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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029508 ID=TCONS_00029508|Name=TCONS_00029508|organism=Clytia hemisphaerica|type=transcript|length=371bp
aggGATTCAAAAAATAATGCACTTGGCATAAGGAACTGCAACCTAATGAA
GGTTTACGAAGCAAAGGAAGTGGGGGCTTCAACATCAACTACATCATCAC
AAAGTGTccaaaatggaaaataacttgGTGTTGATAGtgaaaAAGGCAAA
CACCAGATTTCAAAATGCCGTAAAATTCTTGATATGAGAGGCTCAGTCAT
TATGAAACTGATGCAGAGTGGATTCTTTTACGATACCGATCTCGGATGCG
TTCAAATCCCTTTCGCTGATATCATTTATGCTAGCAAAGCAGGACCTGGC
ACATGGCACCCCGTATTGCAAGGTTTAAGAGAAACAGACAGCGAGCTCTT
TTGTGATGCAAGATtcgaatt Run BLAST on NCBI transcript from alignment at sc0000752:138023..144878- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029508 ID=TCONS_00029508|Name=TCONS_00029508|organism=Clytia hemisphaerica|type=transcript|length=6856bp|location=Sequence derived from alignment at sc0000752:138023..144878- (Clytia hemisphaerica)
AGGGATTCAAAAAATAATGCACTTGGCATAAGGAACTGCAACCTAATGAA
GGTTTACGAAGCAAAGGAAGTGGGGGCTTCAACATCAACTACATCATCAC
AAAGTGTCCAAAATGGAAAATAACTTGGTGTTGATAGGTACTTCATTTTT
TTTAACTGTTCGAGGGCGTTTACTTACTACGCGTTTTTTGTTTATAAGAA
CATTTAAATATTTGAAGCCTTCGGATGTTCTTAACCTTTTGAGTTTTATT
AAACCTAAAAATGATCCTTAAAATGGTGTTTCACCGTTTTGTGAGTATTT
TTGCGCCATTTCCTAAGAAATTGGGTGTTTAGAGTCATTACAGCCTTAAA
TGTTCTTAACTTATTCTTAATATTTTGCCCATTAAAGTTATTATAGTTTG
TTCTTATGANTTTATCTATTCATGATATGCACCACTGCAATGACTTCACG
AAATTATGCAACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCT
ATTGTTTAAAAGTGACGCATTATGGGTGGAAAATTCTAAAAGTTCTCAGA
AGACTCTCCAGTGGTGCATATCATCTATACCCAATGTGTGAAGAATCTTT
AAAAGTCAAGGAGATGTAGCAATCAAAATAAGATTTTTTGCTGTTTTTAA
AATCGTTCAATTTCTTAAAGGTTTTGTTTTTACATAAGTGTTTCCGTTTC
ATATCAGACACATATTTCATATCAGGACACAGTGTCTCCCTATTGTTTTA
TTGTGCTGATATGAACAAAAAAATGTTTTTCTTTTCCTCTTTCTGACCAA
AATGCTCCACATCCGTGTCAATTCCATGTGAAGAACTTTGTAAATTAAAA
TTGATGAGTAAGCAAACAATATCACTCTTTTTTAAAAACAAAACCTTTAA
AGTAAGCCATATATTTTAACCTACTAATATGAATATAGATGAATTTCTGA
GGTTAACGAGATATTACTTTTAACTATTTTTTACTCCTTCGAGAGCAATG
TATCAAAATGTGTGGACTCTCAATATTTTTCGATCAGACTTTTATAAATT
TGTATTATTTAATTACAGAAGAAAACAAATTTGAAAAAAACAACAAGAGG
GATTCAAAAAATAATGCACTTGGCATAAGGAACTGCAACCTAATGAAGGT
TTACGAAGCAAAGGAAGTGGGGGCTTCAACATCAACTACATCATCACAAA
GTGTCCAAAATGGAAAATAACTTGGTGTTGATAGGTACTTCATTTTTTTT
AACTGTTCGAGGGCGTTTACTTACTACGCGTTTTTTGTTTATAAGAACAT
TTAAATATTTGAAGCCTTCGGATGTTCTTAACCTTTTGAGTTTTATTAAA
CCTAAAAATGATCCTTAAAATGGTGTTTCACCGTTTTGTGAGTATTTTTG
CGCCATTTCCTAAGAAATTGGGTGTTTAGAGTCATTACAGCCTTAAATGT
TCTTAACTTATTCTTAATATTTTGCCCATTAAAGTTATTATAGTTTGTTC
TTATGAAAAAATGTGTATATGTTAATTAGGGTTATAATGAGATATGACTT
ATTGAGGATCTTCAAATTTTAACTTCTATCGGNTTTATCTATTCATGATA
TGCACCACTGCAATGACTTCACGAAATTATGCAACTTTTCTGTTTTTGTT
CCACCCAATACGTCACTTTTTCTATTGTTTAAAAGTGACGCATTATGGGT
GGAAAATTCTAAAAGTTCTCAGAAGACTCTCCAGTGGTGCATATCATCTA
TACCCAATGTGTGAAGAATCTTTAAAAGTCAAGGAGATGTAGCAATCAAA
ATAAGATTTTTTGCTGTTTTTAAAATCGTTCAATTTCTTAAAGGTTTTGT
TTTTACATAAGTGTTTCCGTTTCATATCAGACACATATTTCATATCAGGA
CACAGTGTCTCCCTATTGTTTTATTGTGCTGATATGAACAAAAAAATGTT
TTTCTTTTCCTCTTTCTGACCAAAATGCTCCACATCCGTGTCAATTCCAT
GTGAAGAACTTTGTAAATTAAAATTGATGAGTAAGCAAACAATATCACTC
TTTTTTAAAAACAAAACCTTTAAAGTAAGCCATATATTTTAACCTACTAA
TATGAATATAGATGAATTTCTGAGGTTAACGAGATATTACTTTTAACTAT
TTTTTACTCCTTCGAGAGCAATGTATCAAAATGTGTGGACTCTCAATATT
TTTCGATCAGACTTTTATAAATTTGTATTATTTAATTACAGAAGAAAACA
AATTTGAAAAAAACAACAAGAGGGATTCAAAAAATAATGCACTTGGCATA
AGGAACTGCAACCTAATGAAGGTTTACGAAGCAAAGGAAGTGGGGGCTTC
AACATCAACTACATCATCACAAAGTGTCCAAAATGGAAAATAACTTGGTG
TTGATAGGTACTTCATTTTTTTTAACTGTTCGAGGGCGTTTACTTACTAC
GCGTTTTTTGTTTATAAGAACATTTAAATATTTGAAGCCTTCGGATGTTC
TTAACCTTTTGAGTTTTATTAAACCTAAAAATGATCCTTAAAATGGTGTT
TCACCGTTTTGTGAGTATTTTTGCGCCATTTCCTAAGAAATTGGGTGTTT
AGAGTCATTACAGCCTTAAATGTTCTTAACTTATTCTTAATATTTTGCCC
ATTAAAGTTATTATAGTTTGTTCTTATGAAAAAATGTGTATATGTTAATT
AGGGTTATAATGAGATATGACTTATTGAGGATCTTCAAATTTTAACTTCT
ATCGGTATATCTTCATTTCCCATAACATTGAGTTGATGAAAGCAGTACAT
CTTCTTCGTAGAATTTTTTTTTATTTGTTTGGCATTGATGGTGATTTTCA
TTAAAAAACTACAAATACATTGCACTTAAAAATAATGTTTTAATCAGAAT
GCTTTGTTTAAAAGGTATGTCCCTATCCAGTATGTTTTGTGGATATTAAA
GTATCGAGGCTTTTAACTTTATTTATTTTACTTCTTTTCATTTTCAGTGA
AAAAGGCAAACACCAGATTTCAAAATGCCGGTAAGTTTTTGTAAATTTCT
AAATCTTAGACTTAGTTTCCTTGTTTACATAATTTTTTCATTCTCTATTT
TTGAATCCCTGTTACATATATACCAAAATTAAAAAGCTAATACAGTGTTA
AGAGTACATTGTACATATAAATAGCGAGTACCTCGCCAAAACCAGAATTT
CTATCCAGTTTCTTGGTAAGTGTGAACCCATCTGGCACACAACGTTGTTA
CAACGTTCATCTAACGTTATATGGACGTTGTGAACATTAGATGAACGTTG
AAACAACGTTGTGTGCCAGCTTTATAAGAGCTTAAATTTTTTGTTTAGAT
ATGCTTAGATATGCTTTAGATATGATTGGCAATTCGCAGTTAGTCTAAAA
GTTTCGTTCGTTGTCTAAACAATTACTTTTACGAGCAGACCGAGGTTTTC
ATTGCCGGCTTAAGGTATAACTTCCTTGCTTAAACGTTTCCCTTCCTAAA
AGGAAGGGGTCTTGAGTGTAAATCTGGGTTTCCACGACAATTCACAGTGG
GAGGCTGATAGGTTTGTTTAAAGTAAAAAGAAAAGATTTTAATATGAATT
GTTCACTTTTGTTACCTCAACAATTTATCTGGCACCCAGATGGTGAAATT
TTCATCCGACACGCTAAAGCTCTGAAGGTCGGGGAAATTTTCAACATCTG
GAAGCTTTAGATTACGGAATTTTGCAAAGACTCGTTAAGTATTTTGCAAC
GGGAGGTCTGGTAACCCAGCCCTCGTTTTCGGGGATTGGCGGGCCCAACC
GAAATATTTTAAGGTTTACGAGCAAGGGCTGCTGAACCCGACTGGGTCAA
AGTCCGACTATCATTCCTCTCCAAAGGGAAATTGGCCCGCTGCCATTAGA
GCTTCAGCGTGGGCGGCCGCCAATCCGCCATCGGAATATCAGATAACCTC
AATAAGACGAAGAACGATAGCAGGAGGATAAGTGACTCATCCATTGATAT
TGTCATAAGTCTAAACATTTTACGGAATGTTGGTCGAGTTGTCAAGATGT
GAGGGCCTATGTTCAGTCCACTTCTTAGATAGCCGAGCCGGCTTGCCGTG
GACCACGTGAAAACAATCGAGTAAAAAGTCCTAGATTACTGGGCTATATC
CGCGTAAAATATCGCTTCTAAAACTTTTTCAAGCAATGATTTTAAATATC
AACTTTTTGCCTACTTATTCAATTAGAATAGACAGGGAGAAAAAGTCGCC
AGTCTAAACTAGTACTAAACAAGTCTCTAGTTGAAAAATTTCTGTTCTTT
CTATTGGGCTTTTCCAGAAAAAATTTGAATATGGGGGGTGGAGGATATAA
CAATTTTCAGTGATTTACCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGATATAACAATT
TTCGGGGATTTCCCCCCCCCCCCCTGGACAAAGTGACTTTTGGCCCCCGG
ACAACGGGTTTTACCCCCGGGCAACGGGTTTTACCCCCGGGCAACGGGTT
TTACCCCCGGGAAACGGTTTTTATCCCCGGACAAGCATCAGTTGACCCCC
CAGACAACCCAAATTACCCCCGGACAGAGCAAATTTACCTCCCGGACAAT
GCAAAATTTGATGATTTTTTGCTACCCCCGGACAATATATCCTCCACCCC
CATGTACGGACATTTTCTGGAAGAGCCTATTTCACAAACAAATTTCTTTT
CTCTTTCAGTAAAATTCTTGATATGAGAGGCTCAGTCATTATGAAACTGA
TGCAGAGTGGATTCTTTTACGATACCGATCTCGGATGCGTTCAAATCCCT
TTCGCTGATATCATTTATGCTAGCAAAGTAAGGATGCCTCATCTTTGTTA
AAAGAAGACCATAGTAGAAACCTTGGTCTTCATACAATGTTATGCCTTAT
GCATTTTTAAAAGAATTTGGATTTGCGTTCATCTTTGTTAAAAGGTTTTA
TTTTTAAATAATAGTGATATCGTTTGCTTACTAATCAATTTTAATTCACA
AGCTTTTTCACATTGGATAGACACGGATGTGGAGCTGGATTGGTCAGAAA
TAGGAAAAAAATATTTCTTTTTGCTTATATCAGCATAATATAACAATAGG
AAGACACTGTCCTGATATGAAATATTTGTCTGATAAGAAACGAAAACACT
TATGTAAAAGTGAAACATTTAAAAGAAGACCACGGTAGAAACCTTGGTTT
TCATATTTATTTATTAAAGAATTGAGGTTCAAGGCGCGCCGTGGGCCTCT
AAGAACCTATCTTTTTTACAAATGCTTGTTGTTATAATTTTCTTTAGGTA
TAGTTTTGTTCTGGGGCTTCCCCTGANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCCTCCTCTCTCTCTTCCGTGAATACTCC
AATCCTCTGTGTGTTTACAATTTTTATGTCCTTGATACCCAGTTGTAATC
CAAGGACTCTGTACTTGATAAATTTCTCGTCGTAAATTTTCGTTGTATTC
TCAGGATCCTCCAAATGTTCTTTGATTCCATGGAAAATTAGGTTGCACGC
TGTGGATCGTTGTTTGCCGACTGTTTCATATAATGTTTTTTTTTCCCCGA
TTTCTAATATTGTACCCGAATAACAATGAGACTATTTATAAAATTTGGAG
AAATAAACTATAGACAAACAAAAATAATAAACTGACAATAAATATAAAAA
TACTCGTATAAATATATAGTTAAATAAAAGCAAATTAGATTCTTGAATAA
CTCTCAGAAATACTCGGACAAAAAACTGTCCTGTTCTGGAGTCCGTACGG
GACTCACAGTACGCGAACCCCGAAAACACACATGAATGAATTTTATCAGC
GAAAAGTTTATCTTTCTTGTTATCCAAGACATTGTCTCGGAGTATGAAGA
ATGTCTCTTTTCTGAAATCATAGAGGCAAGCCGTCGAATAGCTTTGCCGC
ATTCTCGACCGTAAGCACCAGTCGCAGAAAATACCATTGGTGTTAGTGAG
CCATGTTCATATAATGTTATGCTTCGAACGCTCACGGGTGATCTCTGCAT
TTTTAAAGAAATACCGTATGTCGCTCTGTTACGGTTAGAGGAGCGGTTCT
GAGCGTTTCACTAGTACCAACTTTATGGTACTATAAATCATCTGAAAACA
TGCGAGCTGAAAAATGAACGATATGGATAAAGGAACGCCACTTCAGTTGA
AGCTGCTCACATGCAAAAAATGGAAACCACAGAGACTTTCAGAGAACTGC
GAAAAAATGTCTTAGACATAGAATTGTTACCTTTTTTATGCAAACGCTGT
ATTTAAACATTCTCTTTTCTCAGGCAGGACCTGGCACATGGCACCCCGTA
TTGCAAGGTTTAAGAGAAACAGACAGCGAGCTCTTTTGTGATGCAAGATT
CGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029508-exon-sc0000752-1575043694:144742..144878 | TCONS_00029508-exon-sc0000752-1575043694:144742..144878 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1575043694:141849..141881 | TCONS_00029508-exon-sc0000752-1575043694:141849..141881 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1575043694:140002..140119 | TCONS_00029508-exon-sc0000752-1575043694:140002..140119 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1575043694:138023..138105 | TCONS_00029508-exon-sc0000752-1575043694:138023..138105 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1510915933:144742..144878 | TCONS_00029508-exon-sc0000752-1510915933:144742..144878 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1510915933:141849..141881 | TCONS_00029508-exon-sc0000752-1510915933:141849..141881 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1510915933:140002..140119 | TCONS_00029508-exon-sc0000752-1510915933:140002..140119 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1510915933:138023..138105 | TCONS_00029508-exon-sc0000752-1510915933:138023..138105 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1491911889:144742..144878 | TCONS_00029508-exon-sc0000752-1491911889:144742..144878 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1491911889:141849..141881 | TCONS_00029508-exon-sc0000752-1491911889:141849..141881 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1491911889:140002..140119 | TCONS_00029508-exon-sc0000752-1491911889:140002..140119 | Clytia hemisphaerica | exon |
| TCONS_00029508-exon-sc0000752-1491911889:138023..138105 | TCONS_00029508-exon-sc0000752-1491911889:138023..138105 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000752 | supercontig | sc0000752:138023..144878 - |
Blast
The following BLAST results are available for this feature:
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