TCONS_00029746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029746
Unique NameTCONS_00029746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029746 ID=TCONS_00029746|Name=TCONS_00029746|organism=Clytia hemisphaerica|type=transcript|length=788bp
TCTAGAATATGCATAACATAGTATACACATGATAAACAAGGAGAAAAACA
AAACgaggaaataaaataattttagaaaTCAATAATGGTGATGCCCACGA
CGTGATATATGCTTTCTGAATCCAGTGCGCTAGGATGCCCTTCAAATTCA
GTTTTTGCGGGAAGGCTGAAAAAGAGCTTTTCCATGTGTTGGATTACAGC
CACAAAAACTTGCTAAATGTACCAACAGAGATTTACGAACATGCTCAAGC
GCTAGAAGATCTTTATTTGGATGCCAATCAATTAAAGGATTTACCAAAGg
CCCTTTTCACTTTGCAACATTTGAGAACATTGAACATCAGCGATAATGAA
ATCATTTCACTACCGTCAAACGTCTCCAATCTCATCCATCTTATTGAGTT
TGACCTCAGCAAAAATGggtTCCTTGAACTACCGGACAACATCAAAGGGA
TGAAATCCTTGGAACATTTCGACCTCAGTGTGAACCCGCTAGGAAGgcTA
CCAGATGGTTTTACTATGCTGTTGAATTTGACACATGTTTACTTGAATGA
TACTTTCCTGGACTTTTTGCCGGCCAATATTGGAAGAATGTCAAAATTGG
AAGTTCTGGAAGTCAGAGATAACCACTTGACCATGATCCCAAAATCCATG
AGCCGATTGCAGAGTCTGCGGAGACTCGACTTAGGAAATAATGAATTTAA
CGATATGCCTGAGGTAATAGGAACGTTTACCAATCTTGAAGAATTATGGC
TGGATggcaacaaaatcaaacaagTCCCTCCTGTAATT
Run BLAST on NCBI

transcript from alignment at sc0000768:92001..99032-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029746 ID=TCONS_00029746|Name=TCONS_00029746|organism=Clytia hemisphaerica|type=transcript|length=7032bp|location=Sequence derived from alignment at sc0000768:92001..99032- (Clytia hemisphaerica)
TCTAGAATATGCATAACATAGTATACACATGATAAACAAGGAGAAAAACA
AAACGAGGAAATAAAATAATTTTAGAAATCAATAATGGTGATGCCCACGA
CGTGATATATGCTTTCTGAATCCAGTGCGCTAGGATGCCCTTCAAATTCA
GTTTTTGCGGGAAGGCTGAAAAAGAGCTTTTCCATGTGTTGGATTACAGC
CACAAAAACTTGCTAAATGTACCAACAGAGATTTACGAACATGCTCAAGC
GCTAGAAGATCTTTATTTGGATGCCAATCAATTAAAGGATTTACCAAAGG
TAAAACATATTTTAAGGTTGTTTTTCACAGTATCTTTGTTTCAATGTTTA
CAAAAACTGTTGTGGAAATTGTTTTTTTCGAAGAACTACAGCTTGTCACT
AAAATGTAAAAATGTGGTTTCAGTGTGCTTAAAATTTGTATTTCAACAGG
CTTCATAAGGGCAAGTACCTTCACTGATAAGTCTCCACTGGTCCAACACA
GTGTGTTTTAAAATGTTGGATTTATGACATGATTTTAAGAAGAGCGGTAT
TAGAGGCCCAGTGTGTTGCCTAACTGTAAAAACTTTATAATAATTTTTTT
CTATGGTTATGAAATTCTGTTGAATGAAGGTACATTATATTTTATCAATC
AGTCATCAGGTTAATTAACATACCTCATTTAATTAGGTATCTAAACGAAA
ATTAAAACCTAAAGTTCATTTACACTGACCTATTAATTCTGTGTATAATT
ACTATCCTATTACTCAATATTAATAGAGTTTTGCAATAAGACTGTTAGCC
TCTCAAAAATTTTTGTGAGTTTTGGAAAGAAGGTCTTATTAATTAATCCA
AACTTGTGAGCGAAGCAGTTTTGCTATATTGTGCACGTACCTTTAACTTC
TATCCCAAGCGAAAACTTGCTATAAAATTTGCTATATAAATCACATCTTC
AAACCGATGATTTTATCAAAATGACCTTGAATGGTTTGGCTTGAAGCCAC
AAAAACTTTCTCGGTTTGGTAGCTAGGACTGCGAAAAATGCCGTTTTAAA
ATGGTGTACCCTAGCAGTAAACAGCAACAAAATTACCGGAAGCCGAAACA
CGGACTTGGAATCTGAACTCGTGAAGTTGATCAAATTACCGCGTGGGCAT
CTAAGCAATATAAGCAGTGGTTCTTCGGTTTTTAATGTTTATTTTGCTGT
TAAATGGAAAAAAAATAGTTTGAACGGTGACAGAAAGGATCTTCATCATC
CCTTGACTTTTAACAGCAAGTATCAAGTATCAAATAAGGTCAATCAATGA
GAGGTTTTTGCAAGTCGCGGGGCGGGAGGAGTGCTCTTTGAACGAAACTT
ACCTTGCAAAACCAAGTGGATATTCTATGATAAAGAAGTACGAAGGTAAT
CAAATTTGTCGAGTTTGTCAAGAAATAAATCAAAACTGCTGAAGAACCAA
CAAGCCATCTTTGTACATTTTTGTTTTTGTTTTATTTTTATGTTTTGTGA
TGATTTCGACGGACGATTCGTGATTCGAATAAAAATGTTCGATCGTTCGA
CAAATATCGTTCGATTTTATTAAGGCACCGTTTACACTAGAATAACTAGA
AGGAAAACAAAAGAGCGATGCTCGCAGGGCAGCGGCGGATGTTGTGCCGC
CGTGGATTATGAAATGTGTTCGGGCATTAAGGCTCTTACGACCCTGTCTC
TATAGCGGCTTTATTAGAAGAGGGATTTTTAGAGAGTCTCTTATTTTGCT
AGCAACTTGCGAATTGAGGTGGAGTCTTAACTTGTTATTTTAATTGGTTA
TCTGTTATTGAAACTTTTCCCTCATTTTAAAGAATATTAAAGAAATATTA
AACCCCAAACTTGATGGACCCTTTGTTATAATATCCCTATTTGATATAAT
TGAATGTTAAATGAAATTTTATGGGAAAAGAAAATATTTGCCTTATCTGA
ATTTCGTATCATGATGTAAAATGATCTTGCTGCTCAAAAATGAAATGAAA
TTTGATACCAGTGGCATTTTATTAAGAAAGATTTGGTCATTCAAGAGTAC
AATACGTCATACTTCCTTTAAAAAGAAACTTATGTTTTAAAAATAGAGTT
ACAGCTTAGAATGACCATTTGAAAAAATTCTTCAAATATTTAGCACCTAT
GAAATCTTAACAGCGTGGACCCCCTTTTGAGTGGACTGGTATTGAGTTTA
TTTGTAGAAAATATTTCTCGGTACAAATTTTAAGAATAAGGGGTATTAAG
ACAAAGCAATAAATTTCCTTTAAAATTGTTACCAGTCTTGTCTCGAACTG
AAAATTTCATTCATATTATTATAATATATATTATTACTATATAATTCATA
TTTTGATCTTTCAGGCCCTTTTCACTTTGCAACATTTGAGAACATTGAAC
ATCAGCGATAATGAAATCATTTCACTACCGTCAAACGTCTCCAATCTCAT
CCATCTTATTGAGTTTGACCTCAGCAAAAATGGTATGTAATATAAATAAA
TATTATCTTTTAAATGTTCTACATTCCATTTTATCTCCATACAGGGGGTA
GACAAACATTTCCAGGGGGTAATCTGAGAAGAATTTAGGGGGTATTCTCA
CATTTCCACAAATTTTATATTGGCTTAAAAAGGTTCGTAAACCCCATGCA
CGGATTTTTAATGGAACATTTTTGCAATTTCTTCTGTATCAACTCTAGAC
AATTTTAAGCCCATTAAATCTATTCTGTTGGCTGGTCAGAAGACAATTAT
ATATTGACTGAATTTACCTAGAGGCTAGACTTAAAAAATTCTTGGTTTGC
CGTCACCTGACCCTACATTTTGGGGATGGTTGGTCGGTCTGAAAATTTTT
TTATTTTGATCATTCATGGAATTTTTGTCTATATTTTGTAATTTTTGAAG
AAAAAAAAATTCTCTTCGTCGAAATAGCAATAAAAGTTTTTTGGTCGTCA
AGTTTTGAGAAGAGTTTTGGTTGGCTGACGGCAAACCAACATTTTTTTTT
AGTTCAGCCTGATTACGTTATACAAAATGAATGATAATTCAAAGGGTACT
GCTAACAAACACAGAAGCTCAACATACAACTTTACTCTTGACATATTTAC
TCTTGACATATTTACAGGGTTCCTTGAACTACCGGACAACATCAAAGGGA
TGAAATCCTTGGAACATTTCGACCTCAGTGTGAACCCGCTAGGAAGGTAA
AAACTTATTTCTTTAATGGACTACAAAAAAAATATTTAATTTCCTGAACA
ACAAAGTTTGTAAAAAATTCTCTCAATCGTATTTTTAAAAAGATGTTGTT
TTGTGTTAATGTTAGCCCTATATTGATATGATATGTGTTTAATTTTTACC
AATGCTTAATTTTTCTCCTCTTGAACATGAGCTATTATAGTCTAAAGTCC
TTACTTTGTAGAGGTGCTAACGAGGCGCTCATTGAAAGCTTCTTGAAAGT
TGCAAAAATGTGAAAATTGCAACTCAACCAAATGGAAATAAAAGCAAAAC
CATCTATTTTTCTTTTAAGGCTACCAGATGGTTTTACTATGCTGTTGAAT
TTNCAGTGGCATTTTATTAAGAAAGATTTGGTCATTCAAGAGTACAATAC
GTCATACTTCCTTTAAAAAGAAACTAATGTTTTAAAAATAGAGTTACAGC
TTAGAATGACCATTTGAAAAAATTCTTAAAATATTTAGCACCTATGAAAT
CTTAACAGCGTGGACCCCCTTTTGAGTGAGTTTATTTGTAGAAAATATTT
CTCGGTACAAATTTTAAGAATAAGGGGTATTAAGACAAAGCAATAAATTT
CCTTTAAAATTGTTACCAGTCTTGTCTCGAACTGAAAATTTCATTCATAT
TATTATAATATATATTATTACTATATAATTCATATTTTGATCTTTCAGGC
CCTTTTCACTTTGCAACATTTGAGAACATTGAACATCAGCGATAATGAAA
TCATTTCACTACCGTCAAACGTCTCCAATCTCATCCATCTTATTGAGTTT
GACCTCAGCAAAAATGGTATGTAATATAAATAAATATTATCTTTTAAATG
TTCTACATTCCATTTTATCTCCATACAGGGGGTAGACAAACATTTCCAGG
GGGTAATCTGAGAAGAATTTAGGGGGTATTCTCACATTTCCACAAATTTT
ATATTGGCTTTAAAAGGTTCGTAAACCCCATGCACGGATTTTTAATGGAA
CATTTTTGCAATTTCTTCTGTATCAACTCTAGACAATTTTAAGCCCATTA
AATCCATTCTGTTGGCTGGTCAGAAGACAATTATATATTGACTGAATTTA
CCTGAGGCTAGACTTAAAAAATTCTTGGTTTGCCGTCACCTCACCCTACA
TTTTGGAGATGGTTGGTCGGTCTGAAAATTTTTTTATTTTGATCATTCAT
GGAATTTTTGTCTATATTTTGTAATTTTTGAAGAAAAAAAAATTCTCTTC
GTCGAAATAGCAATAAAAGTTTTTTGGTCGTCAAGTTTTGAGAAGAGGTG
GTTTGCTGACGGCAAACCAACATTTTTTTTAGTTCAGCCTGATTACGTTA
TACAAAATGAATGATAATTCAAAGGGTACTGCTAACAAACACAGAAGCTC
AACATACAACTTTACTCTTGACATATTTACTCTTGACATATTTACAGGGT
TCCTTGAACTACCGGACAACATCAAAGGGATGAAATCCTTGGAACATTTC
GACCTCAGTGTGAACCCGCTAGGAAGGTAAAAACTTATTTCTTTAATGGA
CTACAAAAAAAATATTTAATTTCCTGAACAACAAAGTTTGTAAAAAATTC
TCTCAATCGTATTTTTAAAAAGATGTTGTTTTGTGTTAATGTTAGCCCTA
TATTGATATGATATGTGTTTAATTTTTACCAATGCTTAATTTTTCTCCTC
TTGAACATGAGCTATTATAGTCTAAAGTCCTTACTTTGTAGAGGTGCTAA
CGAGGCGCTCATTGAAAGCTTCTTGAAAGTTGCAAAAATGTGAAAATTGC
AACTCAACCAAATGGAAATAAAAGCAAAACCATCTATTTTTCTTTTAAGG
CTACCAGATGGTTTTACTATGCTGTTGAATTTGACACATGTTTACTTGAA
TGATACTTTCCTGGACTTTTTGCCGGCCAATATTGGAAGAATGTCAAAAT
TGGAAGTTCTGGAAGTCAGAGATAACCACTTGACCATGATCCCAAAGTAA
GAGAACTATGGTTTTCCCTGATTCTTCAATAAGAAGAAAGAAATCTTTAC
TCAACACCATCAGTATTTATCAGTATTTTTCCTTGGCATTCTAAATTCTT
ATAACAAATACACTGTTGTACTCTATAAATTCTAGTAACTGAATATATAA
TTTTTACGTTTTTGTAAAGCATTAAGGAATAACATGTTATCATTGTTTTC
TTTTAGATCCATGAGCCGATTGCAGAGTCTGCGGAGACTTGACTTAGGAA
ATAATGAATTTAACGATATGGTATGTCTTTAAACTTCTTTTGTTCAAAAT
CTATCACTTAAGGTCCAAGAAATAAACTGAAATAAATTCGTTCTTTTGCA
ATTGGGTAACCGAATTCCTTGATTATTTTTGCGTTTAGTTTTAAAATCTG
GTTTAATCCTTGTATATTCTTTTCTTTTTCTTCGTTTACAGCCTGAGGTA
ATAGGAACGTTTACCAATCTTGAAGAATTATGGCTGGATGGCAACAAAAT
CAAACAAGTCCCTCCTGTAATTATTGAAAATTACTTTTAAACTCTTTTAC
TTGTTCTGCTTTTTTTTTTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTAGTTCAGCCT
GATTACGTTATACAAAATGAATGATAATTCAAAGGGTACTGCTAACAAAC
ACAGAAGCTCAACATACAACTTTACTCTTGACATATTTACTCTTGACATA
TTTACAGGGTTCCTTGAACTACCGGACAACATCAAAGGGATGAAATCCTT
GGAACATTTCGACCTCAGTGTGAACCCGCTAGGAAGGTAAAAACCTATTT
CTTTAATGGACTACAAAAAAAATATTTAATTTCCTGAACAACAAAGTTTG
TAAAAAATTCTCTCAATCGTATTTTTAAAAAGATGTTGTTTTGTGTTAAT
GTTAGCCCTATATTGATATGATATGTGTTTAATTTTTACCAATGCTTAAT
TTTTCTCCTCTTGAACATGAGCTATTATAGTCTAAAGTCCTTACTTTGTA
GAGGTGCTAACGAGGCGCTCATTGAAAGCTTCTTGAAAGTTGCAAAAATG
TGAAAATTGCAACTCAACCAAATGGAAATAAAAGCAAAACCATCTATTTT
TCTTTTAAGGCTACCAGATGGTTTTACTATGCTGTTGAATTTGACACATG
TTTACTTGAATGATACTTTCCTGGACTTTTTGCCGGCCAATATTGGAAGA
ATGTCAAAATTGGAAGTTCTGGAAGTCAGAGATAACCACTTGACCATGAT
CCCAAAGTAAGAGAACTATGGTTTTCCCTGATTCTTCAATAAGAAGAAAG
AAATCTTTACTCAACACCATCAGTATTTATCAGTATTTTTCCTTGGCATT
CTAAATTCTTATGACAAATACACTGTTGTACTCTATAAATTCTAGTAACT
GAATATATAATTTTTACGTTTTTGTAAAGCATTAAGGAATAACATGTTAT
CATTGTTTTCTTTTAGATCCATGAGCCGATTGCAGAGTCTGCGGAGACTC
GACTTAGGAAATAATGAATTTAACGATATGGTATGTCTTTAAACTTCTTT
TGTTCAAAATCTATCACTTAAGGTTCAAGAAATAAACTAAAATAAATTCG
TTCTTTTGCAGTTGGGTAACCGAATTCCTTGATTATTTTTGCGTTTAGTT
TTAAAATCTGGTTTAATCCTTGTATATTCTTTTCTTTTTCTTCGTTTATA
GCCTGAGGTAATAGGAACGTTTACCAATCTTGAAGAATTATGGCTGGATG
GCAACAAAATCAAACAAGTCCCTCCTGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016993XLOC_016993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029746-exon-sc0000768-1575043694:98734..99032TCONS_00029746-exon-sc0000768-1575043694:98734..99032Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1575043694:95017..95134TCONS_00029746-exon-sc0000768-1575043694:95017..95134Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1575043694:92997..93075TCONS_00029746-exon-sc0000768-1575043694:92997..93075Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1575043694:92527..92673TCONS_00029746-exon-sc0000768-1575043694:92527..92673Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1575043694:92253..92316TCONS_00029746-exon-sc0000768-1575043694:92253..92316Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1575043694:92001..92081TCONS_00029746-exon-sc0000768-1575043694:92001..92081Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1510915933:98734..99032TCONS_00029746-exon-sc0000768-1510915933:98734..99032Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1510915933:95017..95134TCONS_00029746-exon-sc0000768-1510915933:95017..95134Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1510915933:92997..93075TCONS_00029746-exon-sc0000768-1510915933:92997..93075Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1510915933:92527..92673TCONS_00029746-exon-sc0000768-1510915933:92527..92673Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1510915933:92253..92316TCONS_00029746-exon-sc0000768-1510915933:92253..92316Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1510915933:92001..92081TCONS_00029746-exon-sc0000768-1510915933:92001..92081Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1491911889:98734..99032TCONS_00029746-exon-sc0000768-1491911889:98734..99032Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1491911889:95017..95134TCONS_00029746-exon-sc0000768-1491911889:95017..95134Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1491911889:92997..93075TCONS_00029746-exon-sc0000768-1491911889:92997..93075Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1491911889:92527..92673TCONS_00029746-exon-sc0000768-1491911889:92527..92673Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1491911889:92253..92316TCONS_00029746-exon-sc0000768-1491911889:92253..92316Clytia hemisphaericaexon
TCONS_00029746-exon-sc0000768-1491911889:92001..92081TCONS_00029746-exon-sc0000768-1491911889:92001..92081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000768supercontigsc0000768:92001..99032 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365067	0.489058	0.457073	0.414095	9.5314	6.42812	6.77017	6.58467	2.86576	5.27205	3.44781	2.9418	3.03982	2.17104	1.73539	4.50902	4.26483	4.00856	2.75973	3.459	3.15452	8.45274	1.46787	1.85259	3.3437	3.27851	3.62714	3.08613	4.21111	9.28412
Blast
[Close]
BLAST of TCONS_00029746 vs. Swiss-Prot (Human)
Match: LRRC7 (Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 4.242e-72
Identity = 114/211 (54.03%), Postives = 155/211 (73.46%), Query Frame = 3 
Query:  156 CGKAEKELFHVLDYSHKNLLNVPTEIYEHAQALEDLYLDANQLKDLPKALFTLQHLRTLNISDNEIISLPSNVSNLIHLIEFDLSKNGFLELPDNIKGMKSLEHFDLSVNPLGRLPDGFTMLLNLTHVYLNDTFLDFLPANIGRMSKLEVLEVRDNHLTMIPKSMSRLQSLRRLDLGNNEFNDMPEVIGTFTNLEELWLDGNKIKQVPPVI 788
            C + E+E+  VLDYSH +L  VP E++   + LE+LYLDANQ+++LPK LF  Q LR L+I DN++ +LP+ +++L++L E D+SKNG  E P+NIK  K L   + SVNP+ +LPDGFT LLNLT +YLND FL+FLPAN GR+ KL +LE+R+NHL  +PKSM +L  L RLDLGNNEF ++PEV+    NL ELW+D N ++ +P  I
Sbjct:   16 CFRGEEEIISVLDYSHCSLQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSNLPTTIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLPDGFTQLLNLTQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFGELPEVLDQIQNLRELWMDNNALQVLPGSI 226

HSP 2 Score: 95.5153 bits (236), Expect = 1.192e-21
Identity = 66/200 (33.00%), Postives = 108/200 (54.00%), Query Frame = 3 
Query:  180 FHVLDYSHKNLLNVPTEIYEHAQALEDLYLDANQLKDLPKALFTLQHLRTLNISDNEIISLPSNVSNLIHLIEFDLSKNGFLELPDNIKGMKSLEHFDLSVNPLGRLPDGFTMLLNLTHVYLNDTFLDFLPANIGRMSKLEVLEVRDNHLTMIPKSMSRLQSLRRLDLGNNEFNDMPEVIGTFTNLEELWLDGNKIKQVP 779
              +L+    +L  +P  +++ AQ LE L L  N+  +LP+ L  +Q+LR L + +N +  LP ++  L  L+  D+SKN    +  +I G ++LE   LS N L +LPD   +L  LT + ++D  L  LP  IG +S LE  +   N L  +P ++  L SLR L +  N   ++P  IG+  N+  + L  NK++ +P
Sbjct:  163 LRILELRENHLKTLPKSMHKLAQ-LERLDLGNNEFGELPEVLDQIQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLP 361

HSP 3 Score: 93.5893 bits (231), Expect = 5.271e-21
Identity = 64/169 (37.87%), Postives = 90/169 (53.25%), Query Frame = 3 
Query:  189 LDYSHKNLLNVPTEIYEHAQALEDLYLDANQLKDLPKALFTLQHLRTLNISDNEIISLPSNVSNLIHLIEFDLSKNGFLELPDNIKGMKSLEHFDLSVNPLGRLPDGFTMLLNLTHVYLNDTFLDFLPANIGRMSKLEVLEVRDNHLTMIPKSMSRLQSLRRLDLGNNE 695
            LD S   +  V  +I    +ALEDL L +N L+ LP ++  L+ L TL + DN++  LP+ + NL  L EFD S N    LP  I  + SL    +  N L  LP       N+T + L    L+FLP  IG+M KL VL + DN L  +P S ++L+ L  L L +N+
Sbjct:  235 LDMSKNRIETVDMDI-SGCEALEDLLLSSNMLQQLPDSIGLLKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPSTIGYLHSLRTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKNLPFSFTKLKELAALWLSDNQ 402
The following BLAST results are available for this feature:
BLAST of TCONS_00029746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRC74.242e-7254.03Leucine-rich repeat-containing protein 7 OS=Homo s... [more]
back to top