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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029621 ID=TCONS_00029621|Name=TCONS_00029621|organism=Clytia hemisphaerica|type=transcript|length=902bp
CTGAAATCAGCATGGATCTTAAGTGAAAACAAGTGAGAAAGCAACACATC
TGAACACATagatgagtaaatttttgacAAACCTAGTTGCGCAAAAGCTT
GATGGAAATTTCTTGCACTCTGTCTTCTTGATATAATCTTCTCGCCGTGC
CGGTGAATCATGGAAAAGCTGAAACGAcccttttaaaatcttttttaacc
CCCAATCTGAACTTTCCGTTCCAACTTTGAAAGCATTATGTATGGTGTGG
ATTCCACATGAACCAATATCAATAAGTCGATGTTGTTGATTTAATTCTCT
TTCTTCTTGAACAAGTTTGAGTAGTGATAGGTTGACGTTAGGGCCGTCCA
TACCAATTTGTACGAGTTTGTTTGTATCTAATTTTTTGACAGATTCGTCT
AAATTGTTTTTGAGATCAGCTGAAGTTGCATGACCAAGGAAACATGAATC
AAAGTAGCGTGTTTTCACCAACTTATCagtttcgtcaaaatatctgaTCA
GAATATCCATCTCCGATTTTTGATTAAACGCATTCAAGCTCTCATCATAA
GAAAGAACAAAGCAAGGGCTTGCCATTATCCTGTCCATTAGACACGTTTT
AAAGTATGGTGCTagaccaaaatttgtcatgtacATCAGTTTGGTAGAGC
CcaaagaaaaatctttagtgATTGGACAAGGGAAAATATGATTGAAAATC
TTTCCTACATCTGAGCAACTATTGTAAGAATAACCAGCGTCTATGCATTT
TAAAGCCCAACAGATTTCGGCTTGTACAACGTCTGCATATGTGGTGACAA
CTTCTAAGGTTGTTTGTACCTTTTTACCAGGTGTTTGCTGGCTAGCTGAT
GACGTTTGTTCGCTAGTTGAAGGATTTTTCTGGACACTTTTTTTAGACTT
TC Run BLAST on NCBI protein sequence of TCONS_00029621-protein >TCONS_00029621-protein ID=TCONS_00029621-protein|Name=TCONS_00029621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
KSKKSVQKNPSTSEQTSSASQQTPGKKVQTTLEVVTTYADVVQAEICWAL
KCIDAGYSYNSCSDVGKIFNHIFPCPITKDFSLGSTKLMYMTNFGLAPYF
KTCLMDRIMASPCFVLSYDESLNAFNQKSEMDILIRYFDETDKLVKTRYF
DSCFLGHATSADLKNNLDESVKKLDTNKLVQIGMDGPNVNLSLLKLVQEE
RELNQQHRLIDIGSCGIHTIHNAFKVGTESSDWGLKKILKGSFQLFHDSP
ARREDYIKKTECKKFPSSFCATRFVKNLLIYVFRCVAFSLVFT Run BLAST on NCBI transcript from alignment at sc0000757:158571..159472 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029621 ID=TCONS_00029621|Name=TCONS_00029621|organism=Clytia hemisphaerica|type=transcript|length=902bp|location=Sequence derived from alignment at sc0000757:158571..159472 (Clytia hemisphaerica)
GAAAGTCTAAAAAAAGTGTCCAGAAAAATCCTTCAACTAGCGAACAAACG
TCATCAGCTAGCCAGCAAACACCTGGTAAAAAGGTACAAACAACCTTAGA
AGTTGTCACCACATATGCAGACGTTGTACAAGCCGAAATCTGTTGGGCTT
TAAAATGCATAGACGCTGGTTATTCTTACAATAGTTGCTCAGATGTAGGA
AAGATTTTCAATCATATTTTCCCTTGTCCAATcactaaagatttttcttt
gGGCTCTACCAAACTGATgtacatgacaaattttggtctAGCACCATACT
TTAAAACGTGTCTAATGGACAGGATAATGGCAAGCCCTTGCTTTGTTCTT
TCTTATGATGAGAGCTTGAATGCGTTTAATCAAAAATCGGAGATGGATAT
TCTGAtcagatattttgacgaaactGATAAGTTGGTGAAAACACGCTACT
TTGATTCATGTTTCCTTGGTCATGCAACTTCAGCTGATCTCAAAAACAAT
TTAGACGAATCTGTCAAAAAATTAGATACAAACAAACTCGTACAAATTGG
TATGGACGGCCCTAACGTCAACCTATCACTACTCAAACTTGTTCAAGAAG
AAAGAGAATTAAATCAACAACATCGACTTATTGATATTGGTTCATGTGGA
ATCCACACCATACATAATGCTTTCAAAGTTGGAACGGAAAGTTCAGATTG
GGggttaaaaaagattttaaaagggTCGTTTCAGCTTTTCCATGATTCAC
CGGCACGGCGAGAAGATTATATCAAGAAGACAGAGTGCAAGAAATTTCCA
TCAAGCTTTTGCGCAACTAGGTTTgtcaaaaatttactcatctATGTGTT
CAGATGTGTTGCTTTCTCACTTGTTTTCACTTAAGATCCATGCTGATTTC
AG Coding sequence (CDS) from alignment at sc0000757:158571..159472 >TCONS_00029621 ID=TCONS_00029621|Name=TCONS_00029621|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000757:158571..159472 (Clytia hemisphaerica)
AAGTCTAAAAAAAGTGTCCAGAAAAATCCTTCAACTAGCGAACAAACGTC
ATCAGCTAGCCAGCAAACACCTGGTAAAAAGGTACAAACAACCTTAGAAG
TTGTCACCACATATGCAGACGTTGTACAAGCCGAAATCTGTTGGGCTTTA
AAATGCATAGACGCTGGTTATTCTTACAATAGTTGCTCAGATGTAGGAAA
GATTTTCAATCATATTTTCCCTTGTCCAATcactaaagatttttctttgG
GCTCTACCAAACTGATgtacatgacaaattttggtctAGCACCATACTTT
AAAACGTGTCTAATGGACAGGATAATGGCAAGCCCTTGCTTTGTTCTTTC
TTATGATGAGAGCTTGAATGCGTTTAATCAAAAATCGGAGATGGATATTC
TGAtcagatattttgacgaaactGATAAGTTGGTGAAAACACGCTACTTT
GATTCATGTTTCCTTGGTCATGCAACTTCAGCTGATCTCAAAAACAATTT
AGACGAATCTGTCAAAAAATTAGATACAAACAAACTCGTACAAATTGGTA
TGGACGGCCCTAACGTCAACCTATCACTACTCAAACTTGTTCAAGAAGAA
AGAGAATTAAATCAACAACATCGACTTATTGATATTGGTTCATGTGGAAT
CCACACCATACATAATGCTTTCAAAGTTGGAACGGAAAGTTCAGATTGGG
ggttaaaaaagattttaaaagggTCGTTTCAGCTTTTCCATGATTCACCG
GCACGGCGAGAAGATTATATCAAGAAGACAGAGTGCAAGAAATTTCCATC
AAGCTTTTGCGCAACTAGGTTTgtcaaaaatttactcatctATGTGTTCA
GATGTGTTGCTTTCTCACTTGTTTTCACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029621-exon-sc0000757-1491911889:158571..159472 | TCONS_00029621-exon-sc0000757-1491911889:158571..159472 | Clytia hemisphaerica | exon |
| TCONS_00029621-exon-sc0000757-1510915933:158571..159472 | TCONS_00029621-exon-sc0000757-1510915933:158571..159472 | Clytia hemisphaerica | exon |
| TCONS_00029621-exon-sc0000757-1575043694:158571..159472 | TCONS_00029621-exon-sc0000757-1575043694:158571..159472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000757 | supercontig | sc0000757:158571..159472 . |
Blast
The following BLAST results are available for this feature:
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