TCONS_00029332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029332
Unique NameTCONS_00029332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029332 ID=TCONS_00029332|Name=TCONS_00029332|organism=Clytia hemisphaerica|type=transcript|length=308bp
ATGCATGCTGAGTGCGGTGTTTAGCTCTAAACCCGCAGAGTCTTGAATCG
AAAATGTCATCGAAGTAGGAAGAGAGTTGGTTATGAATTATTCTCtcata
aattttagaaaaagctGGTAGAATACTAATTGGTCGataatttttcttca
gaaaCTTATCTTCCTTTTTGTAAACAGGAGTAACCCTTGCCTTCTTAAGA
CTTTGGGAGAATTTGCATGAATTGAAAGCAAGGTTTATGAGTTTTGATAA
TGGTTCTGACAGTATATCAGAAaccatttttattaatttcactGAGAAAG
GACCGCTG
Run BLAST on NCBI

protein sequence of TCONS_00029332-protein

>TCONS_00029332-protein ID=TCONS_00029332-protein|Name=TCONS_00029332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
SGPFSVKLIKMVSDILSEPLSKLINLAFNSCKFSQSLKKARVTPVYKKED
KFLKKNYRPISILPAFSKIYERIIHNQLSSYFDDIFDSRLCGFRAKHRTQ
HA
Run BLAST on NCBI

transcript from alignment at sc0000737:158128..158435

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029332 ID=TCONS_00029332|Name=TCONS_00029332|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0000737:158128..158435 (Clytia hemisphaerica)
CAGCGGTCCTTTCTCagtgaaattaataaaaatggtTTCTGATATACTGT
CAGAACCATTATCAAAACTCATAAACCTTGCTTTCAATTCATGCAAATTC
TCCCAAAGTCTTAAGAAGGCAAGGGTTACTCCTGTTTACAAAAAGGAAGA
TAAGtttctgaagaaaaattatCGACCAATTAGTATTCTACCagcttttt
ctaaaatttatgaGAGAATAATTCATAACCAACTCTCTTCCTACTTCGAT
GACATTTTCGATTCAAGACTCTGCGGGTTTAGAGCTAAACACCGCACTCA
GCATGCAT

Coding sequence (CDS) from alignment at sc0000737:158128..158435

>TCONS_00029332 ID=TCONS_00029332|Name=TCONS_00029332|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000737:158128..158435 (Clytia hemisphaerica)
AGCGGTCCTTTCTCagtgaaattaataaaaatggtTTCTGATATACTGTC
AGAACCATTATCAAAACTCATAAACCTTGCTTTCAATTCATGCAAATTCT
CCCAAAGTCTTAAGAAGGCAAGGGTTACTCCTGTTTACAAAAAGGAAGAT
AAGtttctgaagaaaaattatCGACCAATTAGTATTCTACCagctttttc
taaaatttatgaGAGAATAATTCATAACCAACTCTCTTCCTACTTCGATG
ACATTTTCGATTCAAGACTCTGCGGGTTTAGAGCTAAACACCGCACTCAG
CATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016730XLOC_016730Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029332-proteinTCONS_00029332-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029332-exon-sc0000737-1491911889:158128..158435TCONS_00029332-exon-sc0000737-1491911889:158128..158435Clytia hemisphaericaexon
TCONS_00029332-exon-sc0000737-1510915933:158128..158435TCONS_00029332-exon-sc0000737-1510915933:158128..158435Clytia hemisphaericaexon
TCONS_00029332-exon-sc0000737-1575043694:158128..158435TCONS_00029332-exon-sc0000737-1575043694:158128..158435Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000737supercontigsc0000737:158128..158435 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50714	1.0478	2.02766	0	12.0751	5.34346	10.5909	9.91511	1.50909	2.2431	1.45147	0.95414	1.19102	0.494753	0.203377	1.52778	1.61323	0.275585	1.52294	1.19524	1.03888	0	1.64265	1.49341	0.769089	4.11836	4.91113	1.04826	0.795067	0.405024
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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