|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029780 ID=TCONS_00029780|Name=TCONS_00029780|organism=Clytia hemisphaerica|type=transcript|length=1561bp
GCACAAAACACGTACAAACACGATGTGTATTTTCTAGTAAGATCTGTGCA
AGCAGGTGCAGTAATCGTTAAGAcaagaaaagttttgttttgagtaGTGT
TTGGAGAGAAGGAAGGCTGATTGAAATCTCAACCAAAATGGGTCCCAAAT
TTGATTTCTTGTCACTAAATGTTGGCATCAAAACTGGAAGTAAGTCCGAT
GagcagaaaaaattcaaaaaagaaaacaattttagcAGCAAAGCAGATGC
AAAACGTTACTTTTACCTGGAAAAGATTCATGAGGAACAACCGGACATCG
TTTGTTTACAAGAGCAAATTCCGAAAGACGAAAAGGAGATAATCAATAAA
ACTTACACATTTTACGAGTCCTACAGTTCTGATAAACAAAGTGCCGTCCT
AGTTAAAAGTAGTCTTATCTCTAAAGATTCGATTCAGCACGTCAAGTTTA
ACGATTCCGATACTAAAGAATATTCGGAAATTCGAGCTCGCCTGGTATTG
GTAAAATTCACTCCAAAAGAATTAAACCATCCTATTTATGTAGGATCGTG
GCATGGGCCTTGGACTGGGAAATCAAAAACCGAGAAACAAGGGTATGTAG
AGGCGATACTCAAGGTAGTCAAAGAATATGCTGAAGATAATCCTTTTTTC
ATTGCTGGAGATTTCAACCTCAAACATAGTGATCTTCCAAAATTGCCAGA
TAATTGCTACAGTATCTCAGCTGACGCTGACAACATAGATTATTTGGTTA
TTGGTTGTGTAGGGGCAAAAGAACCGTCACAGGCGCAAAACAAAGTCACT
TTCAAGGACAAGAAGAGACAAGTATCTGCAGAGgttAGAGAATCCGGGTA
CAAAAGATCAGATGCAGAGTCATTCTTGGGTCACACACCTCAATTGGCAA
ATGTCACGATCACCGAAAAACAAAGCTCGTCGGATGTTGCAAGCCTTAGA
ACAGGCTTTTCAAGCTTTTTTTCCACCCAGAACATTGTTATATCTATTGC
AGCAtccctttttgtatttttgattttaaagaaaaatcgtTAAATTTTTT
TGGCAGTAAGGCacttttaaggccggtctccacttgcgcacgCTGCGATG
GCACTTTGTCAAGCAAAGCtaccacgctattggtcaaaggaaaaatgaag
caattccatcgGCGTGATccgacgtaacggttgaaaaaagttgaaatgtg
ttcaactttttcttcgagcgcgcgctacattttaatgacgtaatcttttt
tccaagcaaaaaggattgaaggcAAAAGGTGCGATCGCACCGCGCACAAG
TGGAGCCCTGCCTTTATACAGAAAAATAAAGCGACTTTCGAAACTTTGAT
CAAACTACTCTGATCAATTTTGTTGAAATTActgataacaagtgatactt
ttatggacctacctggttatgcatttaacacatatataattgatatctac
gtgagcatgaacgttatAAActatcattcagaacacaaatagtgacgatt
tattaaaattagtcgtttgtttcttataaaaaaaacgtttagaaaccaaa
atttcatgctc Run BLAST on NCBI transcript from alignment at sc0000769:48120..49995- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029780 ID=TCONS_00029780|Name=TCONS_00029780|organism=Clytia hemisphaerica|type=transcript|length=1876bp|location=Sequence derived from alignment at sc0000769:48120..49995- (Clytia hemisphaerica)
GCACAAAACACGTACAAACACGATGTGTATTTTCTAGTAAGATCTGTGCA
AGCAGGTGCAGTAATCGTTAAGACAAGAAAAGTTTTGTTTTGAGTAGTGT
TTGGAGAGAAGGAAGGCTGATTGAAATCTCAACCAAAATGGGTCCCAAAT
TTGATTTCTTGTCACTAAATGTTGGCATCAAAACTGGAAGTAAGTCCGAT
GAGCAGAAAAAATTCAAAAAAGAAAACAATTTTAGCAGCAAAGCAGATGC
AAAACGTTACTTTTACCTGGAAAAGATTCATGAGGAACAACCGGACATCG
TTTGTTTACAAGAGCAAATTCCGAAAGACGAAAAGGAGATAATCAATAAA
ACTTACACATTTTACGAGTCCTACAGTTCTGATAAACAAAGTGCCGTCCT
AGTTAAAAGTAGTCTTATCTCTAAAGATTCGATTCAGCACGTCAAGTTTA
ACGATTCCGATACTAAAGAATATTCGGAAATTCGAGCTCGCCTGGTATTG
GTAAAATTCACTCCAAAAGAATTAAACCATCCTATTTATGTAGGATCGTG
GCATGGGCCTTGGACTGGGAAATCAAAAACCGAGAAACAAGGGTATGTAG
AGGCGATACTCAAGGTAGTCAAAGAATATGCTGAAGATAATCCTTTTTTC
ATTGCTGGAGATTTCAACCTCAAACATAGTGATCTTCCAAAATTGCCAGA
TAATTGCTACAGTATCTCAGCTGACGCTGACAACATAGATTATTTGGTTA
TTGGTTGTGTAGGGGCAAAAGAACCGTCACAGGCGCAAAACAAAGTCACT
TTCAAGGACAAGAAGAGACAAGTATCTGCAGAGGTTGGTAAATTTTTATT
ATAACGTCAAACATAAATAACATAAACTTTTCTCTACCATGCCAGAAACA
AAAGTTTTGTGTTGAGTAGTGTTTGACAAAAAAAACAGACGCAATTGCAT
TATGGTATATCCTGAAAAGTACAAATATTGTTTTGGGAATGGATTTCTAG
TATATTTGATCAACTGAATCACGGTTCAACGCCAGAATTGCAGGGTATTC
TTATGATTTGGCCAATTTTCACACTGATATTCTTATTGAAGATATTCTTA
TAAAAAAGCGTGTACTCTCGAAAAATGTAATATTCTTTTCTTTTTTAGGT
TAGAGAATCCGGGTACAAAAGATCAGATGCAGAGTCATTCTTGGGTCACA
CACCTCAATTGGCAAATGTCACGATCACCGAAAAACAAAGCTCGTCGGAT
GTTGCAAGCCTTAGAACAGGCTTTTCAAGCTTTTTTTCCACCCAGAACAT
TGTTATATCTATTGCAGCATCCCTTTTTGTATTTTTGATTTTAAAGAAAA
ATCGTTAAATTTTTTTGGCAGTAAGGCACTTTTAAGGCCGGTCTCCACTT
GCGCACGCTGCGATGGCACTTTGTCAAGCAAAGCTACCACGCTATTGGTC
AAAGGAAAAATGAAGCAATTCCATCGGCGTGATCCGACGTAACGGTTGAA
AAAAGTTGAAATGTGTTCAACTTTTTCTTCGAGCGCGCGCTACATTTTAA
TGACGTAATCTTTTTTCCAAGCAAAAAGGATTGAAGGCAAAAGGTGCGAT
CGCACCGCGCACAAGTGGAGCCCTGCCTTTATACAGAAAAATAAAGCGAC
TTTCGAAACTTTGATCAAACTACTCTGATCAATTTTGTTGAAATTACTGA
TAACAAGTGATACTTTTATGGACCTACCTGGTTATGCATTTAACACATAT
ATAATTGATATCTACGTGAGCATGAACGTTATAAACTATCATTCAGAACA
CAAATAGTGACGATTTATTAAAATTAGTCGTTTGTTTCTTATAAAAAAAA
CGTTTAGAAACCAAAATTTCATGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029780-exon-sc0000769-1575043694:49163..49995 | TCONS_00029780-exon-sc0000769-1575043694:49163..49995 | Clytia hemisphaerica | exon |
| TCONS_00029780-exon-sc0000769-1575043694:48120..48847 | TCONS_00029780-exon-sc0000769-1575043694:48120..48847 | Clytia hemisphaerica | exon |
| TCONS_00029780-exon-sc0000769-1510915933:49163..49995 | TCONS_00029780-exon-sc0000769-1510915933:49163..49995 | Clytia hemisphaerica | exon |
| TCONS_00029780-exon-sc0000769-1510915933:48120..48847 | TCONS_00029780-exon-sc0000769-1510915933:48120..48847 | Clytia hemisphaerica | exon |
| TCONS_00029780-exon-sc0000769-1491911889:49163..49995 | TCONS_00029780-exon-sc0000769-1491911889:49163..49995 | Clytia hemisphaerica | exon |
| TCONS_00029780-exon-sc0000769-1491911889:48120..48847 | TCONS_00029780-exon-sc0000769-1491911889:48120..48847 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000769 | supercontig | sc0000769:48120..49995 - |
Blast
The following BLAST results are available for this feature:
|
