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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029404 ID=TCONS_00029404|Name=TCONS_00029404|organism=Clytia hemisphaerica|type=transcript|length=241bp
TAAATTAAAGAAGAAATAGAGACTTCAACATGGACGGCTTTGAAATGGAG
CATGATCAATTGTTGGCTGACATTCTCCAAGATTATGATTTAGTTCCGAA
CTTTCCAACACATATCGATGGGAAAATGCTTGATCAAATTTGGACACATA
AGGAATTGGTGCACGAATATGGTATTGAAGTTATTCGTAGATGTATGAAC
TTATCCGATCATGATGGAATCAAATTATCGCTGACTTTGCT Run BLAST on NCBI transcript from alignment at sc0000747:59369..68060- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029404 ID=TCONS_00029404|Name=TCONS_00029404|organism=Clytia hemisphaerica|type=transcript|length=8692bp|location=Sequence derived from alignment at sc0000747:59369..68060- (Clytia hemisphaerica)
TAAATTAAAGAAGAAATAGTAAGTATTTACTTTCATATTTGCTTAGCAGC
TCTGCTCCTCAGAACTGTTTAAAGCCTGTTTTGCCCCTTCATACTCATTA
ATTGCACTGAATTTGATTGTGGCATTTTTTTTGCTTTTTTTTTTTTGCCC
TTCGGATTTATGCACTACGGGCCACTGAATTCTGTTGAGGCATCAGTTGT
GTACGTATCGACCAGCTTTAAAGAAACTCACTTGCATTGTCAGTGATTAC
AATACCAAACTGCATTGTCAGCTCTTACAAATATCTTATTTAGATACATT
AGAAAATATTTCAGTCTCAGAGATTTACATATAGTCTTTTAGTTTTGAAA
TGATATCCATTGAATCATACCGTGTGTCGATAGGAGGCTTTGCCTACATA
GCTCAGAGAAATGTGAAGTCAATTTCTAAGTCCATTTTTATCGGCTCCAA
ATTTTCTAAAAATGCTTTTTCTCGATCATTGAAACCCGTTAGATTCATAG
CACTTTTTACACTTTTAGTTTTTGCAATCCCTAAGTCTTACGAAACAATT
GAAATTCAAACACCTCTTAACCTCGTGCATTTTTCAAAGAATGGAATGTT
TGTTCAGTATCCAAATCTAGGGTATAATTTACCAGAGCCAGTTCTGTTTA
CTTTTAAAGTCAACTATACATTACTATTGTCAGGTGATATAGAACTTAAT
CCAGGTCCACCACAGGAAGAGATAAAAAGTATTTAAGGTTCTTTTCATCA
AGGAAATTCAAAGTTTGGCCAGACTGCTGGTATACAATGTTCGGGCAATT
GTTTTTTTGCCATTTGCTATGCACAGCTTAGAAAATTATCACTTTGGAAG
ACTCATGATTTGGATTATGTTTTAAATCAAGGGGATCTAAATTTTTAAAA
TCTTGGCATCACTAGACAATCACCATTAATTGAAGAATTCCAGAAAGTTA
TTGCAGTTGGAAATATCTGTTCACTAGATTTCAATATCGTTGAAGGATAT
TTGGAAAACGAAGGTATTTCAGTAAATTTTGTTAATGAAGAACTTTTGTT
GCAACATTCTGGTGCCGTCTTAGTAATAGCTGGAAATTGTTTAGGTGTGC
TCCATTACAATGAAAAATATTTTGTTTTTGATTACCATAGTAGAGATGTA
AAGGGCCCTCAAGTTCCTGGTGAAATCGGTGCGTCAGTACTTTTGCAGTT
TGGAAATATTACTGAAATAAAGAATTACATAAGATCTGAGTATAGGGCAA
ATTTGTTTAATGTCATTTATTTGAAAACCAATTTTCACGCATACGAAAAT
ACCAAAAGGGTGATTTCTAAAGATGTACTATGTTGGCAAAAAAAGCTTCG
CGTAAAAGAAGGTTTGAAGAACTTAGAGGTAGTGAAAAACACGAACACCA
AAAAGAAACGATGCGCAAAACTGCAAAATCTTTACGTGAATTGAATAAAG
GATCAGAAAAACATGAACAGCAAAAAGAAAAGATGCGGCAAGTTGCAAAA
TCCTCTTACATTAACAACAAAAAACTTAATTCAGGAAAAAGGGTTGAGAA
CTTCAAGCAGAAAAAACAGGAGGGTCCTTCTTACATCTGTGTAATGTGTA
ACCGCAGTATGTTTAAAAAATCTGTGTCTGGTTTTTATGAACAAAAGTAC
TCATTGATCAACTTTGAAGAAATAGAAAATTTTAATCCTGTAACCTCGTT
CGATGGTAACTTCCATGTATGCACAACCTGTCATAGAAAATTAATGAAGG
GAGAAATCCCATGTCAGTCTATTACTAACAAGCTTCAAATTTTTGATCTC
CCAGATAATCTAAAACTTCTAAATGATATACGAAAACTGAAAAGAATTTT
AGTGGCTCAAAGAATTTTATTTTCTAAAGTTATGATAATGCGTAAAGGAG
AATTCCCTAAATTGCAAGGTGTAATATGCAATGTCCCCATTGAAACACCA
GGTGTATGCAAAGTACTTCCTAGAGGAAGTGATAGTAGTGGTGTAATAAA
TGTTGAATTAAAAAGAAAGATATCCTAGCTACAAAAACCCTGTTATTTCT
CAGCAAGCAAGACGACAAAAAGTTTTTGAAACTTTGGACTTTTTAGTGAA
TAATAATCCTTTGTATCATGATATAGATATTGATATGTCAATCATCGACC
AAGTAACTAATGATGAATATGTTGAAAGGGTTTCATCAAATAATAATTCC
GTATCAAGCGCTTCTTCCAATGATATAAGATTTGTTGATGATACAACAGT
TACTTTAATTAAGCCTTTTGAAGAGCAATTAGAGAATGAATTTGATTCTG
ATGATCCACTCAGTGTGTATCGAACACCAACATGTGAAACGGTTATTGTA
TCAGAAGTGCCAAACATTATTTTAGATGACGAAAATGCAATTTTAGCTCC
AGGTAAAGGTCAAACCCCCAATTCATTAACACAAGATGAGTTCTGTGAAG
AGCTAGCCTATCCTCATCTTTTTCCTACTGGGAAATTTGGTTATAACGTA
GAGCGAGATATAAAATTGTCGCCAACAAAGTACTTTAATTAGCGTCTTTT
AAATTACACTCAAAAGTTTGCTTTGGATTCAGATAACATTTTTTTGCTCA
CAAAACTTTACTGCAGCTTAATCTTAGAAGTAAGATCAATATTGCAATGA
GAATTTCAAATTCCAACTTGACTGCAGAACTGTTAACAAATAATTTTAAT
GATACAATTCAAAATTGTGTAGCATCTGATAATGCATACAAGTTTATAAG
TACTATAAAAGTAACCCCTGCATACTGGCAACATATTTTATCTGATGTTC
TTGCAATGGTTAAACAACTTGGTGTCCCAGCATACTTTATGACTCTCTCT
TGTGCAGATTTACGATGGGAGGAATTTGTTACTATTATCAGACAATTAAG
CGGGGATGCTGATACTGATCATGAACTTCTTGATTACCAATCTAGATGTG
CCCTACTTAATAGCAATCCTGTTGTGCTTGTGCGTCAATATCAATATAGA
AAAGAGTTGTTTTTCAAAGAGATTATAATGGACGGCCAACTTGGAAAAAT
TTCATACTATATGCTAAAGATGTCCCAAAACTTGAAGAACGGAAAAGAAA
AGTATATTGATCACATAGATAGTGTTATTTCTGCTAATGTTCCTGATAGA
GAAGAAAGTCCTGAGTTATGGAATTTAGTCAATAAATATCAAATAAACTC
CCATTCAAGATTGTGTAGTAAATATCGCAAAAATGAATGCCGATTTCAAT
TTGGAAAACTTTTCTGCAAGCGTACTATTTTGTCTGAACCGCTTCCTGAA
GGGTTACCTGAAACTGAAAAACATGACATTTTGGTTGCTAGAAATAATGT
GATCCAAACTGTTCAAGAATTTATAGATATAAATTTGAATCCTAAAAAGA
GAAACATTTTGGATCCTGATAAGCCTGAGTATATTGAAATTGGATCTATT
GATACAATTTTGTCTTCTTTAGGGTTAAATTATGAAACGTATGAATATTA
CTTATCAATCTCACCAGACAAAGATCAGCATTTGTTTCTAAAACGTGACC
CATATTCTTGTTTTGTCGACAATTATTTTGCAGAAGGCCTCCTAGCATGG
GAGGCCAACATCGATATCCAACCAGTGTTTAATGCATACAGGGCAGTTAC
ATACATGTGTGCCTATTCTCAACTTCAGTTCAGAAGCAGCCAACGAGCCC
ATTTTCCTGAAATATCTGTTCCCTTTTCCAGGAGAGAGTGTTTTTTGTAA
AATGGGGAAACAGATCCGATTTTCTAGGAAAAACTTTTTCTTTAAAACTA
TCTGTTTCCCCGCTCCAGCTGATGACGTCATTAGAGAGAAACAGATCAAT
ATTTCTAGGAGATGAAATAATAAATTGGGAAACAGATATCTGTTTCCAAA
AAAGATGATATTGCATTGGAAACAGATTAAATTTTCTGGGGGAAAACAGA
TATCAATCACAAAAACCAAGGGAAACAGATAGAAATTTCCAGGAGAGGAA
AACAGATATCCTATCCTTATAAGGTTGGGAGAACAGATCAAAATTTTAAT
TCTGAAAATTGTGGAAACAGACCAAATTTTCTAGGGAAGATACTTTGAGA
TTAAAAATTTAGGTTTTGAGGAGAAACAGATCTTCATTTTTAGGAATAAG
AATTTTGAAACTTTTGGCCAACAGATCAAATTTTCCAGGAAGGCTATGTC
TGGGAAACAGATGTTTAAAAAAAGGTCCTCGCTGGATGCTTTCGTCAGTT
GAGCTACAATCTGACAATGTCTGTGTGTCTGTCTGTGTGTGTGTGTCTGT
CTGTCACAAAAACTTTAGGGCAGCCTGGAGACTTCAAAAATGCTTCGATT
TGGCTGAAATTTGGCACACTTGTTCCTTGGGTGAATATCTGGGGGTGTTA
TTTTCATTTTTTAAAAATTTTGATTTTTGGGGCCTGGGACGAGTTTTTCG
TCAAAACGAGGCTAAAACTTTGGGGAAGCCTGGAGACTTTAGAAATGGTC
AGATTTGGCTGAAATTTGGCACACTTGTTCCTTCGGTGAATATCTGGGGG
TATTTTTTTTATTTTTTGAAAATTTTGATTTTTGGGGCCTAGGGGCGAGT
TTTTCGTCAAAACGAGGCTAAAACTTTGGGGCAGCCTGGAGACTTCAAAA
ATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCC
TTGGGTGAATATCTGGGGTTCTACAATTGGGCCTATGAATAGTTTGAAGG
CACTGAAGTTGAGCCCAGTGCGTTGCGCACGTTCGACTATTTTTCAAAAA
GTGAAGATAAGTGTTCAACTGCAATGCAAGAAGCATTGAAGCAGGCCAAA
GATTCAAATGACAGTCAGTTTGAGCAAATGTCTAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTTCAAGTCAAAAGAAGAAATTGAGGAATTGCCTGAGGATTCTGATGATC
TTTTCAAACGAAATATGTTAAACAGATATATTGACCGCCCAAACACAGGA
AAATTTAATACTATGTGTTATGCCACATTCTGTTCAAACTATACATTAGA
CACAAGAAAAAATACAAATGATGAAAATGATTGGCAGCCTACTGTACTAG
ATGATTCAACAAGTGCAGTGAATCATGAAGAACCCCAAACACTTCCAAAA
TCAGCCAAATTACTCAACAGTAAGGAAAAACTCAAGCTTCGTAAAGTTCC
AAAGGTTTTGATGTACTACACTCCTAACAAAAATAAACAGCCAGAAAAAT
TTTCCCACAATATTCTCATGTTGTTTTACCCATTTAGATCAGAAGAAAAT
GATTTGAAACTTGATGGTTCATATGTACTGAAGCTCAATTTAGACGAAGT
CAATGCAGTTGTACACCAGAACAAGCAAACTTTTGAACCTGATAGTCATC
TTGTTGATTTAGTACTTCAAAACTATCGCAATGACCTTATGCATAATCAA
GATGCCTTTGCTCAACAAGAAAATGATGAAGTGCAAGATTTAATGAGCAA
CTCATCAGACAGTGAAAATGATGATGAAAGTCATGATATCAAGCAAAACT
TTGCACCATTTACTCAAACAGTGCATGGCTTGCAAACTGATGACCAAATC
AATACCCATATATAAGATCTTTAAATTCTAAGCAAAGAGATATTTTTGAT
GTAGTACTAAATTGGGGGAAATGTATGTGCAAAATTCCAAGTCCAATAAT
CCTTTACTACTAGAACCATTGAGAATATTTTTAACAGGTGGTGCGGGCGT
AGGAAAATCTCATCTAATTAAATGTATTTACAATTGTTTTTCAAAAGTCC
TAGCATATAAAAGTGACGAGCTAGAGAAGCCACGTATTATTAAATTGGCT
CCAACTGGTATAGCAGCTTTCAATATATCTGGCACCACAGTACACACAGG
ATTGAGTATTCCAGTTGGAAAATTCAGAAATATGGCTGACAAACAAAGGA
CTACCATTAGAAATAATTTACATCATGTAAAATTGATAATAATTGTTGAA
ATATCTATGATTTCATCGCAACAGCTTTTGAACATCCATACAAGATTATG
TGAAATTTTTGGTGTAAATGACAACACACCATTCGCAGGGAAAAGTATCT
TTGTTTGGGGAGACCTCTTTCAATTACCCCCAATATTTCAAAGTCCAGTA
TTTTCAACTGAGGGACCTATTATTGGTGCATTCAAATTATGGCACCTATT
CAAACTAGCTGAATTAGATGTGATTATGCGTCAAAAGGATGACTCTGACT
TCATTGATCTCTTGAACAATGTAAGAGTAGGTGAATTGGATAGTAATGAT
GAAAGTATGATTAAATCTAGACTGTTAACACGAGAACACCCTGATTATCC
AATAGAATCATTGCATTTGTTTGCAGAAAATGCTTCACTCCATCTTCACA
ATATTCAAAGATTAGATACTCTGTCTTCGGAAACAATAAGTGTAGAAGCT
ATCGACGTTTATCCAAGGGGTGTTACTGAATCTCAAATTACCAAGGTTAA
GAACCTGCCACTTAACGATACAGGTGGCTTATCAGTTCTATTTGATTTGA
AAATAGGAGCAAGAGTAATGCTAATTAGTAATATTGATATAGAGGATAGG
TTGATCAATGGTCAATTTGGAACCGTCACTGACGTAAAATTCAGAAACAA
TAAAGCAGAGCTATTTTATGTTAAACTAGATGATAAGACGGCTGGAATAA
AAGCTCAAAGTAAAGACTAATATGCTAAGGCCACTGAAACTGTTCCCATT
GAAAAGAGTGAGGTAAATTTTCCCTTTGACAAAAAACCAATACACTTCAC
CTATCATTTCTCGGACACAATTTCCTCTTAAGCTAGCTTATGCTTGCACA
GTGCACAAAGTTCAAGGATTGACTTTGGATTCAGTAGTCGTTAGTTTTGA
CCTTGCAAGGCAAAGAAAGTTCAATGCTGGTTAAATGTATGTTGCAATGA
GCAGAGTGAAAGATTTAAATGGTTTGTGCTTTACTGGTCAATATCGACGT
AGTGCTTTTGTCTGTAGTGATAAAGTTAGTGAAGAATACACACGATTCCG
TCAGAACAAAGTTGAAAGAGTTGCAGATATGATGAGGTGCAGTTGTAATT
TAAATGTTTGCCTATTGAATGTAAGATCTTTAAAACGACATGCAGTTGAT
ATTCAAAAGGACAGATTTTTGTATGAAATGATTTGTCTGACACAGATGAG
TTATGAGCATTCTGAGGAAGACAAACAAAGTATTCATGAAAAGCTTCCTT
ATTATATGGGGCCCCCAGCGGTTTGCGTGATTGCGTGAATGGGCATTTTT
GGCTGCGTGAATGCGTGAAAATTGAAAAAAAATGCGTGAATATGTGAATT
AAAAAAACTTGCGTGAACGTGAAAATGTACTTTTTGATTGCGTGAATGCG
TGAATCTGGGCTATTTTGTGCGTGAATATGTGAATTTCCCCTTTTTTCCA
CCAATTATGTGCATTTTTCCCGATTTTCGAATGTTTCCCCGATTTTTCAC
AAAAAAACTTTCCGATTTCTGAAAAATCGGGTTATTGCGTGAATTTCGAA
ATAAAATTGCGTGATTGCGTGAATTGAGGATCCGCTGGGAGGCCTCTTAT
ATTCTAGTCATAATATTGACCAGCATAAATTCAACAGTGTTACTGTCTGT
CATTCTCCTTCTTTTATTGACATTGATGAGTATGATCATTCATCATGCTT
TTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCATCATGCTTTTCTCTTGTAAAATTTAGAAAAGCTGAAT
TTACTGAAAAGGAATTTTGTGTTTTGGTTCTCTATAAAAGTTCAAGAATT
CAACGTGATGTGTTTTGTTACAATCTTGCTCAATTTATTGAAAGATACAC
AATTGATATCATATTGTAGGAGACTTCAACATGGACGGCTTTGAAATGGA
GCATGATCAATTGTTGGCTGACATTCTCCAAGATTATGATTTAGTTCCGA
ACTTTCCAACACATATCGATGGGAAAATGCTTGATCAAATTTGGACACAT
AAGGAATTGGTGCACGAATATGGTATTGAAGTTATTCGTAGATGTATGAA
CTTATCCGATCATGATGGAATCAAATTATCGCTGACTTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029404-exon-sc0000747-1575043694:68043..68060 | TCONS_00029404-exon-sc0000747-1575043694:68043..68060 | Clytia hemisphaerica | exon |
| TCONS_00029404-exon-sc0000747-1575043694:59369..59591 | TCONS_00029404-exon-sc0000747-1575043694:59369..59591 | Clytia hemisphaerica | exon |
| TCONS_00029404-exon-sc0000747-1510915933:68043..68060 | TCONS_00029404-exon-sc0000747-1510915933:68043..68060 | Clytia hemisphaerica | exon |
| TCONS_00029404-exon-sc0000747-1510915933:59369..59591 | TCONS_00029404-exon-sc0000747-1510915933:59369..59591 | Clytia hemisphaerica | exon |
| TCONS_00029404-exon-sc0000747-1491911889:68043..68060 | TCONS_00029404-exon-sc0000747-1491911889:68043..68060 | Clytia hemisphaerica | exon |
| TCONS_00029404-exon-sc0000747-1491911889:59369..59591 | TCONS_00029404-exon-sc0000747-1491911889:59369..59591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000747 | supercontig | sc0000747:59369..68060 - |
Blast
The following BLAST results are available for this feature:
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