TCONS_00029587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029587
Unique NameTCONS_00029587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029587 ID=TCONS_00029587|Name=TCONS_00029587|organism=Clytia hemisphaerica|type=transcript|length=591bp
TATAACTTTGATTATTCCAAAATGGAGTGGTTTTTTGGAgtggttttttg
tttttccttttaccTGGGATAGTGCTGCTAACATATTAAGACTAAAGTTT
ATTATGCCAGTGTTTAATCTGTAGCACTCCCTTTGTTCAGGGGATAAGGA
ACTCCCTGTCCTTTTTGGTGTCGATGATTGTTTGGTTTATGATTATTGAA
TTTATCCTGATACCACCAAGAAATGCCCATTGGACCCTTGAACCAAAATA
TTGTGCACCAAACTTATGGAAGTTAAAGGCtggcaatcacaaatattttt
attttgcatCCATATTTTATTCATTCCGGAATCTCCACTCTCACTTGATA
CAATCGATAACTTTTCCGTTGTCAGATTATATATATATGGATTGGACTTA
AATTGATCTTGATAATAATCAGGTTTTTAAGGCTGGGAGGCTTGATTACA
CCTAGTTCATTGATTATTCATCAATAGCCTCTAGAGCAAAGATGACtgat
gaaaaataacaatcatCAATAACCGATATTCAAGATGATTTTGAAATAGC
CTCTTGATGACCCATAGATTATTGGAATAAATTGATATCCA
Run BLAST on NCBI

transcript from alignment at sc0000756:87577..88167

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029587 ID=TCONS_00029587|Name=TCONS_00029587|organism=Clytia hemisphaerica|type=transcript|length=591bp|location=Sequence derived from alignment at sc0000756:87577..88167 (Clytia hemisphaerica)
TGGATATCAATTTATTCCAATAATCTATGGGTCATCAAGAGGCTATTTCA
AAATCATCTTGAATATCGGTTATTGatgattgttatttttcatcaGTCAT
CTTTGCTCTAGAGGCTATTGATGAATAATCAATGAACTAGGTGTAATCAA
GCCTCCCAGCCTTAAAAACCTGATTATTATCAAGATCAATTTAAGTCCAA
TCCATATATATATAATCTGACAACGGAAAAGTTATCGATTGTATCAAGTG
AGAGTGGAGATTCCGGAATGAATAAAATATGGatgcaaaataaaaatatt
tgtgattgccaGCCTTTAACTTCCATAAGTTTGGTGCACAATATTTTGGT
TCAAGGGTCCAATGGGCATTTCTTGGTGGTATCAGGATAAATTCAATAAT
CATAAACCAAACAATCATCGACACCAAAAAGGACAGGGAGTTCCTTATCC
CCTGAACAAAGGGAGTGCTACAGATTAAACACTGGCATAATAAACTTTAG
TCTTAATATGTTAGCAGCACTATCCCAggtaaaaggaaaaacaaaaaacc
acTCCAAAAAACCACTCCATTTTGGAATAATCAAAGTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016899XLOC_016899Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029587-exon-sc0000756-1491911889:87577..88167TCONS_00029587-exon-sc0000756-1491911889:87577..88167Clytia hemisphaericaexon
TCONS_00029587-exon-sc0000756-1510915933:87577..88167TCONS_00029587-exon-sc0000756-1510915933:87577..88167Clytia hemisphaericaexon
TCONS_00029587-exon-sc0000756-1575043694:87577..88167TCONS_00029587-exon-sc0000756-1575043694:87577..88167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000756supercontigsc0000756:87577..88167 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.365004	0.172414	3.47939	3.03511	0.447323	0.508762	0.170798	0.727237	0.882509	0.479417	0.7787	0.158606	1.15031	0.488525	0.895316	0.56335	0.375663	0.678593	1.24842	1.18763	0.746113	0	0.461583	0.445385	0	0	1.837	1.01808	0.161733	0.419321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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