TCONS_00029734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029734
Unique NameTCONS_00029734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029734 ID=TCONS_00029734|Name=TCONS_00029734|organism=Clytia hemisphaerica|type=transcript|length=1279bp
TGCCAAAAATAATCTGCTTATGACTTTTTAGGCTAGAAAAGGAACTGATG
AAGAAAGCTTGGCAAAGAGTAGGCGCTGTACACACTGACAAAAATATGAT
TTCTCCCCTGATGGTACCGCTTGTTATCATTGGAACAAAATATGATCTGT
TTCAGgaATTGAGTACCAGTAAGAAAGAGATGGTATCTAAAGCGTTGCGT
TTTGTCAACCATTATCACGGTGGTATGATACAGtattttagtacAAAAGC
AGAAGGGTTGAGTTCACGTACCAAGTCAGTCTTCAGTCACGTGGCTTTTA
AAACATCTCTAAGtaaaACAACGTCTATTGACCCTGGAAAGCCATTGATC
GTCCCTTTTGGTGCCGATAGCCTTGAGCAAGTTGgagcaCCACCTGTCTC
TTCTGATCGAATGATGAAAAATCGTGGAAAttcgCCGTATGAACTTTGGC
AAAATGCATATGAAAGTGTCTTCCCTTCTCAGAATTCTGAAGACACTGAG
ATTCAAACTAATCCAACTTTAGACAAAAATTTTGCCGATGAAACAATCGA
TAACGCACGAAAACAAAAAGACCAGGAATTGGAACGTTATCGAAAGCTGA
GTGAACGAAAatcgaaagaaaataaattgaaCGCAAGTGCTGGTGTAAGC
AGTtccaaaaagaagcaaaaatgaaaaattgaaaataaccaaaaaaacAT
TGGAACTctgtcaatatattttaaagatCATCATGCATTTTTGGTGGTGT
TGACAACAAGGCATTTTAGGCGAATTATTTGTTTCATTGCAAACTTTTAA
CGAGAACTTTGCGCGAGGCTCACTCGAATCCACTCGTGCTCTTTTTTTAC
GAAGGACTTGTGAATTGTTTTTTTCCTAAACGATACCCATGACACATACG
TGAGCACGATTGAACACAGTCATCGTATTCTTTATAAACCGTCTATAATA
ATTAATAGTTTTTATTTGTATATTTATAATTGGgtacaattttttaattt
gtttgtaGATATTACAATGTTCACTACCTGTATAGAACACCTATTCCCTT
TCTATTTAGGCTGCTGGTATCCactaacagATTCATGCTCCTTATTGAtt
attaagcagacctatactgcCTGGGgtgcgattcagactactttTCTATT
CATTTACAGTAGACTTCCGGTTATTGGAAGCTCCAAAGTGATAAGGATTT
ACTTCGAATAGCCGGGAGTTCGAATAGCTGTTCTCACTCGACGATCTCCc
gataagaaaaattcaaataatagTTTGCC
Run BLAST on NCBI

protein sequence of TCONS_00029734-protein

>TCONS_00029734-protein ID=TCONS_00029734-protein|Name=TCONS_00029734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MKKAWQRVGAVHTDKNMISPLMVPLVIIGTKYDLFQELSTSKKEMVSKAL
RFVNHYHGGMIQYFSTKAEGLSSRTKSVFSHVAFKTSLSKTTSIDPGKPL
IVPFGADSLEQVGAPPVSSDRMMKNRGNSPYELWQNAYESVFPSQNSEDT
EIQTNPTLDKNFADETIDNARKQKDQELERYRKLSERKSKENKLNASAGV
SSSKKKQK
Run BLAST on NCBI

transcript from alignment at sc0000768:120362..132184+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029734 ID=TCONS_00029734|Name=TCONS_00029734|organism=Clytia hemisphaerica|type=transcript|length=11823bp|location=Sequence derived from alignment at sc0000768:120362..132184+ (Clytia hemisphaerica)
TGCCAAAAATAATCTGCTTATGACTTTTTAGGCTAGAAAAGGAACTGATG
AAGAAAGCTTGGCAAAGAGTAGGCGCTGTACACACTgtgagaattttatt
ttttagggcTGTccatttgttttatttgttttgtttgttttgcttTTAGA
TAGGCAGGATTCTAAAGTCCTTTAAGCGGTTGTATTTCAAAGGTCGGGGG
GTGAATCTCCAGCTGGGTCATACAAAGAACTTTGTATTTAttacaaaaat
ggtacttgatgcctctcttcTTAATGCTCaacaattaagagaaggatcaa
ggctAAGCGGATCAattcagggagaaagagtggcgtccTCCCCTACGTTA
GGTTCTATATAGAtttcgaaagaggagccttcgagTCACCTCCGACTGCG
ATTGCAGACTTGACTAAATTCTAGAAACtgcaaatatttttgaatagaTT
TTATAAAATGGTTTTCATCATTAAAACACTTGGGTTTACCAGTCTTTTCT
TTACAATATTCCAGGACAAAAATATGATTTCTCCCCTGATGGTACCGCTT
GTTATCATTGGAACAAAATATGATCTGTTTCAGGTAAttgtaattttaaa
ttttaatcacGAGAGTTTTTTAACTTAATTTTAGAGTAAAAATCTGTTTT
AAGGGCTGTTTCCTAAAGTGATTGTCCATGGCTTTTTTATGGTAAAATGA
CTCTTGTATATATAGTCGAGCAATCGTCCTCATTTTTTAAGGTTCAAAAC
GCGCGTAACTGATGTTTCTTCCTTTGCCTTAAAAGCATGTACAATCTTTT
CATGAACACTGTGAACTGCGATAAACTTATCAAAGATGGCGCGTTATTTT
GCTACAGCTAGGGACGAAGAAGCTCTATCTAGTATTTTTATTAGGGAATG
CATATATTCTGTGgttatattattttatttattaggaATTGAGTACCAGT
AAGAAAGAGATGGTATCTAAAGCGTTGCGTTTTGTCAACCATTATCACGG
TGGTATGATACAGGTACTGATACACTGATACACAACAAAGCCAGGTCTCA
TTGACCCAGTGCGAATTTTTTAGGcgttacagataaaaaaatagtTAAAT
ACTAGTGAGGaaggtaaattttctttttaacgGGTGAAAATCTTAAACTC
TACTATTTACAGCACAGATATATTCGACGGGAATTCTCAAAAAGAGAGTG
ACTTTTGTATGGGTATGAGAGATTTTTGATGAGGATGCAATTCCGGGTAA
TTTTCTCACCGGCGACGATTTTTAGGCTAATTCTTTCAGTTTGGAGGGGG
TCTCACCGGGTCTAAGGCACGAGAGTATCGATGTAAAGTTAAACACCTAA
TCCTTGCTCAAACTCTGAGATTTGTAgtcaaaaatttagtttttaatgTG
GACGAGACTGAGCTGTTCTTCTAGCACATGCTTTTCAAtgctttccaaat
ctttgtttttttagtattttagtacAAAAGCAGAAGGGTTGAGTTCACGT
ACCAAGTCAGTCTTCAGTCACGTGGCTTTTAAAACATCTCTAAGGTAACT
TTCTTCTCTTTAACGTCTATCCAGGATAAGTTTGTAATCTTTTTTACTTT
GATGTTGAAACTAGGTCAGAGAGTACAGACTTATTTCCTTAAGAATAGTT
TTCACATAAGGTTTCTATTAATCCTCTAACAAACAGATTTCTTATAAGAA
GTATAGGTTTGAGAACTGGAATGTTTCCCACGTGTTAAGCAAAAAAGATC
ACACTCCTTCTTAATCAATTTAGAAtcagattttcgttttttttgttgaa
acttttggttattatttaatttttaatttctttttagtaaaACAACGTCT
ATTGACCCTGGAAAGCCATTGATCGTCCCTTTTGGTGCCGATAGCCTTGA
GCAAGTTGGTAAGGACCATTATTTTCCATTCtaaagaactttttttttga
attgaatttgagACGAGCATTCATGTGATTGGCCATCTGTTGGACAGCAA
ATTTGACCAGTTTGTCTTCttattgatttcaaaatttctcatcTGTTTAT
GAGTCTTCCCAACTGgcacaaaactttaaaacatcGTTATCTATATATGC
CATGGACGTTAGATGAATGTTTACTAAAAGTATAGTTGTTTCTTTACtct
aaataagtttgcgtttatTGACGCAttgatattcatattggaagtttatc
gtggctttgatcacgagatttacgtttggctacgtttcgagagattcttc
tcccatcatcgggcaatgtGGAGTGATGTTTTCCCCACTATTTGTACCTT
TTGTTTACCCATATTTTCCATCGTCTCTTTACACCACGGGTCTCATTTTC
TGGTTTGCAGATCGAAATCTGGTACCCAGAGCCACTGGCATCTtattgat
tttactgatggatgtGAAGGAATTGTACTCCTTTCGTAAGCACCATGAGA
ATAATAAAACAGCGAACTAAATGACCGAGTCCACGTTTGGTATTACTTCC
TACTTACGTTACATTCCTTTTggctatttttttttcaggagcaCCACCTG
TCTCTTCTGATCGAATGATGAAAAATCGTGGAAAGTAAGAACGTGATTAA
TCTTTTGTTGTAAATTAAGTTATAGCAACCCATCCACTGAGTTTTATATA
AACCTCGACGGTAGTTTTTCAACCCCGAccaaccaaaatctttgatcgga
gttaaGTCATGAAAAACCTCTACTACTACAATTCTGATATATTTCTCATA
NatctttgatcggagttaaGTCTAACCTCTACTACTACAATTCTGATATA
TTTCTCATGTGAAGAGCAATTATTCTGTTCTATTGAAaatctaatacacc
ttttcgaccgtagctgctaattgccgcgcgggcattttttaccaccctaa
aaccgtcctagtctttttttcgcgcctgaagacaatagaaaaaagtgtaa
gaaaaggattggatcgagtttagggtgataaaaaatgcccgcgcggcaat
tggcggctacggtcgaaaaggtgtattagcgAGAATCAACTGTGACTATA
GAGATGGTTGTTCCCCAGCTTCTTTATGGTGTTCAATttgaatcttttct
tttttagttcgCCGTATGAACTTTGGCAAAATGCATATGAAAGTGTCTTC
CCTTCTCAGGTTGGTttgattcaaattgaaatttttattgacaGCGTTAT
TCAAATACGTTGCAGTGGCGGATTTAATAgggtttcaaaatctttcaaag
ggTTTCAAAATCTTCGACGGAGAGTTTTGCCCATTAATCCTTATAACGAA
ATGAAGTTTAAATCTCCTCAGATCCGCTGTTGcgttagcgagcacctcac
taaaaaccgggatttttcatcccatttcttagtgagttccactttgatga
ttttcgaaaaatagaagcctttcaagtgctttgacgcaaattcgatattt
tcgctactgcaagagcttcaaaagtttaaagtgacgtcaagaaATCGAAT
ctttggagcccgaaaacctggactcaaaacattcgaaaaagtcgcaaagt
ggaatagacgttactgcGTAGAAAAATGCCgcgacgtctagtataggcta
ccgTTGCGTTGATTCTTTTAGCGTAGGAGtattaaaacacccctgtctcg
ctgAAACAGTGATAGCTTCAGTTAAGTGTGTGAGCAAGCGTTTTTGTATT
TGCCCCGtggcaggggcttttgttgcttcacgtagtgAATAATATTCAGA
TTCAGATTCAGATTCAGATTCAGATTCAgattcatgttgtttcttccgat
tctgagcgggccgccgcggttgattaaaaaatgttcgcgcgCACCTAATA
TTATATCTCTTTTGTTGCTACTTggtactttataagaaaaacaataactc
ttgattgaaggccatatacctttcggtaattagttcttagaaagtaaaca
aaggatggcgaaaaaattgtgcatatttatttttattataagcatctact
ttataagaatcaaataaatatctcttgattgaaggcaatatgcctttcgg
taattagttcttactgaaaagtaaacaagggacggcacacaatatgagca
tatttatttttattataagcatctactttataagaatcaaatcaataact
cttgattgaaggcaatatgccttttggtaattagttcttacaaagtaaac
aagggacggcacacaatatgagcatatttatttttattataagcatctac
tttataagaatcaaatcaataactttcgATTGAatgcaatatgcctttcg
gtaattagttctcacaaagtaaacaaaggatggcgaaaaagatgaacata
cttatttttattgtaagcattttctttataagaatcaaatcaacatctct
tgattgaaggcaacatgcctttcggtaattagttcttacaaagtaaataa
gagacggcacacaatatgagcatacttattaatttcgcctagcgaaagta
ttacaatcgTCTTTcgcggcggtgtcatcggaaaaaaaattagaaaacga
aagtactcgatacggtgggcGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNtatacccttcggtaattagttct
tacaaggtaaacaagggatggcacacaatatgagcatatttatttttctt
ataagcatatactttataagaatgaaataaataactcttgatagactgtg
atatacctttcggtaattagttcttacaaggtaaacaagggatggcacac
aatatgagcatatttatttttattataagcatctactttatgagaattaa
atcaataactcttgattgaaggcaatatatctttcggtaattagttctta
caaagtaaacaagggacggcacataatatgagcatatttatttttattat
aagcatctactttatgagaattaaatcaataactcttgattgaaggcaat
atatctttcggtaattagttcttacaaagtaaacaagggacggcacataa
tatgagcatatttatttttattataagcatctactttatgagaattaaat
caataactcttgattgaaggcaatatatctttcggtaattagttcttaca
aagtaaacaagggacggcacataatatgagcatatttatttttattataa
gcatctactttatgagaattaaatcaataactcttgattgaaggcaatat
atctttcggtaattagttcttacaaagtaaacaagggacggcacataata
tgagcatatttatttttattataagcatctactttatgagaattaaatca
ataactcttgattgaaggcaatatatctttcggtaattagttcttacaaa
gtaaacaagggacggcacataatatgagcatatttatttttattataagc
atctactttatgagaattaaatcaataactcttgattgaaggcaatatat
ctttcggtaattagttcttacaaagtaaacaagggacggcacataatatg
agcatatttatttttattataagcatctactttataagaatcaaatcaat
aactcttgattgaaggcaatatgcctttcggtaattagttctcacaaagt
aaacaagggacggcacacaatatgagcatatttatttttattataagcat
ctactttatgagaattaaatcaataactcttgattgaaggcaatatatct
ttcggtaattagtccttacaaagtaaacaagggacggcacacaatatgag
catatttatttttattataagcatctactttataagaaaaacaataactc
ttgattgaaggcaatatatctttcggtaattagttcttacaaagtaaaca
agagacggcacacaatatgagcatacttatttttattgtaagcattttct
ttataagaatcaaataaatatctcttgattgaaggcaacatgcctttcgg
taattagttcttacaaagtaaacaagggacggcacacaatatgagcatat
ttatttttattataagcatctactttataagaatcaaatcaataactctt
gattgaaggcaatatgcctttcggtaattagttctcacaaaaaagtaaac
aagggacggcacacaatatgagcatatttatttttattataagtgtcaac
tttataagaatcaaatcaataactttcgattgaaggcaatatgcctttcg
gtaattagttctctcaaagtaaacaaaggatggcgaaaaagatgaacata
tttatttttattataagcatccactttataagaatcaaatcaataacttt
cgattgaaggcaatatgcctttcggtaattagttctcacaaagtaaacaa
aggatggcgaaaaagatgaacatacttatttttattgtaagcattttctt
tataagaatcaaatcaatatctcttgattgaaggcaacatgcctttcggt
aattagttcttacaaagtaaacaagggacgccacacaatatgagcatatt
tatttttattataagcacctactttataagaatcaaattaataactcttg
attgaaggtaatatgcctttcggtaattagttctcacaaagtaaacaaag
tatggcgaaaaagatgaacatatttatttttattataagcatctacttta
taagaatcaaatcaatatctcttgattgaaggcaatatatctttcggtaa
ttagttctcacaaagtaaacaaaggatggcgaaacaGATGAGCATAttga
tttttattataagtgtctactttataagaatcaaatcaatttcagaattt
ttggtgTTTCcactgtgataacatgtgagcgataacttctctctttgaga
tgtgagcgaccgtctatcgcatgtcatctcaaaagtaaagtttacTTAGG
AATATTTCGAAAGAAAGGTCTGCagggcattcttagcgacagctacttgc
tagtttaaTACTTGGTAGGAATTTGGGTAGAAATATGGTGCTTTTTCATG
TCATAATCAAGCATTCCCTATAAGTTTAGCAAGATATACATACCTTTTTA
TGGTAATTTAATTTAGCGGTTGAAGGgtatttttgaccaaaaacactttt
tatttGGAAAACTTTGGTAGGAACTGGAATTTGGTggatcagaggaatgt
aaagagatggaaaaacagcttcttgaaaacaatggaaaaacggctcNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctagcgattctactgat
ataaccgcattatgaccgcaccataatatggaaagctagagctcgagaaa
attataacttcatcttgattttactcgactactgacagttttacaagaac
caatttaatatcattgcgtaaagaatttcttttgctatacattggtaaaa
atgttgctccttattcttaaaaattgaactagtaatcggcaaaaaaggaa
aaacaaattttcatttttattgtcaaatcatgtagaaaccgtccaatttg
tatggcgagccgtcttttctggactttcatttaatgacctaatcaacgtt
tttacaatagaattttcaatagaagtgatcgttgaactttgagtaatcag
aaaagctgtttttccatctctttacattcctctgggtGGATCTCCGCCAA
ATTTATTTCTGCCAAACCTTCTTCCTTTGAAGGTATCACATTATGTGCTG
TATCTGACTTTTCTAAAGTGGAAaataaatgatatttttattgCTTCTTT
TTGTCACAGAATTCTGAAGACACTGAGATTCAAACTAATCCAACTTTAGA
CAAAAATTTTGCCGATGAAACAATCGATAACGCACGAAAACAAAAAGACC
AGGTAAAGATACAAAGCTATGTAAAAAATGCACGAAATGAAGTCATTCTA
TTGGTTTAAAACTGAATTATCTACACAATTGACCAATGGAATAGCACCTC
GGGTCTCGAGATTACCTCACtcgaaaatgttatattttttttttcatgca
tATAACTTTTCTAGTTTCAGAAATAAAGCTACTTAAAGAATATTGTTTTC
ATGAGATACAAAGCATGCGCGCCTTTTGTGCTGACAATGAATAAGTTGTG
CTCATTCGGTTAAGAAAGGAATGAAAGCATGTTCAATAATTTCTGAGCTA
ATTCACAtgtttaagttttttttccaGATTCGTTTCGTTAAACTTCATTG
CTACTCTTTTAGGAATTGGAACGTTATCGAAAGCTGAGTGAACGAAAatc
gaaagaaaataaattgaaCGCAAGTGCTGGTGTAAGCAGTtccaaaaaga
agcaaaaatgaaaaattgaaaataaccaaaaaaacATTGGAACTctgtca
atatattttaaagatCATCATGCATTTTTGGTGGTGTTGACAACAAGGCA
TTTTAGGCGAATTATTTGTTTCATTGCAAACTTTTAACGAGAACTTTGCG
CGAGGCTCACTCGAATCCACTCGTGCTCTTTTTTTACGAAGGACTTGTGA
ATTGTTTTTTTCCTAAACGATACCCATGACACATACGTGAGCACGATTGA
ACACAGTCATCGTATTCTTTATAAACCGTCTATAATAATTAATAGTTTTT
ATTTGTATATTTATAATTGGgtacaattttttaatttgtttgtaGATATT
ACAATGTTCACTACCTGTATAGAACACCTATTCCCTTTCTATTTAGGCTG
CTGGTATCCactaacatgtttttttttataagcaagtgtctgtccctatg
tcaggctcgcattatgcttagtattctattgttctcaaacaatagagcca
ttgtttgggtaccaaaaactgagcctgcatatgcttataaatgttatgct
tataaaagaaaaaacatgtaacagATTCATGCTCCTTATTGAttattaag
cagacctatactgcCTGGGgtgcgattcagactactttTCTATTCATTTA
CAGTAGACTTCCGGTTATTGGAAGCTCCAAAGTGATAAGGATTTACTTCG
AATAGCCGGGAGTTCGAATAGCTGTTCTCACTCGACGATCTCCcgataag
aaaaattcaaataatagTTTGCC

Coding sequence (CDS) from alignment at sc0000768:120362..132184+

>TCONS_00029734 ID=TCONS_00029734|Name=TCONS_00029734|organism=Clytia hemisphaerica|type=CDS|length=5643bp|location=Sequence derived from alignment at sc0000768:120362..132184+ (Clytia hemisphaerica)
ATGAAGAAAGCTTGGCAAAGAGTAGGCGCTGTACACACTGACAAAAATAT
GATTTCTCCCCTGATGGTACCGCTTGTTATCATTGGAACAAAATATGATC
TGTTTCAGgaATTGAGTACCAGTAAGAAAGAGATGGTATCTAAAGCGTTG
CGTTTTGTCAACCATTATCACGGTGGTATGATACAGtattttagtacAAA
AGCAGAAGGGTTGAGTTCACGTACCAAGTCAGTCTTCAGTCACGTGGCTT
TTAAAACATCTCTAAGtaaaACAACGTCTATTGACCCTGGAAAGCCATTG
ATCGTCCCTTTTGGTGCCGATAGCCTTGAGCAAGTTGgagcaCCACCTGT
CTCTTCTGATCGAATGATGAAAAATCGTGGAAAttcgCCGTATGAACTTT
GGCAAAATGCATATGAAAGTGTCTTCCCTTCTCAGAATTCTGAAGACACT
GAGATTCAAACTAATCCAACTTTAGACAAAAATTTTGCCGATGAAACAAT
CGATAACGCACGAAAACAAAAAGACCAGGAATTGGAACGTTATCGAAAGC
TGAGTGAACGAAAatcgaaagaaaataaattgaaCGCAAGTGCTGGTGTA
AGCAGTtccaaaaagaagcaaaaatgaATGAAGAAAGCTTGGCAAAGAGT
AGGCGCTGTACACACTGACAAAAATATGATTTCTCCCCTGATGGTACCGC
TTGTTATCATTGGAACAAAATATGATCTGTTTCAGgaATTGAGTACCAGT
AAGAAAGAGATGGTATCTAAAGCGTTGCGTTTTGTCAACCATTATCACGG
TGGTATGATACAGtattttagtacAAAAGCAGAAGGGTTGAGTTCACGTA
CCAAGTCAGTCTTCAGTCACGTGGCTTTTAAAACATCTCTAAGtaaaACA
ACGTCTATTGACCCTGGAAAGCCATTGATCGTCCCTTTTGGTGCCGATAG
CCTTGAGCAAGTTGgagcaCCACCTGTCTCTTCTGATCGAATGATGAAAA
ATCGTGGAAAttcgCCGTATGAACTTTGGCAAAATGCATATGAAAGTGTC
TTCCCTTCTCAGAATTCTGAAGACACTGAGATTCAAACTAATCCAACTTT
AGACAAAAATTTTGCCGATGAAACAATCGATAACGCACGAAAACAAAAAG
ACCAGGAATTGGAACGTTATCGAAAGCTGAGTGAACGAAAatcgaaagaa
aataaattgaaCGCAAGTGCTGGTGTAAGCAGTtccaaaaagaagcaaaa
atgaATGAAGAAAGCTTGGCAAAGAGTAGGCGCTGTACACACTGACAAAA
ATATGATTTCTCCCCTGATGGTACCGCTTGTTATCATTGGAACAAAATAT
GATCTGTTTCAGgaATTGAGTACCAGTAAGAAAGAGATGGTATCTAAAGC
GTTGCGTTTTGTCAACCATTATCACGGTGGTATGATACAGtattttagta
cAAAAGCAGAAGGGTTGAGTTCACGTACCAAGTCAGTCTTCAGTCACGTG
GCTTTTAAAACATCTCTAAGtaaaACAACGTCTATTGACCCTGGAAAGCC
ATTGATCGTCCCTTTTGGTGCCGATAGCCTTGAGCAAGTTGgagcaCCAC
CTGTCTCTTCTGATCGAATGATGAAAAATCGTGGAAAttcgCCGTATGAA
CTTTGGCAAAATGCATATGAAAGTGTCTTCCCTTCTCAGAATTCTGAAGA
CACTGAGATTCAAACTAATCCAACTTTAGACAAAAATTTTGCCGATGAAA
CAATCGATAACGCACGAAAACAAAAAGACCAGGAATTGGAACGTTATCGA
AAGCTGAGTGAACGAAAatcgaaagaaaataaattgaaCGCAAGTGCTGG
TGTAAGCAGTtccaaaaagaagcaaaaatgaATGAAGAAAGCTTGGCAAA
GAGTAGGCGCTGTACACACTGACAAAAATATGATTTCTCCCCTGATGGTA
CCGCTTGTTATCATTGGAACAAAATATGATCTGTTTCAGgaATTGAGTAC
CAGTAAGAAAGAGATGGTATCTAAAGCGTTGCGTTTTGTCAACCATTATC
ACGGTGGTATGATACAGtattttagtacAAAAGCAGAAGGGTTGAGTTCA
CGTACCAAGTCAGTCTTCAGTCACGTGGCTTTTAAAACATCTCTAAGtaa
aACAACGTCTATTGACCCTGGAAAGCCATTGATCGTCCCTTTTGGTGCCG
ATAGCCTTGAGCAAGTTGgagcaCCACCTGTCTCTTCTGATCGAATGATG
AAAAATCGTGGAAAttcgCCGTATGAACTTTGGCAAAATGCATATGAAAG
TGTCTTCCCTTCTCAGAATTCTGAAGACACTGAGATTCAAACTAATCCAA
CTTTAGACAAAAATTTTGCCGATGAAACAATCGATAACGCACGAAAACAA
AAAGACCAGGAATTGGAACGTTATCGAAAGCTGAGTGAACGAAAatcgaa
agaaaataaattgaaCGCAAGTGCTGGTGTAAGCAGTtccaaaaagaagc
aaaaatgaATGAAGAAAGCTTGGCAAAGAGTAGGCGCTGTACACACTGAC
AAAAATATGATTTCTCCCCTGATGGTACCGCTTGTTATCATTGGAACAAA
ATATGATCTGTTTCAGgaATTGAGTACCAGTAAGAAAGAGATGGTATCTA
AAGCGTTGCGTTTTGTCAACCATTATCACGGTGGTATGATACAGtatttt
agtacAAAAGCAGAAGGGTTGAGTTCACGTACCAAGTCAGTCTTCAGTCA
CGTGGCTTTTAAAACATCTCTAAGtaaaACAACGTCTATTGACCCTGGAA
AGCCATTGATCGTCCCTTTTGGTGCCGATAGCCTTGAGCAAGTTGgagca
CCACCTGTCTCTTCTGATCGAATGATGAAAAATCGTGGAAAttcgCCGTA
TGAACTTTGGCAAAATGCATATGAAAGTGTCTTCCCTTCTCAGAATTCTG
AAGACACTGAGATTCAAACTAATCCAACTTTAGACAAAAATTTTGCCGAT
GAAACAATCGATAACGCACGAAAACAAAAAGACCAGGAATTGGAACGTTA
TCGAAAGCTGAGTGAACGAAAatcgaaagaaaataaattgaaCGCAAGTG
CTGGTGTAAGCAGTtccaaaaagaagcaaaaatgaATGAAGAAAGCTTGG
CAAAGAGTAGGCGCTGTACACACTGACAAAAATATGATTTCTCCCCTGAT
GGTACCGCTTGTTATCATTGGAACAAAATATGATCTGTTTCAGgaATTGA
GTACCAGTAAGAAAGAGATGGTATCTAAAGCGTTGCGTTTTGTCAACCAT
TATCACGGTGGTATGATACAGtattttagtacAAAAGCAGAAGGGTTGAG
TTCACGTACCAAGTCAGTCTTCAGTCACGTGGCTTTTAAAACATCTCTAA
GtaaaACAACGTCTATTGACCCTGGAAAGCCATTGATCGTCCCTTTTGGT
GCCGATAGCCTTGAGCAAGTTGgagcaCCACCTGTCTCTTCTGATCGAAT
GATGAAAAATCGTGGAAAttcgCCGTATGAACTTTGGCAAAATGCATATG
AAAGTGTCTTCCCTTCTCAGAATTCTGAAGACACTGAGATTCAAACTAAT
CCAACTTTAGACAAAAATTTTGCCGATGAAACAATCGATAACGCACGAAA
ACAAAAAGACCAGGAATTGGAACGTTATCGAAAGCTGAGTGAACGAAAat
cgaaagaaaataaattgaaCGCAAGTGCTGGTGTAAGCAGTtccaaaaag
aagcaaaaatgaATGAAGAAAGCTTGGCAAAGAGTAGGCGCTGTACACAC
TGACAAAAATATGATTTCTCCCCTGATGGTACCGCTTGTTATCATTGGAA
CAAAATATGATCTGTTTCAGgaATTGAGTACCAGTAAGAAAGAGATGGTA
TCTAAAGCGTTGCGTTTTGTCAACCATTATCACGGTGGTATGATACAGta
ttttagtacAAAAGCAGAAGGGTTGAGTTCACGTACCAAGTCAGTCTTCA
GTCACGTGGCTTTTAAAACATCTCTAAGtaaaACAACGTCTATTGACCCT
GGAAAGCCATTGATCGTCCCTTTTGGTGCCGATAGCCTTGAGCAAGTTGg
agcaCCACCTGTCTCTTCTGATCGAATGATGAAAAATCGTGGAAAttcgC
CGTATGAACTTTGGCAAAATGCATATGAAAGTGTCTTCCCTTCTCAGAAT
TCTGAAGACACTGAGATTCAAACTAATCCAACTTTAGACAAAAATTTTGC
CGATGAAACAATCGATAACGCACGAAAACAAAAAGACCAGGAATTGGAAC
GTTATCGAAAGCTGAGTGAACGAAAatcgaaagaaaataaattgaaCGCA
AGTGCTGGTGTAAGCAGTtccaaaaagaagcaaaaatgaATGAAGAAAGC
TTGGCAAAGAGTAGGCGCTGTACACACTGACAAAAATATGATTTCTCCCC
TGATGGTACCGCTTGTTATCATTGGAACAAAATATGATCTGTTTCAGgaA
TTGAGTACCAGTAAGAAAGAGATGGTATCTAAAGCGTTGCGTTTTGTCAA
CCATTATCACGGTGGTATGATACAGtattttagtacAAAAGCAGAAGGGT
TGAGTTCACGTACCAAGTCAGTCTTCAGTCACGTGGCTTTTAAAACATCT
CTAAGtaaaACAACGTCTATTGACCCTGGAAAGCCATTGATCGTCCCTTT
TGGTGCCGATAGCCTTGAGCAAGTTGgagcaCCACCTGTCTCTTCTGATC
GAATGATGAAAAATCGTGGAAAttcgCCGTATGAACTTTGGCAAAATGCA
TATGAAAGTGTCTTCCCTTCTCAGAATTCTGAAGACACTGAGATTCAAAC
TAATCCAACTTTAGACAAAAATTTTGCCGATGAAACAATCGATAACGCAC
GAAAACAAAAAGACCAGGAATTGGAACGTTATCGAAAGCTGAGTGAACGA
AAatcgaaagaaaataaattgaaCGCAAGTGCTGGTGTAAGCAGTtccaa
aaagaagcaaaaatgaATGAAGAAAGCTTGGCAAAGAGTAGGCGCTGTAC
ACACTGACAAAAATATGATTTCTCCCCTGATGGTACCGCTTGTTATCATT
GGAACAAAATATGATCTGTTTCAGgaATTGAGTACCAGTAAGAAAGAGAT
GGTATCTAAAGCGTTGCGTTTTGTCAACCATTATCACGGTGGTATGATAC
AGtattttagtacAAAAGCAGAAGGGTTGAGTTCACGTACCAAGTCAGTC
TTCAGTCACGTGGCTTTTAAAACATCTCTAAGtaaaACAACGTCTATTGA
CCCTGGAAAGCCATTGATCGTCCCTTTTGGTGCCGATAGCCTTGAGCAAG
TTGgagcaCCACCTGTCTCTTCTGATCGAATGATGAAAAATCGTGGAAAt
tcgCCGTATGAACTTTGGCAAAATGCATATGAAAGTGTCTTCCCTTCTCA
GAATTCTGAAGACACTGAGATTCAAACTAATCCAACTTTAGACAAAAATT
TTGCCGATGAAACAATCGATAACGCACGAAAACAAAAAGACCAGGAATTG
GAACGTTATCGAAAGCTGAGTGAACGAAAatcgaaagaaaataaattgaa
CGCAAGTGCTGGTGTAAGCAGTtccaaaaagaagcaaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016986XLOC_016986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029734-exon-sc0000768-1491911889:120362..120447TCONS_00029734-exon-sc0000768-1491911889:120362..120447Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:120362..120447TCONS_00029734-exon-sc0000768-1510915933:120362..120447Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:120362..120447TCONS_00029734-exon-sc0000768-1575043694:120362..120447Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:120876..120944TCONS_00029734-exon-sc0000768-1491911889:120876..120944Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:120876..120944TCONS_00029734-exon-sc0000768-1510915933:120876..120944Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:120876..120944TCONS_00029734-exon-sc0000768-1575043694:120876..120944Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:121297..121374TCONS_00029734-exon-sc0000768-1491911889:121297..121374Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:121297..121374TCONS_00029734-exon-sc0000768-1510915933:121297..121374Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:121297..121374TCONS_00029734-exon-sc0000768-1575043694:121297..121374Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:121826..121905TCONS_00029734-exon-sc0000768-1491911889:121826..121905Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:121826..121905TCONS_00029734-exon-sc0000768-1510915933:121826..121905Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:121826..121905TCONS_00029734-exon-sc0000768-1575043694:121826..121905Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:122199..122269TCONS_00029734-exon-sc0000768-1491911889:122199..122269Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:122199..122269TCONS_00029734-exon-sc0000768-1510915933:122199..122269Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:122199..122269TCONS_00029734-exon-sc0000768-1575043694:122199..122269Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:122900..122945TCONS_00029734-exon-sc0000768-1491911889:122900..122945Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:122900..122945TCONS_00029734-exon-sc0000768-1510915933:122900..122945Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:122900..122945TCONS_00029734-exon-sc0000768-1575043694:122900..122945Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:123469..123520TCONS_00029734-exon-sc0000768-1491911889:123469..123520Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:123469..123520TCONS_00029734-exon-sc0000768-1510915933:123469..123520Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:123469..123520TCONS_00029734-exon-sc0000768-1575043694:123469..123520Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:130871..130963TCONS_00029734-exon-sc0000768-1491911889:130871..130963Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:130871..130963TCONS_00029734-exon-sc0000768-1510915933:130871..130963Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:130871..130963TCONS_00029734-exon-sc0000768-1575043694:130871..130963Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:131324..131826TCONS_00029734-exon-sc0000768-1491911889:131324..131826Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:131324..131826TCONS_00029734-exon-sc0000768-1510915933:131324..131826Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:131324..131826TCONS_00029734-exon-sc0000768-1575043694:131324..131826Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1491911889:131984..132184TCONS_00029734-exon-sc0000768-1491911889:131984..132184Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1510915933:131984..132184TCONS_00029734-exon-sc0000768-1510915933:131984..132184Clytia hemisphaericaexon
TCONS_00029734-exon-sc0000768-1575043694:131984..132184TCONS_00029734-exon-sc0000768-1575043694:131984..132184Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029734-proteinTCONS_00029734-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000768supercontigsc0000768:120362..132184 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.3173	30.7811	52.1831	55.0932	80.0376	62.6461	50.5997	51.8007	43.9785	41.2192	32.3829	41.6692	18.3248	16.5572	17.8108	19.6997	15.9798	17.2207	23.3683	23.7525	19.1065	16.8876	16.6894	17.2814	57.3499	54.8371	15.958	16.5456	10.2676	10.0861
Blast
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BLAST of TCONS_00029734 vs. Swiss-Prot (Human)
Match: DC2L1 (Cytoplasmic dynein 2 light intermediate chain 1 OS=Homo sapiens GN=DYNC2LI1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.103e-43
Identity = 74/198 (37.37%), Postives = 120/198 (60.61%), Query Frame = 3 
Query:   42 ELMKKAWQRVGAVHTDKNMISPLMVPLVIIGTKYDLFQELSTSKKEMVSKALRFVNHYHGGMIQYFSTKAEGLSSRTKSVFSHVAFKTSLSKTTSIDPGKPLIVPFGADSLEQVGAPPVSSDRMMKNRGNSPYELWQNAYESVFPSQNSEDTEIQTNPTLDKNFADETIDNARKQKDQELERYRKLSERKSKENKLNA 635
            E+ +K W  +   H D  +I P  VPLVIIG+KYD+FQ+  + K++++ K LRFV HY+G  +  F++K+E L  + + V + +AF    SK+  +D  KPL +  G DS  Q+G+PPV  + + K   +SP ELW+  YE +FP ++    +   +P  D  +A+  +D  R QKD ELE+Y++ S +  K+ +L++
Sbjct:  155 EMRQKIWNNMPKDHPDHELIDPFPVPLVIIGSKYDVFQDFESEKRKVICKTLRFVAHYYGASLM-FTSKSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSPPVPENDIGKLHAHSPMELWKKVYEKLFPPKSINTLKDIKDPARDPQYAENEVDEMRIQKDLELEQYKRSSSKSWKQIELDS 351
The following BLAST results are available for this feature:
BLAST of TCONS_00029734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DC2L15.103e-4337.37Cytoplasmic dynein 2 light intermediate chain 1 OS... [more]
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