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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029365 ID=TCONS_00029365|Name=TCONS_00029365|organism=Clytia hemisphaerica|type=transcript|length=4829bpRun BLAST on NCBI protein sequence of TCONS_00029365-protein >TCONS_00029365-protein ID=TCONS_00029365-protein|Name=TCONS_00029365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1015bp ECLPMYTRKSREQRARLGQQSQAPINCYRRHLTIQTGTLWIDGPRDSDNLRun BLAST on NCBI transcript from alignment at sc0000744:99415..140223- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029365 ID=TCONS_00029365|Name=TCONS_00029365|organism=Clytia hemisphaerica|type=transcript|length=40809bp|location=Sequence derived from alignment at sc0000744:99415..140223- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000744:99415..140223- >TCONS_00029365 ID=TCONS_00029365|Name=TCONS_00029365|organism=Clytia hemisphaerica|type=CDS|length=60960bp|location=Sequence derived from alignment at sc0000744:99415..140223- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029365 vs. Swiss-Prot (Human)
Match: UNC79 (Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=4) HSP 1 Score: 159.458 bits (402), Expect = 8.583e-39 Identity = 175/672 (26.04%), Postives = 312/672 (46.43%), Query Frame = 3
Query: 1086 PASELFLGIPDTTEELLVETNQQNCQRCKMTLFNHSEEIINSCLISLLTYVHMDPERSASFIVDLVKSVVWKAQVMPTSGTCKLPKLGLTNTASIAQQFLRCVFAKMAQSRLFPELFGAEKYDEDFFMIITTVLTEFPFLSLLEPIKLILQDFMQPESQINKERYMI--LRNLSGYIEKM-VDGKHIAHKEWNSLKSTFQSFFSNVENLLPKGRDMDCLLNIMTLLL-THQHRSVKFLMEELENAMTFIIKHCKFSVQALYNLTSSTVVS-SKEKDQSKLSRDQMKLTRKVAFLLANTLAGKGSLPEVSLTKLVQFFCHDAGTKYHFDDVNNE---LTPNTFKPRAVEC--------LDINSSSEIIEYLKNPCKRIIKELNDNENYNYFSNLKLALYQFVSVYLNNIDSKILRDSRFYYKLSAVLLTEISQERQQAASISEMHEHATHFRIYSWLLLGAINHSVVMETPISRL--IPLVKAAYISEYLNVVFDVLRKELSEDVLKKSKTRAMLQLSFYLMQIWNVYIELHYEGMENQDNQSIHPSANLKPITVIKEFWSKITPSLYSLLKHSQKMKLESIPL-FLQVVENLSLHCPKTFSQLYPMWKPLLEIYSNEVPSSARQRIKEFDNLPSER--RNVPRGDSLSYWVSDIRKKLWNAERLTKGKLAQV 3038
PA E F T E+ V T++ C C L + EE + ++ L T++H+ P+ +A ++D+++SV A S + + N A +A+QFLRC+F ++A + +FP+LF + D F + + L +F LS + + +L+ + + + MI L N++ ++E + +D W ++ + FQ+FF+ + +LP +D L IM LL + + L+E ++F+I++ F++ L L + +KE RD+ L+R V L L K LP+ +L LVQF C DAGTK + ++ + A+EC LD + + LK+ K + L+++ + +LK+ L Q ++ +I RD++ + L S +Q E E +H R+ SWLLLG++ H+ V S IPL ++++++L V+ ++ VL L +F Q+W VY E Q+ +A L + EFWS++TPS+ L+ H++ M +E + L + ++E L F +L PMW P+++ + + + R++ N + R +P S ++ +RK L + T+ K+AQV
Sbjct: 1991 PAPEEF-----TDEQPTVMTDK--CHDCGAILEEYDEETLGLAIVVLSTFIHLSPDLAAPLLLDIMQSVGRLASSTTFSNQAE-SMMVPGNAAGVAKQFLRCIFHQLAPNGIFPQLFQSTIKDGTFLRTLASSLMDFNELSSIAALSQLLEG-LNNKKNLPAGGAMIRCLENIATFMEALPMDS---PSSLWTTISNQFQTFFAKLPCVLPLKCSLDSSLRIMICLLKIPSTNATRSLLEPFSKLLSFVIQNAVFTLAYLVELCGLCYRAFTKE-------RDKFYLSRSVVLELLQALKLKSPLPDTNLLLLVQFICADAGTKLAESTILSKQMIASVPGCGTAAMECVRQYINEVLDFMADMHTLTKLKSHMKTCSQPLHED---TFGGHLKVGLAQIAAM---DISRGNHRDNKAVIRYLPWLYHPPSAMQQGP---KEFIECVSHIRLLSWLLLGSLTHNAVCPNASSPCLPIPLDAGSHVADHLIVILIGFPEQSKTSVLHMCS----LFHAFIFAQLWTVYCEQSAVATNLQNQNEFSFTAILTAL----EFWSRVTPSILQLMAHNKVM-VEMVCLHVISLMEALQECNSTIFVKLIPMWLPMIQSNIKHLSAGLQLRLQAIQNHVNHHSLRTLPGSGQSSAGLAALRKWL----QCTQFKMAQV 2621 The following BLAST results are available for this feature:
BLAST of TCONS_00029365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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