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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029784 ID=TCONS_00029784|Name=TCONS_00029784|organism=Clytia hemisphaerica|type=transcript|length=1296bp CACATTTCACACCCAATTACGACAAATATTTGACGATAAAAGAGGACGGA ATTTCAATTTTCGCACCATGAACGGCACGCAACTCCTTCAAAGAAGGTTG ATGAGATTTATAAAGGAAACTGATCAAAATTATCCATCTCAATTTTACGT AGAGCTTTGATATAATGATTACTAAATTTCTGTTAATTCTGGGACTTGCT GTCCTTGGTGTCTTTGgTGCTGAATCACGATGTTTCGATATGACAGTCAG GGAATCGTGTGAGAATATGAAAACATATTTCGGAGATATGTTCTGCAAAA ATCCTGTCTTTTACCAAAACACGTGTAAACTTTTCTGCAAATCATGCAAA CCTGATGAATCTGGAGCTGAACTAAACTCCAAATGTGGTATTTCCAAAGT GTTGACAAACAAACCACATTTTCATCGAGTGCGTCGTGTCGTTCATGGCA ACAATGCAAAAGAAGGGTCTTTCCCATGGCTTGCTTCTCTTAGTTATTTT GGTAAACACTTTTGTGGTGGTGCCCTTATTGACCGACAATGGGTGTTGAC AGCAGCTCATTGCATTGACGAGGACCAACGTGGTGATTATAGAAAAGTTG TCAGTGTTGATCTTGGAGTTCACCACCAATCAAATATCTTGAAAAATCCG AAATTCGAACGGTTTAGTATCAAACGTGTTATCAAATACCCTGGGTTCCC AAACGACCTCTCAATGCTAGACTATTCTAAACTGAAAGACGACATTGCGC TAATCCAATTAGATCGACCAGCAGCCCTGAACGACCGCGTGGGAACAGTT TGTCTTCCAAAGAAAGGAGTTTATCCGAAAGTTGGAACTAAATGCATACT TGCAGGTTGGGGGTATACAAATTGGGAAAAGAAGACTGATGCAGATATCG TACAACAGACATTTCTTCCCATCGCTGCGTCCGATAAACCACATCCTGGT TGCCATAACAACCCTAAAGTTATGTGTTTCGGTGAAGGATTTAACGCTAA AAATCCGACTGGTTGTCGCGGAGATTCTGGAGGGCCAATGATCTGCCAGG ATGCTGATGGTCGTTGGGTGGCTGAAGGAGTTAATAGCTATCTCCACTCT TATTGCAAATACTTTCTGGCTAATGCTCCAGTTAACCAATATATTGACTG GATTCATAAACAAATGAATACATATAAATAAATAGTATTTGTGAATAAAA AACAGCTGACTTTTTTCAATCCTGTTCTAAGAGGGTGCTTATTGGTATAA TACTGTTATCGAACTTTAATAAGATTTAATTTCGCTAtaatctcgg Run BLAST on NCBI protein sequence of TCONS_00029784-protein >TCONS_00029784-protein ID=TCONS_00029784-protein|Name=TCONS_00029784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MITKFLLILGLAVLGVFGAESRCFDMTVRESCENMKTYFGDMFCKNPVFY QNTCKLFCKSCKPDESGAELNSKCGISKVLTNKPHFHRVRRVVHGNNAKE GSFPWLASLSYFGKHFCGGALIDRQWVLTAAHCIDEDQRGDYRKVVSVDL GVHHQSNILKNPKFERFSIKRVIKYPGFPNDLSMLDYSKLKDDIALIQLD RPAALNDRVGTVCLPKKGVYPKVGTKCILAGWGYTNWEKKTDADIVQQTF LPIAASDKPHPGCHNNPKVMCFGEGFNAKNPTGCRGDSGGPMICQDADGR WVAEGVNSYLHSYCKYFLANAPVNQYIDWIHKQMNTYK Run BLAST on NCBI transcript from alignment at sc0000769:82309..85114- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029784 ID=TCONS_00029784|Name=TCONS_00029784|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at sc0000769:82309..85114- (Clytia hemisphaerica) CACATTTCACACCCAATTACGACAAATATTTGACGATAAAAGAGGACGGA
ATTTCAATTTTCGCACCATGAACGGCACGCAACTCCTTCAAAGAAGGTTG
ATGAGATTTATAAAGGAAACTGATCAAAATTATCCATCTCAATTTTACGT
AGAGCTTTGATATAATGATTACTAAATTTCTGTTAATTCTGGGACTTGCT
GTCCTTGGTGTCTTTGGTAAGTTCAAGCTACGAAGAATTGCTTTTATTAT
AATCTTTCTACAGCAATAGAAGAATATGGAAGATAACATTTTTAAGCTAC
GAAAAACAGCTTTAGTTAACTTCAGCACCCATGCTGTAAAGGTTTTTCTA
TCAAAATTTGGGATGAAAAATTGGTCAAAAAGCACTATTTTCAAGATTTT
GAGACAAATGAGCTTTTAGAAAATTTTTCCAAAATTTATTTTTAGTTCAG
TAAAAGATACACCATATACCGCAAAAAAAATTTTCAAAATGTTTTTTCTT
CGCCGAAAATAATACTCTTCTTCACAAAAGTCTTTATTTTCTTCTTCATC
AAACTTTTTCATTGCGATCCTTAAATTTTCTCAAGGACTTAAGGATGATT
GGCCTAACAGAAGATGTTTAACATGCCACAGTTTTGTGTGCTACACCACG
TAGAAATTTAAATTTATATTTTGTACGTGGCAAATATTAAAAATTCATTA
TGGTCAGAGTCCTTAAATGGCGGTGTTTTGTTTTTACCAAAACTATAACT
AAACGTTATGATGTGGCAATATCCTATCGGGGAAAGCTTTGTCGGGGAAA
AGTGAACCAATTTTAGCAAGTAACGAATATTTTTACCCGACAAAAATTTT
CCTGTTTTGATAATCATCCTCAAGATACAAGACGAAGATACATTTTTCAT
ATTTCAGGTGCTGAATCACGATGTTTCGATATGACAGTCAGGGAATCGTG
TGAGAATATGAAAACATATTTCGGAGATATGTTCTGCAAAAATCCTGTCT
TTTACCAAAACACGTGTAAACTTTTCTGCAAATCATGCAAACCTGATGAA
TCTGGAGCTGAACTAAACTCCAAATGTGGTATTTCCAAAGTGTTGACAAA
CAAACCACATTTTCATCGAGTGCGTCGTGTCGTTCATGGCAACAATGCAA
AAGAAGGGTCTTTCCCATGGCTTGCTTCTCTTAGTTATTTTGGTAAACAC
TTTTGTGGTGGTGCCCTTATTGACCGACAATGGGTGAGTAGCTTTTCATA
GATATGTTATCAATCTATCAGTCTTACAAATCTTGGAATATACGGTAAAT
ATGTTGAAACATGCACTGCCCAATGCTACGGAAAACGATATTTGTTACTA
GTGGTTCCAGCTCTATCCAGTGTGTCCCAAAAAGTGGTAAAATCCTCATG
ATTTATTCGAAATTTCATGACTTCCTTACTTAATATTTCACTCTCCAAAA
CCCATTCAATCATCTTGGTAATCGAGTATCTTTTGATTCAAGAGAGAATT
TTAATCTTATTTCAATAATTCTAAGCCCAGTCTAGATAACGAGTTTTGAG
GATTTTACTTTTATATACAAATTTGTCCACATTGTATACGGTATGGTAGC
TGTTTCTCCTCATTTTCATGCAGGTGTTGACAGCAGCTCATTGCATTGAC
GAGGACCAACGTGGTGATTATAGAAAAGTTGTCAGTGTTGATCTTGGAGT
TCACCACCAATCAAATATCTTGAAAAATCCGAAATTCGAACGGTTTAGTA
TCAAACGTGTTATCAAATACCCTGGGTTCCCAAACGACCTCTCAATGCTA
GACTATTCTAAACTGAAAGACGACATTGCGCTAATCCAATTAGATCGACC
AGCAGCCCTGAACGACCGCGTGGGAACAGTTTGTCTTCCAAAGAAAGGAG
TTTATCCGAAAGTTGGAACTAAATGCATACTTGCAGGTAATTCATCAGAT
TGCTCCAATCTCGTACGCAGATCCACTTGTACTGCAAAGAACATGGCGTT
GAAGTGTTTTCCAAAAATCCAGAGAAGGTTTTCAAAGAAAGGCTTCTTCT
TAGGTTACCCTAGTGTAGACGTTTAGTCAGTTTCTTGTCAGTCGCTCAAC
ATAACAAAGCAAACATTTTTATCCCCCTTCCTAATTTTTTTCAGTTACCG
GTGTTTGTCATAAGAATAAACAACTTGGCATACATTAGATATTATGTGAG
CCTTGTCTACTAGAGACGTCAATATCGATATAGTACCCTGCTGGTACACA
ACGTTTTTTCGACGTTTATCTAACGTTCACAACGTCCATATAACGTTAGA
TAAACGTTGAAACAACGTTATGTGCCAGCTGGGTAGGGCTTTTTATCATT
CTCTTCATACCTCAGGTTGGGGGTATACAAATTGGGAAAAGAAGACTGAT
GCAGATATCGTACAACAGACATTTCTTCCCATCGCTGCGTCCGATAAACC
ACATCCTGGTTGCCATAACAACCCTAAAGTTATGTGTTTCGGTGAAGGAT
TTAACGCTAAAAATCCGACTGGTTGTCGCGGAGATTCTGGAGGGCCAATG
ATCTGCCAGGATGCTGATGGTCGTTGGGTGGCTGAAGGAGTTAATAGCTA
TCTCCACTCTTATTGCAAATACTTTCTGGCTAATGCTCCAGTTAACCAAT
ATATTGACTGGATTCATAAACAAATGAATACATATAAATAAATAGTATTT
GTGAATAAAAAACAGCTGACTTTTTTCAATCCTGTTCTAAGAGGGTGCTT
ATTGGTATAATACTGTTATCGAACTTTAATAAGATTTAATTTCGCTATAA
TCTCGG Coding sequence (CDS) from alignment at sc0000769:82309..85114- >TCONS_00029784 ID=TCONS_00029784|Name=TCONS_00029784|organism=Clytia hemisphaerica|type=CDS|length=4068bp|location=Sequence derived from alignment at sc0000769:82309..85114- (Clytia hemisphaerica) GTTGGGGGTATACAAATTGGGAAAAGAAGACTGATGCAGATATCGTACAA CAGACATTTCTTCCCATCGCTGCGTCCGATAAACCACATCCTGGTTGCCA TAACAACCCTAAAGTTATGTGTTTCGGTGAAGGATTTAACGCTAAAAATC CGACTGGTTGTCGCGGAGATTCTGGAGGGCCAATGATCTGCCAGGATGCT GATGGTCGTTGGGTGGCTGAAGGAGTTAATAGCTATCTCCACTCTTATTG CAAATACTTTCTGGCTAATGCTCCAGTTAACCAATATATTGACTGGATTC ATAAACAAATGAATACATATAAATAAGTGTTGACAGCAGCTCATTGCATT GACGAGGACCAACGTGGTGATTATAGAAAAGTTGTCAGTGTTGATCTTGG AGTTCACCACCAATCAAATATCTTGAAAAATCCGAAATTCGAACGGTTTA GTATCAAACGTGTTATCAAATACCCTGGGTTCCCAAACGACCTCTCAATG CTAGACTATTCTAAACTGAAAGACGACATTGCGCTAATCCAATTAGATCG ACCAGCAGCCCTGAACGACCGCGTGGGAACAGTTTGTCTTCCAAAGAAAG GAGTTTATCCGAAAGTTGGAACTAAATGCATACTTGCAGGTGCTGAATCA CGATGTTTCGATATGACAGTCAGGGAATCGTGTGAGAATATGAAAACATA TTTCGGAGATATGTTCTGCAAAAATCCTGTCTTTTACCAAAACACGTGTA AACTTTTCTGCAAATCATGCAAACCTGATGAATCTGGAGCTGAACTAAAC TCCAAATGTGGTATTTCCAAAGTGTTGACAAACAAACCACATTTTCATCG AGTGCGTCGTGTCGTTCATGGCAACAATGCAAAAGAAGGGTCTTTCCCAT GGCTTGCTTCTCTTAGTTATTTTGGTAAACACTTTTGTGGTGGTGCCCTT ATTGACCGACAATGGATGATTACTAAATTTCTGTTAATTCTGGGACTTGC TGTCCTTGGTGTCTTTGGTTGGGGGTATACAAATTGGGAAAAGAAGACTG ATGCAGATATCGTACAACAGACATTTCTTCCCATCGCTGCGTCCGATAAA CCACATCCTGGTTGCCATAACAACCCTAAAGTTATGTGTTTCGGTGAAGG ATTTAACGCTAAAAATCCGACTGGTTGTCGCGGAGATTCTGGAGGGCCAA TGATCTGCCAGGATGCTGATGGTCGTTGGGTGGCTGAAGGAGTTAATAGC TATCTCCACTCTTATTGCAAATACTTTCTGGCTAATGCTCCAGTTAACCA ATATATTGACTGGATTCATAAACAAATGAATACATATAAATAAGTGTTGA CAGCAGCTCATTGCATTGACGAGGACCAACGTGGTGATTATAGAAAAGTT GTCAGTGTTGATCTTGGAGTTCACCACCAATCAAATATCTTGAAAAATCC GAAATTCGAACGGTTTAGTATCAAACGTGTTATCAAATACCCTGGGTTCC CAAACGACCTCTCAATGCTAGACTATTCTAAACTGAAAGACGACATTGCG CTAATCCAATTAGATCGACCAGCAGCCCTGAACGACCGCGTGGGAACAGT TTGTCTTCCAAAGAAAGGAGTTTATCCGAAAGTTGGAACTAAATGCATAC TTGCAGGTGCTGAATCACGATGTTTCGATATGACAGTCAGGGAATCGTGT GAGAATATGAAAACATATTTCGGAGATATGTTCTGCAAAAATCCTGTCTT TTACCAAAACACGTGTAAACTTTTCTGCAAATCATGCAAACCTGATGAAT CTGGAGCTGAACTAAACTCCAAATGTGGTATTTCCAAAGTGTTGACAAAC AAACCACATTTTCATCGAGTGCGTCGTGTCGTTCATGGCAACAATGCAAA AGAAGGGTCTTTCCCATGGCTTGCTTCTCTTAGTTATTTTGGTAAACACT TTTGTGGTGGTGCCCTTATTGACCGACAATGGATGATTACTAAATTTCTG TTAATTCTGGGACTTGCTGTCCTTGGTGTCTTTGGTTGGGGGTATACAAA TTGGGAAAAGAAGACTGATGCAGATATCGTACAACAGACATTTCTTCCCA TCGCTGCGTCCGATAAACCACATCCTGGTTGCCATAACAACCCTAAAGTT ATGTGTTTCGGTGAAGGATTTAACGCTAAAAATCCGACTGGTTGTCGCGG AGATTCTGGAGGGCCAATGATCTGCCAGGATGCTGATGGTCGTTGGGTGG CTGAAGGAGTTAATAGCTATCTCCACTCTTATTGCAAATACTTTCTGGCT AATGCTCCAGTTAACCAATATATTGACTGGATTCATAAACAAATGAATAC ATATAAATAAGTGTTGACAGCAGCTCATTGCATTGACGAGGACCAACGTG GTGATTATAGAAAAGTTGTCAGTGTTGATCTTGGAGTTCACCACCAATCA AATATCTTGAAAAATCCGAAATTCGAACGGTTTAGTATCAAACGTGTTAT CAAATACCCTGGGTTCCCAAACGACCTCTCAATGCTAGACTATTCTAAAC TGAAAGACGACATTGCGCTAATCCAATTAGATCGACCAGCAGCCCTGAAC GACCGCGTGGGAACAGTTTGTCTTCCAAAGAAAGGAGTTTATCCGAAAGT TGGAACTAAATGCATACTTGCAGGTGCTGAATCACGATGTTTCGATATGA CAGTCAGGGAATCGTGTGAGAATATGAAAACATATTTCGGAGATATGTTC TGCAAAAATCCTGTCTTTTACCAAAACACGTGTAAACTTTTCTGCAAATC ATGCAAACCTGATGAATCTGGAGCTGAACTAAACTCCAAATGTGGTATTT CCAAAGTGTTGACAAACAAACCACATTTTCATCGAGTGCGTCGTGTCGTT CATGGCAACAATGCAAAAGAAGGGTCTTTCCCATGGCTTGCTTCTCTTAG TTATTTTGGTAAACACTTTTGTGGTGGTGCCCTTATTGACCGACAATGGA TGATTACTAAATTTCTGTTAATTCTGGGACTTGCTGTCCTTGGTGTCTTT GGTTGGGGGTATACAAATTGGGAAAAGAAGACTGATGCAGATATCGTACA ACAGACATTTCTTCCCATCGCTGCGTCCGATAAACCACATCCTGGTTGCC ATAACAACCCTAAAGTTATGTGTTTCGGTGAAGGATTTAACGCTAAAAAT CCGACTGGTTGTCGCGGAGATTCTGGAGGGCCAATGATCTGCCAGGATGC TGATGGTCGTTGGGTGGCTGAAGGAGTTAATAGCTATCTCCACTCTTATT GCAAATACTTTCTGGCTAATGCTCCAGTTAACCAATATATTGACTGGATT CATAAACAAATGAATACATATAAATAAGTGTTGACAGCAGCTCATTGCAT TGACGAGGACCAACGTGGTGATTATAGAAAAGTTGTCAGTGTTGATCTTG GAGTTCACCACCAATCAAATATCTTGAAAAATCCGAAATTCGAACGGTTT AGTATCAAACGTGTTATCAAATACCCTGGGTTCCCAAACGACCTCTCAAT GCTAGACTATTCTAAACTGAAAGACGACATTGCGCTAATCCAATTAGATC GACCAGCAGCCCTGAACGACCGCGTGGGAACAGTTTGTCTTCCAAAGAAA GGAGTTTATCCGAAAGTTGGAACTAAATGCATACTTGCAGGTGCTGAATC ACGATGTTTCGATATGACAGTCAGGGAATCGTGTGAGAATATGAAAACAT ATTTCGGAGATATGTTCTGCAAAAATCCTGTCTTTTACCAAAACACGTGT AAACTTTTCTGCAAATCATGCAAACCTGATGAATCTGGAGCTGAACTAAA CTCCAAATGTGGTATTTCCAAAGTGTTGACAAACAAACCACATTTTCATC GAGTGCGTCGTGTCGTTCATGGCAACAATGCAAAAGAAGGGTCTTTCCCA TGGCTTGCTTCTCTTAGTTATTTTGGTAAACACTTTTGTGGTGGTGCCCT TATTGACCGACAATGGATGATTACTAAATTTCTGTTAATTCTGGGACTTG CTGTCCTTGGTGTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00029784-exon-sc0000769-1575043694:84899..85114 | TCONS_00029784-exon-sc0000769-1575043694:84899..85114 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1575043694:83882..84207 | TCONS_00029784-exon-sc0000769-1575043694:83882..84207 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1575043694:83179..83491 | TCONS_00029784-exon-sc0000769-1575043694:83179..83491 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1575043694:82309..82749 | TCONS_00029784-exon-sc0000769-1575043694:82309..82749 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1510915933:84899..85114 | TCONS_00029784-exon-sc0000769-1510915933:84899..85114 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1510915933:83882..84207 | TCONS_00029784-exon-sc0000769-1510915933:83882..84207 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1510915933:83179..83491 | TCONS_00029784-exon-sc0000769-1510915933:83179..83491 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1510915933:82309..82749 | TCONS_00029784-exon-sc0000769-1510915933:82309..82749 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1491911889:84899..85114 | TCONS_00029784-exon-sc0000769-1491911889:84899..85114 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1491911889:83882..84207 | TCONS_00029784-exon-sc0000769-1491911889:83882..84207 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1491911889:83179..83491 | TCONS_00029784-exon-sc0000769-1491911889:83179..83491 | Clytia hemisphaerica | exon |
| TCONS_00029784-exon-sc0000769-1491911889:82309..82749 | TCONS_00029784-exon-sc0000769-1491911889:82309..82749 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000769 | supercontig | sc0000769:82309..85114 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
| GO:0004252 | serine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00029784 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.263e-30 Identity = 89/266 (33.46%), Postives = 121/266 (45.49%), Query Frame = 3
Query: 384 CGISKVLTNKPHFHRVRRVVHGNNAKEGSFPWLASLS-YFGKHFCGGALIDRQWVLTAAHCIDEDQRGDYRKVVSVDLGVHHQSNILKNPKFERFSIKRVIKYPGFPNDLSMLDYSKLKDDIALIQLDRPAALNDRVGTVCLPKKGVYPKVGTKCILAGWGYTNWEKKTDADIVQQTFLPIA--ASDKPHPGCHNNPKVMCFGEGFNAKNPTGCRGDSGGPMICQDADGRWVAEGVNSYLHSYCKYFLAN--APVNQYIDWIHKQM 1166
CG+ + P + R+V+G +A GS+PW SL G HFCGG+LI WV+TAAHC R V G Q + +N + I +V K P F S+L + +DI L++L PA + V VCLP GT C GWG T + D +QQ LP+ A K G ++C G A + C GDSGGP++CQ DG W G+ S+ C A V + I W+ K +
Sbjct: 19 CGVPAI---HPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC-------GVRTSDVVVAGEFDQGSDEEN--IQVLKIAKVFKNPKF----SIL---TVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAG----ASGVSSCMGDSGGPLVCQK-DGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPWVQKIL 260
The following BLAST results are available for this feature:
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