGAACATCTTATGAAGAAATCTCA
GATATGCCAAGTAACGTGTTATCGAGCTGTTTGCAATTTCCCTTTCTTAC
TTTCTTCCTTTCTTACATTTCTTCCCTCCAAGATttattataagattttt
tttggaGTGAATTATTTATCCCAAGCCAAATTATTTCTGACATGACAAAT
TTAAtcattcaaaaaatcattaaaattaaaAGTACAATTATGAATCACTT
GAttataaaacatatatttatcGGTTCAATCGGTTTCTGAACGTTCCTGA
CTTGTGAAGGGCAAGTAGGATATTCACAATGCCCAAATGTGATTTGTTAC
GGGGATTAGGTCATAATTTTCCAACTTGTTTAAAGGGGTTATGACTAACT
AACTCTCACTAAATGACTGTTTGTAGCTGATGGTTTATCCCATTGAATGA
TTTGAgttaatcttgatttttttccttgGGATAAAAGATGATTCAAActt
gattttcagaaaattggatGATGTATTAAAAATATGTATGTTATGTATGC
TGTGTGATATTCTATTTTATTCTATTTCTAGTATTGGATCCTGGTCTCAT
GCTTCCATGGTCAAGTTCGAGTGAAAGTGCAACAAACCTACAGCCAATTG
ATTTTGACGAAGGGAACGACGCAATGTCAGACGGAAATGATTCCATGGTG
GTGGAAGTTGACTATGACGATATATTCTCAATCAATGAGGTTCCTGCGGT
TTGGAGTGACCAGTCTGACCATCATTCTAATGGATTCAACATTGCAACGA
ACGAGCCTTTCACACGAAATGAAACTATCATTGCCCCTCAAAAGGTAACT
GCGAGTTGGAGTGACCAGCCTGACCATTATTCTGCAAATAGATTCAATAT
TGCATCGAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGG
TCCCTGCGGTTTGGAGTGACCAGCCTGACCATTATTCTGCAAATAGATTC
AATATTGCATCGAACGAGCCTTTCACAGATGAAACTATCATTACTCCTCA
AAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCATCATCATTCTGCAA
ATGGATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTATCATT
GCTCCTCAAAAGGTAACTGCGAGTTGGAGTGACCAGCCTGACCATCATTC
TGCAAATGGATTCAACATTACAACGAACGAGCCTTTCACAAATGAAACTA
TCATTGCTTCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGCCTGACCAC
CATCATTCTGCAAATGGATTCAATATTGCATCGAACGAGCCTTTCACAAA
TGAAACTATCATTACTCCTCAAAAGGTCCCTGCGGTTTGGAGTGTCCAGC
CTGACCATCATCATTCTGCAAATGGATTCAACATTACAACGAACGAGCCT
TTCACAAATGAAACTATCATTACTCCTCAAAAGGTAACTACGAGTTGGAG
TGACCAGCCTGACCATCATTCTGCAAATGGATTCAACATTACAACGAACG
AGCCTTTCACAAATGAAACTATCATTGCTTCTCAAAAGGTCCCTGCGGTT
TGGAGTGTCCAGCCTGACCATCATCATTCTGCAAATGGATTCAACATTAC
AACGAACGAGCCTTTCACAAATGAAACTATCATTACTCCTCAAAAGGTAA
CTGCGAGTTGGAGTGACCAGCCTGACCATCATTCTGCAAATGGATTCAAT
ATTACAACGAACGAGCCTTTCACAAATGAAACTATCATTGCTCCTATCGA
TGCGAACCCTCaagaatcaaaaatgaaaaaggaagaTATGGTTTGTAAAA
ATGTGACAGGGCAGAATAGTGGTAAGATTTCTTTGTCAGGAAACTGGTTT
TaagttttcataaaaatttttatttttataacatATTCATAAATTTCGAT
CAAAATACGTCGGTTTGCATTCAAGAAAATAAACGACTCAAACGGAAAAA
GCCATTTCAGCGAAAAcaaaatgttatcaaaattttgttaaattgtCAAA
AGCTTCTCCTACGGCGCCCTAAAAATTCAATCGAGAGTAATTTCCTTATC
TGTTTGTCAGTTTATTGTTTCTTTTGCTCGAAAAGTATTTTCCCTACAAT
ACTCGCTTTAGAATTTCTTTTATCTCTTATTTTCACCCTTAGAAACAGAG
GATGACTTATTAAAGAATTTCGAAAGTCATTACTCGTGTCCTATCTGCTT
GGACATTGCTGACGATGCAGTGGAGTGTACGGATTGCTTTAAGATTTATT
GCGGTGAATGTACACAAGGAATAAACACGTGTCCCAGCTGTCGCTGCACA
CCTTCTGCATGGCAACCAAGTCGTAATGCTCGACAATTCATTGGTAATTT
AAAAACCGATTGTCCTAATGATGGATGCAAGGAGAAGCCAACGCGGTCGA
ATCTGCAAGTTCATTTAGAGAAATGCGAATGGTCTTTGATTGCTTGCTCA
AGCGATGGTTGTGATAAGAGAATCAAGCAGAGTGGAATGGTGGAGCATTT
GCTTCAATGTGGTCATTGTTTGATAAAGTGTTCGTCTAAAGGTTGTTTAG
AACTGGTCAAAAGGAAGGATGTGGAGGACCACAAGGATCGATGCTTATTT
ACCAATATCAATTGTATGAATTGCAACGAAATGTTAGTACGCAAAAATGA
AAGTATCCATTTGAATATTTGTAAAGAGAAGATAATCAATTGCATGTTTT
GTGGTTTTTCAGACACCAGAATGAATGTGATGGTACATTCGGTGCGTGTT
CATTACGAGAAGGTTGCACACCCTTTCGGTGAGATGTTGGAATCTATCAG
AGTGCATCGATCGGTGTCGAATCATTATCCTTCGTATTTGCCGCCTTGAA
AACGTCGTATGATAACGTATTTTaagtaaatttttgaaagatttattttg
aaatttcaatctgGTCATTTCCAATCCAGTCTGTTTAATGGTGATTTACA
AAATAATTTGTCTTGGGATTTGTTCATTAAAtgaacagaaaaataaaaat
gggggttggaaattgtaactacgaaaacccaaaaataaggtaaatatagg
ctaaaatcaggctatttagagcaaaataagggaccttctctttggAGTGT
TTAGGCACACTCATGGGTCCAAAGTGGCTATCATTTCCAAAGTTTTCTAG
CTAAAACGTGGAAGGAAGGAAGTATTTTGGAAAACGGAATATAATCAAAT
GGCGAGGAATAGATTTTGGCTAAAATAAGTCACAGGAAACAAAGTTTGAT
AGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017038XLOC_017038Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029818-exon-sc0000771-1491911889:136477..136622TCONS_00029818-exon-sc0000771-1491911889:136477..136622Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1510915933:136477..136622TCONS_00029818-exon-sc0000771-1510915933:136477..136622Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1575043694:136477..136622TCONS_00029818-exon-sc0000771-1575043694:136477..136622Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1491911889:137334..137636TCONS_00029818-exon-sc0000771-1491911889:137334..137636Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1510915933:137334..137636TCONS_00029818-exon-sc0000771-1510915933:137334..137636Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1575043694:137334..137636TCONS_00029818-exon-sc0000771-1575043694:137334..137636Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1491911889:138158..138905TCONS_00029818-exon-sc0000771-1491911889:138158..138905Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1510915933:138158..138905TCONS_00029818-exon-sc0000771-1510915933:138158..138905Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1575043694:138158..138905TCONS_00029818-exon-sc0000771-1575043694:138158..138905Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1491911889:139332..139447TCONS_00029818-exon-sc0000771-1491911889:139332..139447Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1510915933:139332..139447TCONS_00029818-exon-sc0000771-1510915933:139332..139447Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1575043694:139332..139447TCONS_00029818-exon-sc0000771-1575043694:139332..139447Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1491911889:139769..140881TCONS_00029818-exon-sc0000771-1491911889:139769..140881Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1510915933:139769..140881TCONS_00029818-exon-sc0000771-1510915933:139769..140881Clytia hemisphaericaexon
TCONS_00029818-exon-sc0000771-1575043694:139769..140881TCONS_00029818-exon-sc0000771-1575043694:139769..140881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000771supercontigsc0000771:136477..140881 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186079	0	0.0959812	0	1.18135e-06	0	0	0	0.000103434	0	0	0	1.03922	2.36457e-07	0	0	0	0	0	0	0	0.239945	0	0	0.176652	0.955052	0	0.339124	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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