TCONS_00029690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029690
Unique NameTCONS_00029690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029690 ID=TCONS_00029690|Name=TCONS_00029690|organism=Clytia hemisphaerica|type=transcript|length=2201bp
CACGTTACCTCAAACCTCTGTGTACGACAACAACaccaaacaaaatcaaa
tttatcaacaacAGACACCAAACGACGGTAGTCCAAACCAACAACCGCAT
CAAACGCACCAATTACGGTCGCCAATCTATAAGGAACAGTTATCGTTCCC
TCAAACTCCTCAAATGAACACACAACGAAACTATCAGATGCCGCCCACTC
CTACTACGCCGTTAACGCCAACGCCATTCATCAACAATGATGACGTAATC
GCTAATTCGCCATATTACAATGACAAATACATGACGTCAGAGCTCGCGAT
GACCGCGCGGGCCTACGAGTTGCAACTACTGAGACATCAAGAACAGCTAT
ATGAAGAGGCTTGCCAAATGAATCGAATCAAGTTCTACAACGATTTTCAA
CAGCAAGGTTACGTGCCACCGCAATACGCGAACCTTAACTCGCACTCAAC
CCCCAACACACATCTTCAGTCGCCAACCAGTTCGTCCTCACAGCATACTT
TTCATTACGGTGGCCAACGATCACCTTCGGTGGCCCATCAACAAAAACTT
CAACGTGCAATGGAGAAACAGAAGAAAACTCAACAACGCCAGCAACGAAA
AAATAGATCTGTTTTAGATCCGTCGCATATTCAAAACGGAATTGTTCCAT
CAACAACTCAAGGCCATCGTAACCAACAACAGCAGAAAGAACACGAGAAA
TTATATATGGAAAGACTCGAGAAACAGCGTCAAGAACAAATCAAACTCTA
CCATCGAATCCAATACCAACAATATCAACAACATCAGAGATatcttcaac
aacaacaagtcCAACACAACAATTACAATCAACAACCTACTCAACAAAAT
CCAGGGTCGCCCTCCACTTATCAGCCTCCAAACTCGATGATGTTGTCACC
ACCTCTAACACCAACTCATCCAGCTAGCTATCAACCAGCGTTCCAGACTG
ACAACTATCACCAGAGTGTACCATCACCTTCTGTAAACAGACATCATCCA
TATTCTCCAGCGGCCTCAAGCAGTACCAGATCTGACCAGATCTCACACCG
CCCTCAATTTCAATGTCAGTCATATCCAACGCCAACAACCGAATTGGAGA
ATTCCTCTTTCGATTTCAGCCATTTATCACCTACAACTCAATACGAAATG
AAAAGAATCTCAAGACATAACGTCATCTCTAAACTCCGTCACATTCAAGA
AgtcaaacaacaaaaacaacttcACCAAGAAAAAATGGAACGTCTTGATC
GACTCGATCGCGCCCTTCGCTTTCAAGAGGAAAAACAATTACGTCAAATT
ACTCCCAACGCCCTTAATCAACACCCTGCGGACACTCTAACAGCTTTCCA
ACTAGCTTCGCCTGATAGTGGGCGTGGTAGCATTGAAGACTTGAACGATT
GTAAAGCATCAGACGAAAACAATAATGAAATAGACTTCCATTTTGAAACG
AATTCGGCCCCACTTCTGGATGTCGATAAAACAGGCCCCGTGGATCCAAC
AAATGCATGTCCGGGAATCAAACTGGCAGAGCAGAAATGTTTAATTAAGC
CAGCAGGTAATAGATGTCATACGAAATTACAAGCTTGGAGGTCGCGCATG
GATGACGAGGCGACCGAAGGGGCTGGGGACGAGTCAAACGAAAATACTGG
CATGGGTGAGAAAGTAAACACGCATGATAACCCTTATCTTGACGCTCCGT
CACCCGGCAATTTGGTTATTGATGAATGAGGATCTTGATAGACTTATAAA
ATGTTGTTTTAGTTTATATTCTTTGATTTAAAAGAACCTGTTATTTAGTT
TTCATTTCTCCGAtctcaactttttttatatttatatttttattttatat
tttgatataaaagACTATTTTACAGGGATGCTAGTATATTATTCCTCTTT
TCAACAAAACTATAATTTTTCTGGTGTTGCTTAGGAGGTAGCTTTCCCGT
TTGTTGTGTTTTATCTGCATTTTCTCGTTGTTTATGATACTTTCTTAGAA
GTTCTGTACGGAGACAGGGTGCCTCTGAATGATCAAATTCTTGATTATGA
ATGCTTAAAACTGACCCCTTTAAAGTCTTTGAAACCCTCTGTCTCTAATA
ATTGAATCCTTTTAAGGAGTTCAAATTTATTCCACATTAGTAATACAGTG
TCGCTTGTATTTCCACCCCTTTACCCACGATACCCGCCCCTCCCTATTGC
C
Run BLAST on NCBI

transcript from alignment at sc0000763:151254..155627-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029690 ID=TCONS_00029690|Name=TCONS_00029690|organism=Clytia hemisphaerica|type=transcript|length=4374bp|location=Sequence derived from alignment at sc0000763:151254..155627- (Clytia hemisphaerica)
CACGTTACCTCAAACCTCTGTGTAAGTAAATGCAATCAGCTCTCTCTAAT
TCGAACTTCTATTTTTCTCTGATTCGAAGAAAAGTATATACACGCTTTTT
TTATATAAGAATACAGTTTATAAGAATGACCATAATGAAAATGGCCAAAA
ATTTAAGAATATGGTAAGAATATCACCATCATGGAATTTAGCAACTGAAA
CTAAGAATGCCATTTTTTAAGCATTTTCATCAATAATAGCCCAGTAACGC
TCAATATTCTCCAGGCGTGTATTACATGGTAAAACCTAGGTTAATTTTCG
ATCTTTACCTAAGAACACCGTAAGAATATTTTAGGATGATTTTTGACAAA
AAATTAAGAATATCCATGATGAAATGAAAATGCACCATTCTTATAAAAAA
AGCGTGTACTTTTTAGTTGTCTTGCCAACTAAAATAATACGAAGTTATAA
AAGATAAAAGGACTTTAAAGTCTGTCTAATCTAGCACACTTTTCTTTTTA
TAAGAACCATTAAACTTTTGGCACTTGAGTCTCAAATTGTTATCATATTC
TTATTTTATAGGGTTTAATTGATGTATTTGAGGCTCTTTACTCAATTCTT
TTCCATTTTGACCGCTGAATTGCTTGAAATTGATTAATTCCGGGCTCAGC
ATTGTTCTTAAACCCATTGACCTTTTACATAGTTATAATGTATGTTGATT
CAGCAGATTGAAATTAATAGAATGTTTTGTAATGAATAAAGAAAAATGTG
GAGCAAGATTTTTTTCTTCCTTTTATTTACAAATTTGGAAGGACTCTTTT
ATTAAAATTTTGCTGACATCAGTTTCAGACGAGTCGGGTGTATATAACAC
CGTATAATTCCTTTAATCTTTGAGCCTCATTTCTTTATAAAAGACTGTAT
TCCTTTGATCCTGAATATGATTTGAATTATTTTCTCTTTTCACTTAGGTA
CGACAACAACACCAAACAAAATCAAATTTATCAACAACAGACACCAAACG
ACGGTAGTCCAAACCAACAACCGCATCAAACGCACCAATTACGGTCGCCA
ATCTATAAGGAACAGTTATCGTTCCCTCAAACTCCTCAAATGAACACACA
ACGAAACTATCAGATGCCGCCCACTCCTACTACGCCGTTAACGCCAACGC
CATTCATCAACAATGATGACGTAATCGCTAATTCGCCATATTACAATGAC
AAATACATGACGTCAGAGCTCGCGATGACCGCGCGGGCCTACGAGTTGCA
ACTACTGAGACATCAAGAACAGCTATATGAAGAGGCTTGCCAAATGAATC
GAATCAAGTTCTACAACGATTTTCAACAGCAAGGTTACGTGCCACCGCAA
TACGCGAACCTTAACTCGCACTCAACCCCCAACACACATCTTCAGTCGCC
AACCAGTTCGTCCTCACAGCATACTTTTCATTACGGTGGCCAACGATCAC
CTTCGGTGGCCCATCAACAAAAACTTCAACGTGCAATGGAGAAACAGAAG
AAAACTCAACAACGCCAGCAACGAAAAAATAGATCTGTTTTAGATCCGTC
GCATATTCAAAACGGAATTGTTCCATCAACAACTCAAGGCCATCGTAACC
AACAACAGCAGAAAGAACACGAGAAATTATATATGGAAAGACTTGAGAAA
CAGCGTCAAGAACAAATCAAACTCTACCATCGAATCCAATACCAACAATA
TCAACAACATCAGAGATATCTTCAACAACAACAAGTCCAACTCAACAATT
ACAATCAACAACCTACTCAACAAAATCCAGGGTCGCCCTCCACTTATCAG
CCTCCAAACTCGATGATGTTGTCACCACCTTTAACACCAACTCAACCAGC
TAGCTATCAACCAGCGTTCCAGACTGACAACTATCACCAGAGTGTACCAT
CACCTTCTGTAAACAGATATCATCCATATTCTCCAGCGGCCTCAAGCAGT
ACCAGATCTCACCAGATCTCACACCGCCCTCAATTTCAATGTCAGCCATA
TCCAACGCCAACAACCGAATTGGAGAATTCCTCTTTCGATTTCAGCCATT
TATCACCTGNTGACATCAGTTTCAGACGAGTCGGGTGTATATAACACCGT
ATAATTCCTTTAATCTTTGAGCCTCATTTCTTTATAAAAGACTGTATTCC
TTTGATCCTGAATATGATTTGAATTATTTTCTCTTTTCACTTAGGTACGA
CAACAACACCAAACAAAATCAAATTTATCAACAACAGACACCAAACGACG
GTAGTCCAAACCAACAACCGCATCAAACGCACCAATTACGGTCGCCAATC
TATAAGGAACAGTTATCGTTCCCTCAAACTCCTCAAATGAACACACAACG
AAACTATCAGATGCCGCCCACTCCTACTACGCCGTTAACGCCAACGCCAT
TCATCAACAATGATGACGTAATCGCTAATTCGCCATATTACAATGACAAA
TACATGACGTCAGAGCTCGCGATGACCGCGCGGGCCTACGAGTTGCAACT
ACTGAGACATCAAGAACAGCTATATGAAGAGGCTTGCCAAATGAATCGAA
TCAAGTTCTACAACGATTTTCAACAGCAAGGTTACGTGCCACCGCAATAC
GCGAACCTTAACTCGCACTCAACCCCCAACACACATCTTCAGTCGCCAAC
CAGTTCGTCCTCACAGCATACTTTTCATTACGGTGGCCAACGATCACCTT
CGGTGGCCCATCAACAAAAACTTCAACGTGCAATGGAGAAACAGAAGAAA
ACTCAACAACGCCAGCAACGAAAAAATAGATCTGTTTTAGATCCGTCGCA
TATTCAAAACGGAATTGTTCCATCAACAACTCAAGGCCATCGTAACCAAC
AACAGCAGAAAGAACACGAGAAATTATACATGGAAAGACTCGAGAAACAG
CGTCAAGAACAAATCAAACTCTACCATCGAATCCAATACCAACAATATCA
ACAACATCAGAGATATCTTCAACAACAACAAGTCCAACACAACAATTACA
ATCAACAACCTACTCAACAAAATCCAGGGTCGCCCTCCACTTATCAGCCT
CCAAACTCGATGATGTTGTCACCACCTCTAACACCAACTCATCCAGCTAG
CTATCAACCAGCGTTCCAGACTGACAACTATCACCAGAGTGTACCATCAC
CTTCTGTAAACAGACATCATCCATATTCTCCAGCGGCCTCAAGCAGTACC
AGATCTGACCAGATCTCACACCGCCCTCAATTTCAATGTCAGTCATATCC
AACGCCAACAACCGAATTGGAGAATTCCTCTTTCGATTTCAGCCATTTAT
CACCTACAACTCAATACGAAATGAAAAGAATCTCAAGACATAACGTCATC
TCTAAACTCCGTCACATTCAAGAAGTCAAACAACAAAAACAACTTCACCA
AGAAAAAATGGAACGTCTTGATCGACTCGATCGCGCCCTTCGCTTTCAAG
AGGAAAAACAATTACGTCAAATTACTCCCAACGCCCTTAATCAACACCCT
GCGGACACTCTAACAGCTTTCCAACTAGCTTCGCCTGATAGTGGGCGTGG
TAGCATTGAAGACTTGAACGATTGTAAAGCATCAGACGAAAACAATAATG
AAATAGACTTCCATTTTGAAACGAATTCGGCCCCACTTCTGGATGTCGAT
AAAACAGGCCCCGTGGATCCAACAAATGCATGTCCGGGAATCAAACTGGC
AGAGCAGAAATGTTTAATTAAGCCAGCAGGTAATAGATGTCATACGAAAT
TACAAGCTTGGAGGTCGCGCATGGATGACGAGGCGACCGAAGGGGCTGGG
GACGAGTCAAACGAAAATACTGGCATGGGTGAGAAAGTAAACACGCATGA
TAACCCTTATCTTGACGCTCCGTCACCCGGCAATTTGGTTATTGATGAAT
GAGGATCTTGATAGACTTATAAAATGTTGTTTTAGTTTATATTCTTTGAT
TTAAAAGAACCTGTTATTTAGTTTTCATTTCTCCGATCTCAACTTTTTTT
ATATTTATATTTTTATTTTATATTTTGATATAAAAGACTATTTTACAGGG
ATGCTAGTATATTATTCCTCTTTTCAACAAAACTATAATTTTTCTGGTGT
TGCTTAGGAGGTAGCTTTCCCGTTTGTTGTGTTTTATCTGCATTTTCTCG
TTGTTTATGATACTTTCTTAGAAGTTCTGTACGGAGACAGGGTGCCTCTG
AATGATCAAATTCTTGATTATGAATGCTTAAAACTGACCCCTTTAAAGTC
TTTGAAACCCTCTGTCTCTAATAATTGAATCCTTTTAAGGAGTTCAAATT
TATTCCACATTAGTAATACAGTGTCGCTTGTATTTCCACCCCTTTACCCA
CGATACCCGCCCCTCCCTATTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016964XLOC_016964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029690-exon-sc0000763-1575043694:155607..155627TCONS_00029690-exon-sc0000763-1575043694:155607..155627Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1575043694:153996..154680TCONS_00029690-exon-sc0000763-1575043694:153996..154680Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1575043694:151254..152748TCONS_00029690-exon-sc0000763-1575043694:151254..152748Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1510915933:155607..155627TCONS_00029690-exon-sc0000763-1510915933:155607..155627Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1510915933:153996..154680TCONS_00029690-exon-sc0000763-1510915933:153996..154680Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1510915933:151254..152748TCONS_00029690-exon-sc0000763-1510915933:151254..152748Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1491911889:155607..155627TCONS_00029690-exon-sc0000763-1491911889:155607..155627Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1491911889:153996..154680TCONS_00029690-exon-sc0000763-1491911889:153996..154680Clytia hemisphaericaexon
TCONS_00029690-exon-sc0000763-1491911889:151254..152748TCONS_00029690-exon-sc0000763-1491911889:151254..152748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:151254..155627 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.8505	2.88359	0.801711	0.567196	19.7826	19.7885	9.98538	13.8334	4.06358	4.91963	3.25026	2.47784	3.07628	4.98173	5.28698	7.02421	3.89759	3.82212	1.81799	1.34577	2.94661	3.75659	6.31518	5.10542	2.95555	2.18621	1.59331	1.53351	5.29775	5.11058
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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