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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029685 ID=TCONS_00029685|Name=TCONS_00029685|organism=Clytia hemisphaerica|type=transcript|length=731bp
caaaaataaaacacctCCTTGATCGGATTGGATGCATGGCTTTAGAACAG
TTCTTCTCTAAAAATGATGAAACCAATACCAAGGGTCATTCCTACGATCA
TCTTGGTCTGTTGTTTCTTGTTGATAACAAATGATGCCAAAGATTTGAGA
AGAGGAGAAACACAGCCGTTGAATCATACCGGAGATGCAAGGACCACTAC
AAAGTCTATGAACTTCACTAACAATGTTGAGAATGTGATCGAAAATACTA
CGGCAGCAAGCCGTTCTGTAAATTatactgaaaatgaaatgacTGGCAGC
TCGATGAATTTCACTGAAAATATCATGATCGATAGCTCTTCAAAAATTAA
CTataCCACACCGATAGAAGACCAAGACTTCATTGTAAATTTAACAGACA
TGTCCGTCCATGAAAACATACGAACGTCAGCTACACAACCTTTACCTCAA
GTCCCTGCAAGTGCAACAATGATTCTACCTAACGTGTACCAAAGTCTAGC
TCCTTCAAAATCACTTCACATGGCAACAGTGCCATCGTCTACGATGAATT
ATCTCCCTAATGTTTTGAGTGGCAATGGTGCAGAAAATGAAGGAGATAAT
GAAGGTGGTGATGATGATGACAGGAATATGCAATCTAGTGGAGATTCTGA
AAGTAGTGGAGAAACATCAGGGAGTGGAGAAGACGGAGAAGGGAGTGGCA
AAGAAAACGAAGAAGTCACTGGCAGTGGTGA Run BLAST on NCBI protein sequence of TCONS_00029685-protein >TCONS_00029685-protein ID=TCONS_00029685-protein|Name=TCONS_00029685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MMKPIPRVIPTIILVCCFLLITNDAKDLRRGETQPLNHTGDARTTTKSMN
FTNNVENVIENTTAASRSVNYTENEMTGSSMNFTENIMIDSSSKINYTTP
IEDQDFIVNLTDMSVHENIRTSATQPLPQVPASATMILPNVYQSLAPSKS
LHMATVPSSTMNYLPNVLSGNGAENEGDNEGGDDDDRNMQSSGDSESSGE
TSGSGEDGEGSGKENEEVTGSG Run BLAST on NCBI transcript from alignment at sc0000763:21602..26647- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029685 ID=TCONS_00029685|Name=TCONS_00029685|organism=Clytia hemisphaerica|type=transcript|length=5046bp|location=Sequence derived from alignment at sc0000763:21602..26647- (Clytia hemisphaerica)
CAAAAATAAAACACCTCCTTGATCGGATTGGATGCATGGCTTTAGAACAG
TTCTTCTCTAAAGTTAGTTCGACTAAATATCAGCAAACCAGAAAATATCA
TACAAACTTTGATTTTGGCGAGAAACTTATTTGCGTTAAGAAAATTTGTT
AAAAATCCGCTGAAAACTAATTTTAGTGAAAAACAGGTTGGCTCGGTTGG
CTCTCTGCCTAATTCTGGGCGTTTAGGTAGACTGGAGTCGTTTATAATAC
GTATGTGATACCAGGTGATATGGTTGTTATGTGATAATGCTATACATGAC
TGTTACGGGATGAAACTAGTTTGTACTATTCACGTACTATTATAGTCTAG
CAAGCTAGACGACTAATTCAGACGTAGTAGAAATAAAGCAAAAAAGTAAT
GGAGGGAGGGAACAATTTTATGACAAACTAAATCCCGTAACAATAATCGT
ATTATCATATAACGCCTATACTACTGTATTACACGCATCATAAACGACTC
TAGTCTAGTACTATTATAATTTTCTCAAGTTTTTCTTCTAGCATGCTAGA
ATATAGCGTTTTTAGGAAAAACTTTTGGGTTATTATGGAAATTATGAAAA
ATGTTCCTTAGGACAATATCTTACAACTTGTCTACCGTTATTTTGATTTT
TGGTAGTTACTAATCTTCGTTTATTTAGTCCTATTGTCCTTAACTTTTTT
GTCAATTTTCTTTAAGAAGAATGATGAAACCAATACCAAGGGTAATTCCT
ACTNACGCTGCGTTAACTGTTTTTTACGAGAGTATAAAAGAAAGCAGATC
GAAATGACAGATTTTCATTATCTTTAAAATGGTTTAAAGTAAAGGCTAAA
AAGGAAACAAAAATAAAACACCTCCTTGATCGGATTGGATGCATGGCTTT
AGAACAGTTCTTCTCTAAAGTTAGTTCGACTAAATATCAGCAAACCAGAA
AATATCATACAAACTTTGATTTTGGCGAGAAACTTATTTGCGTTAAGAAA
ATTTGTTAAAAATCCGCTGAAAACTAATTTTAGTGAAAAACAGGTTGGCT
CGGTTGGCTCTCTGCCTAATTCTGGGCGTTTAGGTAGACTGGAGTCGTTT
ATAATACGTATGTGATACCAGGTGATATGGTTGTTATGTGATAATGCTAT
ACATGACTGTTACGGGATGAAACTAGTTTGTACTATTCACGTACTATTAT
AGTCTAGCAAGCTAGACGACTAATTCAGACGTAGTAGAAATAAAGCAAAA
AGTAATGGAGGGGACAATTTTATGACAAACTAAATCCCGTAACAATAATC
GTATTATCATATAACGCCTATACTACTGTATTATACGCATCATAAACGAC
TCTAGTCTAGTACTATTATAATTTTCTCAAGTTTTTCTTCTAGCATGCTA
GAATATAGCATTTTTAGGACAAACTTTTGGGTTATTATGGAAATTATAAA
AAATGTTCCTTAGGACAATATCTTACAACTTGTCTACCGTTATTTTGATT
TTTGGTAGTACTAATTTTCGTTAATTTAGTCCTATTGACCTTAATTTTTT
TTGCCCATTTTCTTTAAGAAGAATGATGAAACCAATACCAAGGGTCATTC
CTACGATCATCTTGGTCTGTTGTTTCTTGTTGATAACAAATGATGCCAAA
GATTTGAGAAGAGGAGAAACACAGCCGTTGAATCATACCGGAGATGCAAG
GACCACTACAAAGTCTATGAACTTCACTAACAATGTTGAGAATGTGATCG
AAAATACTACGGCAGCAAGCCGTTCTGTAAATTATACTGAAAATGAAATG
ACTGGCAGCTCGATGAATTTCACTGAAAATATCATGATCGATAGCTCTTC
AAAAATTAACTGTAAGAATTGTTAAGTTGTTTTGAAAGTAAGATTTTTGA
AAATACACGTTTAATGCAAGGAAAAGTATTTACCGCATTAGATTCTTAAA
GGTGTTGGAGATATTTTAAAAACCTGGTGGTGAATTGAGGAGGTAATTTA
ACAGCTTGGTAGTAAATCTTTCAGAATTTTAAAAAGTCAAAGGGTGGGTA
GGAATAAAATTTTAAAAGAATTCGAAGACTTACTATGGATAACCTTGGAA
GCGTCCCCAAGACTTTCCAGCGAAATTCGTATGCTGACAACTACAGGGGA
TTAAGGCATCTTTAGAAAAAATTTCAATTAATTTCGATACTTAAACATTA
AAATAGCAAAAATCTACGCAAAATCCGAGTTTTTTTTTGCAAATTTCTTA
ATATGAAAACATCTTATTCTTCTTCCTGATACCCTTTATTTGAACCCAAA
ATGAGCTTCTAGAAATGATTTGTAACGTTGCAAGAATTTTGACCTCCACG
AACCCGCCTTATTCACCTGGAGAACCCCCTANCGCTGCGTTAACTGTTTT
TTACGAGAGTATAAAAGAAAGCAGATCGAAATGACAGATTTTCATTATCT
TTAAAATGGTTTAAAGTAAAGGCTAAAAAGGAAACAAAAATAAAACACCT
CCTTGATCGGATTGGATGCATGGCTTTAGAACAGTTCTTCTCTAAAGTTA
GTTCGACTAAATATCAGCAAACCAGAAAATATCATACAAACTTTGATTTT
GGCGAGAAACTTATTTGCGTTAAGAAAATTTGTTAAAAATCCGCTGAAAA
CTAATTTTAGTGAAAAACAGGTTGGCTCGGTTGGCTCTCTGCCTAATTCT
GGGCGTTTAGGTAGACTGGAGTCGTTTATAATACGTATGTGATACCAGGT
GATATGGTTGTTATGTGATAATGCTATACATGACTGTTACGGGATGAAAC
TAGTTTGTACTATTCACGTACTATTATAGTCTAGCAAGCTAGACGACTAA
TTCAGACGTAGTAGAAATAAAGCAAAAAGTAATGGAGGGGACAATTTTAT
GACAAACTAAATCCCGTAACAATAATCGTATTATCATATAACGCCTATAC
TACTGTATTATACGCATCATAAACGACTCTAGTCTAGTACTATTATAATT
TTCTCAAGTTTTTCTTCTAGCATGCTAGAATATAGCATTTTTAGGACAAA
CTTTTGGGTTATTATGGAAATTATAAAAAATGTTCCTTAGGACAATATCT
TACAACTTGTCTACCGTTATTTTGATTTTTGGTAGTACTAATTTTCGTTA
ATTTAGTCCTATTGACCTTAATTTTTTTTGCCCATTTTCTTTAAGAAGAA
TGATGAAACCAATACCAAGGGTCATTCCTACGATCATCTTGGTCTGTTGT
TTCTTGTTGATAACAAATGATGCCAAAGATTTGAGAAGAGGAGAAACACA
GCCGTTGAATCATACCGGAGATGCAAGGACCACTACAAAGTCTATGAACT
TCACTAACAATGTTGAGAATGTGATCGAAAATACTACGGCAGCAAGCCGT
TCTGTAAATTATACTGAAAATGAAATGACTGGCAGCTCGATGAATTTCAC
TGAAAATATCATGATCGATAGCTCTTCAAAAATTAACTGTAAGAATTGTT
AAGTTGTTTTGAAAGTAAGATTTTTGAAAATACACGTTTAATGCAAGGAA
AAGTATTTACCGCATTAGATTCTTAAAGGTGTTGGAGATATTTTAAAAAC
CTGGTGGTGAATTGAGGAGGTAATTTAACAGCTTGGTAGTAAATCTTTCA
GAATTTTAAAAAGTCAAAGGGTGGGTAGGAATAAAATTTTAAAAGAATTC
GAAGACTTACTATGGATAACCTTGGAAGCGTCCCCAAGACTTTCCAGCGA
AATTCGTATGCTGACAACTACAGGGGATTAAGGCATCTTTAGAAAAAATT
TCAATTAATTTCGATACTTAAACATTAAAATAGCAAAAATCTACGCAAAA
TCCGAGTTTTTTTTTGCAAATTTCTTAATATGAAAACATCTTATTCTTCT
TCCTGATACCCTTTATTTGAACCCAAAATGAGCTTCTAGAAATGATTTGT
AACGTTGCAAGAATTTTGACCTCCACGAACCCGCCTTATTCACCTGGAGA
ACCCCCTGTCTTTTTAGAAATGATATTTCTTTTGCCTACATCTGTCTGTA
TTAGTCTCCTTTTCAAATATTTTCTAGCCTGAATATTTTTTTAAATTTCA
ACCATAGCGACCAGCGTGGTCGGCTTTTGAGGGGCCTGGTATTACATCGC
TGCTAAGGGTTGGTAGCTGTATTAGGTACCCTTGTGCGTGTGTGTTACAT
GTCATTTGGATACAATCCTAGATTTAAATGGTGAGACAAGAGTAAAATTT
GAACTTCACCCCCTTCCCCCAGTAGAAAGTCGTCCGATATTAGCATTGGA
ACTGGAAGGAGAGGGGGACCTTTTCACTGGCATTAATTTCCAGTGATTCC
ATCTAGGATTGTAGCTGAAAAAGGAGATGATCTAATGGAAGCAGCACTTT
GTCATTGAACGTCTTTCTTTTTAAGATACCACACCGATAGAAGACCAAGA
CTTCATTGTAAATTTAACAGACATGTCCGTCCATGAAAACATACGAACGT
CAGCTACACAACCTTTACCTCAAGTCCCTGCAAGTGCAACAATGATTCTA
CCTAACGTGTACCAAAGTCTAGCTCCTTCAAAATCACTTCACATGGCAAC
AGTGCCATCGTCTACGATGAATTATCTCCCTAATGTTTTGAGTGGCAATG
GTGCAGAAAATGAAGGAGATAATGAAGGTGGTGATGATGATGACAGGAAT
ATGCAATCTAGTGGAGATTCTGAAAGTAGTGGAGGTAATACTTTAAGAAG
TTGAAGAATTTACCTTAAAACTAAAATTTGATTAAGTCCCCCTTCGATGA
TGTAGTATATGCAAACGAAACCTCATCTCTGTTGTATAAAGATTTTAAGA
AGATCAAAGGATGAGAACCTTGACTATTCCAACTATTCGAATTCATCGGA
TTCGAAAAAGAGAGTTGATTTACAATTTTAAAATTGTTAAAACAACACGT
GTATCTTTTCTAAATTCTTTCTAAAGAAACATCAGGGAGTGGAGAAGACG
GAGAAGGGAGTGGCAAAGAAAACGAAGAAGTCACTGGCAGTGGTGA Coding sequence (CDS) from alignment at sc0000763:21602..26647- >TCONS_00029685 ID=TCONS_00029685|Name=TCONS_00029685|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000763:21602..26647- (Clytia hemisphaerica)
AAACATCAGGGAGTGGAGAAGACGGAGAAGGGAGTGGCAAAGAAAACGAA
GAAGTCACTGGCAGTGGTATACCACACCGATAGAAGACCAAGACTTCATT
GTAAATTTAACAGACATGTCCGTCCATGAAAACATACGAACGTCAGCTAC
ACAACCTTTACCTCAAGTCCCTGCAAGTGCAACAATGATTCTACCTAACG
TGTACCAAAGTCTAGCTCCTTCAAAATCACTTCACATGGCAACAGTGCCA
TCGTCTACGATGAATTATCTCCCTAATGTTTTGAGTGGCAATGGTGCAGA
AAATGAAGGAGATAATGAAGGTGGTGATGATGATGACAGGAATATGCAAT
CTAGTGGAGATTCTGAAAGTAGTGGAGATGATGAAACCAATACCAAGGGT
CATTCCTACGATCATCTTGGTCTGTTGTTTCTTGTTGATAACAAATGATG
CCAAAGATTTGAGAAGAGGAGAAACACAGCCGTTGAATCATACCGGAGAT
GCAAGGACCACTACAAAGTCTATGAACTTCACTAACAATGTTGAGAATGT
GATCGAAAATACTACGGCAGCAAGCCGTTCTGTAAATTATACTGAAAATG
AAATGACTGGCAGCTCGATGAATTTCACTGAAAATATCATGATCGATAGC
TCTTCAAAAATTAACTAAACATCAGGGAGTGGAGAAGACGGAGAAGGGAG
TGGCAAAGAAAACGAAGAAGTCACTGGCAGTGGTATACCACACCGATAGA
AGACCAAGACTTCATTGTAAATTTAACAGACATGTCCGTCCATGAAAACA
TACGAACGTCAGCTACACAACCTTTACCTCAAGTCCCTGCAAGTGCAACA
ATGATTCTACCTAACGTGTACCAAAGTCTAGCTCCTTCAAAATCACTTCA
CATGGCAACAGTGCCATCGTCTACGATGAATTATCTCCCTAATGTTTTGA
GTGGCAATGGTGCAGAAAATGAAGGAGATAATGAAGGTGGTGATGATGAT
GACAGGAATATGCAATCTAGTGGAGATTCTGAAAGTAGTGGAGATGATGA
AACCAATACCAAGGGTCATTCCTACGATCATCTTGGTCTGTTGTTTCTTG
TTGATAACAAATGATGCCAAAGATTTGAGAAGAGGAGAAACACAGCCGTT
GAATCATACCGGAGATGCAAGGACCACTACAAAGTCTATGAACTTCACTA
ACAATGTTGAGAATGTGATCGAAAATACTACGGCAGCAAGCCGTTCTGTA
AATTATACTGAAAATGAAATGACTGGCAGCTCGATGAATTTCACTGAAAA
TATCATGATCGATAGCTCTTCAAAAATTAACTAAACATCAGGGAGTGGAG
AAGACGGAGAAGGGAGTGGCAAAGAAAACGAAGAAGTCACTGGCAGTGGT
ATACCACACCGATAGAAGACCAAGACTTCATTGTAAATTTAACAGACATG
TCCGTCCATGAAAACATACGAACGTCAGCTACACAACCTTTACCTCAAGT
CCCTGCAAGTGCAACAATGATTCTACCTAACGTGTACCAAAGTCTAGCTC
CTTCAAAATCACTTCACATGGCAACAGTGCCATCGTCTACGATGAATTAT
CTCCCTAATGTTTTGAGTGGCAATGGTGCAGAAAATGAAGGAGATAATGA
AGGTGGTGATGATGATGACAGGAATATGCAATCTAGTGGAGATTCTGAAA
GTAGTGGAGATGATGAAACCAATACCAAGGGTCATTCCTACGATCATCTT
GGTCTGTTGTTTCTTGTTGATAACAAATGATGCCAAAGATTTGAGAAGAG
GAGAAACACAGCCGTTGAATCATACCGGAGATGCAAGGACCACTACAAAG
TCTATGAACTTCACTAACAATGTTGAGAATGTGATCGAAAATACTACGGC
AGCAAGCCGTTCTGTAAATTATACTGAAAATGAAATGACTGGCAGCTCGA
TGAATTTCACTGAAAATATCATGATCGATAGCTCTTCAAAAATTAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00029685-exon-sc0000763-1575043694:26586..26647 | TCONS_00029685-exon-sc0000763-1575043694:26586..26647 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1575043694:24787..25076 | TCONS_00029685-exon-sc0000763-1575043694:24787..25076 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1575043694:21914..22222 | TCONS_00029685-exon-sc0000763-1575043694:21914..22222 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1575043694:21602..21671 | TCONS_00029685-exon-sc0000763-1575043694:21602..21671 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1510915933:26586..26647 | TCONS_00029685-exon-sc0000763-1510915933:26586..26647 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1510915933:24787..25076 | TCONS_00029685-exon-sc0000763-1510915933:24787..25076 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1510915933:21914..22222 | TCONS_00029685-exon-sc0000763-1510915933:21914..22222 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1510915933:21602..21671 | TCONS_00029685-exon-sc0000763-1510915933:21602..21671 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1491911889:26586..26647 | TCONS_00029685-exon-sc0000763-1491911889:26586..26647 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1491911889:24787..25076 | TCONS_00029685-exon-sc0000763-1491911889:24787..25076 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1491911889:21914..22222 | TCONS_00029685-exon-sc0000763-1491911889:21914..22222 | Clytia hemisphaerica | exon |
| TCONS_00029685-exon-sc0000763-1491911889:21602..21671 | TCONS_00029685-exon-sc0000763-1491911889:21602..21671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000763 | supercontig | sc0000763:21602..26647 - |
Blast
The following BLAST results are available for this feature:
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