TCONS_00029491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029491
Unique NameTCONS_00029491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029491 ID=TCONS_00029491|Name=TCONS_00029491|organism=Clytia hemisphaerica|type=transcript|length=799bp
AAGCGCGTGAATATGCTAAAAGGAAATGTGAAATTATCTCTTAAAATTTC
GGTGGTGTATGGCTTAAGGGATTTTCATTTCCGCACGAAAAAATACTCTA
AAGTCATCATAAACAAATGCCAGACTACAAAAGGTATCAAAAAATagctt
tttcttaaaattctcaAAGTTGTTGACATTTCGATTGTCATTTGAAAACG
CACGAAAAAGGAGTCACAATAAAAATCGTGTCGCCAAAAATTGCATAATC
TGtaacaaaaaaatgttcaacCAATCAATGATAAGTGTTCGGGATTTTCG
TCCAATCAAATAACGATTATCTACAGTCGCTGTCCAATGAGTGATCGAGT
GATCGAGTGTACACTTACATTAACCAATCAAAAACTATTATAAGAGGTCG
ACCTCATTGGTTAcaagttgttgtttttgtttttcttgtgaATCGAATAT
TTTAATCGTAGGATGTATTGTCTTTTATTGTTGCAGTCATTAAGAGAAAA
AGTCAGTCGCATTTTTTGTAGTCTTCGTCTTAAATTGCACTTCTCTGAAG
CCGTGTCGCCAATCTGATACCAGACACCGCGACCAATGGGTACTCTTTAT
TTCTCTattctgttttttatttctttgtcaaaaaagtaactaaaacacaa
acaaaacatatacaaaaaaaaacaaagtaaagaaataaaattctgGCGGA
TAAAAATAGTGATAAAATTAATACCGATTTTATTACATCGTTTACACTCT
CTGCTATCGATGACTCGTGTATCAAAATCTATTTGATGTGCTCGATTTC
Run BLAST on NCBI

transcript from alignment at sc0000749:156350..157148

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029491 ID=TCONS_00029491|Name=TCONS_00029491|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at sc0000749:156350..157148 (Clytia hemisphaerica)
GAAATCGAGCACATCAAATAGATTTTGATACACGAGTCATCGATAGCAGA
GAGTGTAAACGATGTAATAAAATCGGTATTAATTTTATCACTATTTTTAT
CCGCcagaattttatttctttactttgtttttttttgtatatgttttgtt
tgtgttttagttacttttttgacaaagaaataaaaaacagaatAGAGAAA
TAAAGAGTACCCATTGGTCGCGGTGTCTGGTATCAGATTGGCGACACGGC
TTCAGAGAAGTGCAATTTAAGACGAAGACTACAAAAAATGCGACTGACTT
TTTCTCTTAATGACTGCAACAATAAAAGACAATACATCCTACGATTAAAA
TATTCGATtcacaagaaaaacaaaaacaacaacttgTAACCAATGAGGTC
GACCTCTTATAATAGTTTTTGATTGGTTAATGTAAGTGTACACTCGATCA
CTCGATCACTCATTGGACAGCGACTGTAGATAATCGTTATTTGATTGGAC
GAAAATCCCGAACACTTATCATTGATTGgttgaacatttttttgttaCAG
ATTATGCAATTTTTGGCGACACGATTTTTATTGTGACTCCTTTTTCGTGC
GTTTTCAAATGACAATCGAAATGTCAACAACTTtgagaattttaagaaaa
agctATTTTTTGATACCTTTTGTAGTCTGGCATTTGTTTATGATGACTTT
AGAGTATTTTTTCGTGCGGAAATGAAAATCCCTTAAGCCATACACCACCG
AAATTTTAAGAGATAATTTCACATTTCCTTTTAGCATATTCACGCGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016832XLOC_016832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029491-exon-sc0000749-1491911889:156350..157148TCONS_00029491-exon-sc0000749-1491911889:156350..157148Clytia hemisphaericaexon
TCONS_00029491-exon-sc0000749-1510915933:156350..157148TCONS_00029491-exon-sc0000749-1510915933:156350..157148Clytia hemisphaericaexon
TCONS_00029491-exon-sc0000749-1575043694:156350..157148TCONS_00029491-exon-sc0000749-1575043694:156350..157148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000749supercontigsc0000749:156350..157148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.136169	0	0.0810911	0	0.309236	0.144751	0.0506719	0.0627653	0.304608	0.200237	0.519893	1.20442	0.170724	0.256498	1.4445	1.2955	0.8949	0.668891	2.20927	1.10596	0.413675	0.626818	0.322804	0.864285	0.412263	0.175991	1.40157	1.49598
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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