|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029700 ID=TCONS_00029700|Name=TCONS_00029700|organism=Clytia hemisphaerica|type=transcript|length=3221bpRun BLAST on NCBI protein sequence of TCONS_00029700-protein >TCONS_00029700-protein ID=TCONS_00029700-protein|Name=TCONS_00029700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=824bp FPGYVKMKSIDTTKMNDKKTKKRADQYKEITQKWRNDFITEINQARETRSRun BLAST on NCBI transcript from alignment at sc0000764:1196..26155+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029700 ID=TCONS_00029700|Name=TCONS_00029700|organism=Clytia hemisphaerica|type=transcript|length=24960bp|location=Sequence derived from alignment at sc0000764:1196..26155+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000764:1196..26155+ >TCONS_00029700 ID=TCONS_00029700|Name=TCONS_00029700|organism=Clytia hemisphaerica|type=CDS|length=34650bp|location=Sequence derived from alignment at sc0000764:1196..26155+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00029700 vs. Swiss-Prot (Human)
Match: RPOM (DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT PE=1 SV=2) HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0 Identity = 314/751 (41.81%), Postives = 461/751 (61.38%), Query Frame = 1
Query: 262 QGIPVNFICRKLGHLIYNRFTSKYKGEAGVSEKVQRIMEEYT---SSEEWIDKSLLPRQKWKEISLSLPYLASEQALPNVWPTKLRAMASSVLLDILKKVAEIDTKMFVKSNFTKIEQALSHHHELSGGPNRIGVLKFHPVVGRLFKSYLSQMGELSFESNKLPMLIPPRPWTNPTSGAYMLLHSDLVRTVTGQYKLNQLQSAAEDHQMDKIFDSLNYLGNTAWKINEPILDMMITLYNTTGDIKLDIIGP----------NLPNIERVNAKRKMTWEERKSRQRKKKLYHELFALRMDILYKLSVANHFRSETFWIPSNLDFRGRVYPIAPHCSHIGSDISRCLLMFAEGKKLGPNGLNWLKVHLVNIHGQLKKSSLEERINYADQHLEEIFDSADKPFEGEKWWQGGSDPWQTLVACIEVTKAIRSGDPENYISHIPIQQDGSCNGLQHYATLGRDEYGAKQVNLSPADRPADVYSEVASLVESARQKDADSGVLIAQQLDGKINRKVVKQTVMTVVYGVTFVGGRLQVEKQLKDIG-VESDILFKASVYVVQGVFKSLTEIFTTARQIQDWLTISAAQIALTGNCVDWTTPLGLPIIQPYHRET-TENISTPLQIVTTTQSYDYTQIPHLTKQKGGFPPNFVHSLDSTHMMMTSLRCQDNHLTYASVHDSFWTHAIDVEKMNKYCREEFVALHSLPILEDLKKHFEEKYAGLPLRKPLKDGRTVAHFDALPDKGSFVPEKVIDSVYFF 2469
QG + R+L ++R + + +G + +Q +Y +S+ + + LPRQ W+E L P EQ WP ++ +L ++L + ++ + +++ L H + +IG+LK HP +L + + L+FE+ +PML PP PWT+P SGA++L + L+RTV G + +L + D+L LGN AW++N +LD+++ L+ G +L + P +LP+ +A E R+ +K+ E+ +LR + LY+LS+A H R FW+P N+DFRGR YP PH +H+GSD++R LL FA+G+ LGP+GL+WLK+HLVN+ G K+ L +R+ +A++ +++I DSAD+P G KWW G +PWQTL C+EV A+R+ DP Y+SH+P+ QDGSCNGLQHYA LGRD GA VNL P+D P DVYS VA+ VE R++DA G+ +AQ L+G I RKVVKQTVMTVVYGVT GGRLQ+EK+L+++ + +++AS Y+V+ VFKSL E+F+ R IQ WLT SA I+ G+ V+W TPLG+P+IQPY ++ + I +Q +T T + D ++ P+ KQK GFPPNF+HSLDS+HMM+T+L C LT+ SVHD +WTHA DV MN+ CRE+FV LHS PIL+DL + +++ P +K L+ + A+P G+F E+V S YFF
Sbjct: 493 QGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEE--LGAPEALREQP----WPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLVPVLYHVYSFRNV-QQIGILKPHPAYVQLLEK--AAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPH----SAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEP-QKILEASQLKETLQAVPKPGAFDLEQVKRSTYFF 1229 The following BLAST results are available for this feature:
BLAST of TCONS_00029700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.