TCONS_00029684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029684
Unique NameTCONS_00029684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029684 ID=TCONS_00029684|Name=TCONS_00029684|organism=Clytia hemisphaerica|type=transcript|length=731bp
caaaaataaaacacctCCTTGATCGGATTGGATGCATGGCTTTAGAACAG
TTCTTCTCTAAAAATGATGAAACCAATACCAAGGGTCATTCCTACGATCA
TCTTGGTCTGTTGTTTCTTGTTGATAACAAATGATGCCAAAGATTTGAGA
AGAGGAGAAACACAGCCGTTGAATCATACCGGAGATGCAAGGACCACTAC
AAAGTCTATGAACTTCACTAACAATGTTGAGAATGTGATCGAAAATACTA
CGGCAGCAAGCCGTTCTGTAAATTatactgaaaatgaaatgacTGGCAGC
TCGATGAATTTCACTGAAAATATCATGATCGATAGCTCTTCAAAAATTAA
CTataCCACACCGATAGAAGACCAAGACTTCATTGTAAATTTAACAGACA
TGTCCGTCCATGAAAACATACGAACGTCAGCTACACAACCTTTACCTCAA
GTCCCTGCAAGTGCAACAATGATTCTACCTAACGTGTACCAAAGTCTAGC
TCCTTCAAAATCACTTCACATGGCAACAGTGCCATCGTCTACGATGAATT
ATCTCCCTAATGTTTTGAGTGGCAATGGTGCAGAAAATGAAGGAGATAAT
GAAGGTGGTGATGATGATGACAGGAATATGCAATCTAGTGGAGATTCTGA
AAGTAGTGGAGAAACATCAGGGAGTGGAGAAGACGGAGAAGGGAGTGGCA
AAGAAAACGAAGAAGTCACTGGCAGTGGTGA
Run BLAST on NCBI

transcript from alignment at sc0000763:21602..25790-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029684 ID=TCONS_00029684|Name=TCONS_00029684|organism=Clytia hemisphaerica|type=transcript|length=4189bp|location=Sequence derived from alignment at sc0000763:21602..25790- (Clytia hemisphaerica)
CAAAAATAAAACACCTCCTTGATCGGATTGGATGCATGGCTTTAGAACAG
TTCTTCTCTAAAGTTAGTTCGACTAAATATCAGCAAACCAGAAAATATCA
TACAAACTTTGATTTTGGCGAGAAACTTATTTGCGTTAAGAAAATTTGTT
AAAAATCCGCTGAAAACTAATTTTAGTGAAAAACAGGTTGGCTCGGTTGG
CTCTCTGCCTAATTCTGGGCGTTTAGGTAGACTGGAGTCGTTTATAATAC
GTATGTGATACCAGGTGATATGGTTGTTATGTGATAATGCTATACATGAC
TGTTACGGGATGAAACTAGTTTGTACTATTCACGTACTATTATAGTCTAG
CAAGCTAGACGACTAATTCAGACGTAGTAGAAATAAAGCAAAAAGTAATG
GAGGGGACAATTTTATGACAAACTAAATCCCGTAACAATAATCGTATTAT
CATATAACGCCTATACTACTGTATTATACGCATCATAAACGACTCTAGTC
TAGTACTATTATAATTTTCTCAAGTTTTTCTTCTAGCATGCTAGAATATA
GCATTTTTAGGACAAACTTTTGGGTTATTATGGAAATTATAAAAAATGTT
CCTTAGGACAATATCTTACAACTTGTCTACCGTTATTTTGATTTTTGGTA
GTACTAATTTTCGTTAATTTAGTCCTATTGACCTTAATTTTTTTTGCCCA
TTTTCTTTAAGAAGAATGATGAAACCAATACCAAGGGTCATTCCTACGAT
CATCTTGGTCTGTTGTTTCTTGTTGATAACAAATGATGCCAAAGATTTGA
GAAGAGGAGAAACACAGCCGTTGAATCATACCGGAGATGCAAGGACCACT
ACAAAGTCTATGAACTTCACTAACAATGTTGAGAATGTGATCGAAAATAC
TACGGCAGCAAGCCGTTCTGTAAATTATACTGAAAATGAAATGACTGGCA
GCTCGATGAATTTCACTGAAAATATCATGATCGATAGCTCTTCAAAAATT
AACTGTAAGAATTGTTAAGTTGTTTTGAAAGTAAGATTTTTGAAAATACA
CGTTTAATGCAAGGAAAAGTATTTACCGCATTAGATTCTTAAAGGTGTTG
GAGATATTTTAAAAACCTGGTGGTGAATTGAGGAGGTAATTTAACAGCTT
GGTAGTAAATCTTTCAGAATTTTAAAAAGTCAAAGGGTGGGTAGGAATAA
AATTTTAAAAGAATTCGAAGACTTACTATGGATAACCTTGGAAGCGTCCC
CAAGACTTTCCAGCGAAATTCGTATGCTGACAACTACAGGGGATTAAGGC
ATCTTTAGAAAAAATTTCAATTAATTTCGATACTTAAACATTAAAATAGC
AAAAATCTACGCAAAATCCGAGTTTTTTTTTGCAAATTTCTTAATATGAA
AACATCTTATTCTTCTTCCTGATACCCTTTATTTGAACCCAAAATGAGCT
TCTAGAAATGATTTGTAACGTTGCAAGAATTTTGACCTCCACGAACCCGC
CTTATTCACCTGGAGAACCCCCTANCGCTGCGTTAACTGTTTTTTACGAG
AGTATAAAAGAAAGCAGATCGAAATGACAGATTTTCATTATCTTTAAAAT
GGTTTAAAGTAAAGGCTAAAAAGGAAACAAAAATAAAACACCTCCTTGAT
CGGATTGGATGCATGGCTTTAGAACAGTTCTTCTCTAAAGTTAGTTCGAC
TAAATATCAGCAAACCAGAAAATATCATACAAACTTTGATTTTGGCGAGA
AACTTATTTGCGTTAAGAAAATTTGTTAAAAATCCGCTGAAAACTAATTT
TAGTGAAAAACAGGTTGGCTCGGTTGGCTCTCTGCCTAATTCTGGGCGTT
TAGGTAGACTGGAGTCGTTTATAATACGTATGTGATACCAGGTGATATGG
TTGTTATGTGATAATGCTATACATGACTGTTACGGGATGAAACTAGTTTG
TACTATTCACGTACTATTATAGTCTAGCAAGCTAGACGACTAATTCAGAC
GTAGTAGAAATAAAGCAAAAAGTAATGGAGGGGACAATTTTATGACAAAC
TAAATCCCGTAACAATAATCGTATTATCATATAACGCCTATACTACTGTA
TTATACGCATCATAAACGACTCTAGTCTAGTACTATTATAATTTTCTCAA
GTTTTTCTTCTAGCATGCTAGAATATAGCATTTTTAGGACAAACTTTTGG
GTTATTATGGAAATTATAAAAAATGTTCCTTAGGACAATATCTTACAACT
TGTCTACCGTTATTTTGATTTTTGGTAGTACTAATTTTCGTTAATTTAGT
CCTATTGACCTTAATTTTTTTTGCCCATTTTCTTTAAGAAGAATGATGAA
ACCAATACCAAGGGTCATTCCTACGATCATCTTGGTCTGTTGTTTCTTGT
TGATAACAAATGATGCCAAAGATTTGAGAAGAGGAGAAACACAGCCGTTG
AATCATACCGGAGATGCAAGGACCACTACAAAGTCTATGAACTTCACTAA
CAATGTTGAGAATGTGATCGAAAATACTACGGCAGCAAGCCGTTCTGTAA
ATTATACTGAAAATGAAATGACTGGCAGCTCGATGAATTTCACTGAAAAT
ATCATGATCGATAGCTCTTCAAAAATTAACTGTAAGAATTGTTAAGTTGT
TTTGAAAGTAAGATTTTTGAAAATACACGTTTAATGCAAGGAAAAGTATT
TACCGCATTAGATTCTTAAAGGTGTTGGAGATATTTTAAAAACCTGGTGG
TGAATTGAGGAGGTAATTTAACAGCTTGGTAGTAAATCTTTCAGAATTTT
AAAAAGTCAAAGGGTGGGTAGGAATAAAATTTTAAAAGAATTCGAAGACT
TACTATGGATAACCTTGGAAGCGTCCCCAAGACTTTCCAGCGAAATTCGT
ATGCTGACAACTACAGGGGATTAAGGCATCTTTAGAAAAAATTTCAATTA
ATTTCGATACTTAAACATTAAAATAGCAAAAATCTACGCAAAATCCGAGT
TTTTTTTTGCAAATTTCTTAATATGAAAACATCTTATTCTTCTTCCTGAT
ACCCTTTATTTGAACCCAAAATGAGCTTCTAGAAATGATTTGTAACGTTG
CAAGAATTTTGACCTCCACGAACCCGCCTTATTCACCTGGAGAACCCCCT
GTCTTTTTAGAAATGATATTTCTTTTGCCTACATCTGTCTGTATTAGTCT
CCTTTTCAAATATTTTCTAGCCTGAATATTTTTTTAAATTTCAACCATAG
CGACCAGCGTGGTCGGCTTTTGAGGGGCCTGGTATTACATCGCTGCTAAG
GGTTGGTAGCTGTATTAGGTACCCTTGTGCGTGTGTGTTACATGTCATTT
GGATACAATCCTAGATTTAAATGGTGAGACAAGAGTAAAATTTGAACTTC
ACCCCCTTCCCCCAGTAGAAAGTCGTCCGATATTAGCATTGGAACTGGAA
GGAGAGGGGGACCTTTTCACTGGCATTAATTTCCAGTGATTCCATCTAGG
ATTGTAGCTGAAAAAGGAGATGATCTAATGGAAGCAGCACTTTGTCATTG
AACGTCTTTCTTTTTAAGATACCACACCGATAGAAGACCAAGACTTCATT
GTAAATTTAACAGACATGTCCGTCCATGAAAACATACGAACGTCAGCTAC
ACAACCTTTACCTCAAGTCCCTGCAAGTGCAACAATGATTCTACCTAACG
TGTACCAAAGTCTAGCTCCTTCAAAATCACTTCACATGGCAACAGTGCCA
TCGTCTACGATGAATTATCTCCCTAATGTTTTGAGTGGCAATGGTGCAGA
AAATGAAGGAGATAATGAAGGTGGTGATGATGATGACAGGAATATGCAAT
CTAGTGGAGATTCTGAAAGTAGTGGAGGTAATACTTTAAGAAGTTGAAGA
ATTTACCTTAAAACTAAAATTTGATTAAGTCCCCCTTCGATGATGTAGTA
TATGCAAACGAAACCTCATCTCTGTTGTATAAAGATTTTAAGAAGATCAA
AGGATGAGAACCTTGACTATTCCAACTATTCGAATTCATCGGATTCGAAA
AAGAGAGTTGATTTACAATTTTAAAATTGTTAAAACAACACGTGTATCTT
TTCTAAATTCTTTCTAAAGAAACATCAGGGAGTGGAGAAGACGGAGAAGG
GAGTGGCAAAGAAAACGAAGAAGTCACTGGCAGTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016961XLOC_016961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029684-exon-sc0000763-1575043694:25729..25790TCONS_00029684-exon-sc0000763-1575043694:25729..25790Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1575043694:24787..25076TCONS_00029684-exon-sc0000763-1575043694:24787..25076Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1575043694:21914..22222TCONS_00029684-exon-sc0000763-1575043694:21914..22222Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1575043694:21602..21671TCONS_00029684-exon-sc0000763-1575043694:21602..21671Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1510915933:25729..25790TCONS_00029684-exon-sc0000763-1510915933:25729..25790Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1510915933:24787..25076TCONS_00029684-exon-sc0000763-1510915933:24787..25076Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1510915933:21914..22222TCONS_00029684-exon-sc0000763-1510915933:21914..22222Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1510915933:21602..21671TCONS_00029684-exon-sc0000763-1510915933:21602..21671Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1491911889:25729..25790TCONS_00029684-exon-sc0000763-1491911889:25729..25790Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1491911889:24787..25076TCONS_00029684-exon-sc0000763-1491911889:24787..25076Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1491911889:21914..22222TCONS_00029684-exon-sc0000763-1491911889:21914..22222Clytia hemisphaericaexon
TCONS_00029684-exon-sc0000763-1491911889:21602..21671TCONS_00029684-exon-sc0000763-1491911889:21602..21671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:21602..25790 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.303477	0	0	0.366619	0	0.400107	0.749151	0.486819	0.164445	0	0	0.988039	1.0818	0.185454	0.28886	8.69012	1.26526	0.725771	1.09968	4.51383	6.17113	0.713168	3.18882	15.37	9.83944	54.2096	38.4242	4.36514	4.94629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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