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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029329 ID=TCONS_00029329|Name=TCONS_00029329|organism=Clytia hemisphaerica|type=transcript|length=1947bp
AAACGAGGCATAGTGTGATTACTTTTAGCTGGGACAACGCGAGATTTACC
CATCACCAAAGAACAATGAACATAATTATCAGACGTTACAAATCTTAAGT
AATGAGAACCACTATAACCATAATAACAAGCATCAGAAAAGTGGTGTAAA
CTGATTTCAACAATTCGAGTAAAACTTCTTGCATTAAAGCAACGACTGAC
ACTGAGCACTTGTAAATTTACTAAAGATTCAACCCATTTATCCCATTGAA
TGAGATACTCGTTAGGAACTGGATCATCCCAACCGATTGAAAGCTGACAC
ACTGTCTGAAAGATAAGTCTTCCCTTAAGAATGAAAGGAGAAATCAAACC
CAAAGGATCATAGATTGAATTCAATGCTGATAACATCCCTCTACGAGATC
TTGAGAAAACATTAGAAGGAGCTTTGAACTGGAAAACATCATCTTCTAGG
GACCACAAAACACCTAGCACACGTTCAGTAGATTTGCATTTCATAAAGGC
AACATAGTCAgagtgaaattttgaagaagattcaaactttttcttcaGCA
AACTCAACCTTTTCAGAGCTAGAGGACGATTATCTGGAAAGCTAATATTT
TCGTTACGAAAGGGCAGAGGTACATGATAGTGTCCATCAATGAATTCAGA
ACGATTTTCAACAATTTCTAGAAAGTGTAAATCATCTTGAGAAAAAGATT
CGTACTCAGTAGATAACTTAGTTTCAGGAACactttcaatatcaaaaaga
ttttttagcaTAGATTCAATTCCAGAGTCTTTAACCTGTGTTTCTTCAAC
AACAAGATGGTTCGATCTACCATGATCATTAACCATGACTCTGCAACAAG
AAATAGTATCTGATGACCTTGACGAACTGATAGGTCCAACAACACACCAA
CCAAGCTTAGTTTTAAAGGCAAATGGGCCATCATCCTGACTTGGTATAAC
TTTCAAAGGTTCGATAGCTTTCAAACAATTAGCACCAATCAGAATTCCAA
CCTTTAAAGACGTTGTATTAGGAAGCTCATTTTCAATAGATTTAAGATAA
GGCCATTCTTTTATAGAGTCAGCTGTCGGAATCTCACTGGAATCAACAGG
AATATTAGGTTTACTAAAACACTTCGGCAGAGATAACCAACTACCATCAC
CAGCATGAAGACCTTTCACTCTTAATCCACAAGCCACTTGACACTTCTCA
GACTTGACAGATGTTATCGTGTTAATGCTCAATTCAGTACTTATAGTTTT
CAATGAcatcaaaaaaacaatttcgtCAGAAATAAAGCAAGCTTGAGAAC
AGGTATCAAGAAGAGTATATGTTACAATATCAGACTTTGAATGATCATGT
CGAAGAGGAACTGGTACAACACACATACTGAGATTTTTATTAGCACTGTT
ATTCAGAACTCCACATTTAACACCTCCTTTAGTACCTTTTGTTTCAGGTT
TTGATTTCGAATCATCAAACTTAGCTATATCAGGCCTTGGTCGTGGCACT
GGAGGAGAAGGTCTAACATCACAATCTGTTTTCTTAGAATCATCAGCAGG
TGGTCTACGCTCAATTCTCAAACCATGAAGAGTTGTAGGAtgtcttttgt
tacaaacaacaCAAGTTCTTCGATTTCTACACTGAGCAGATATATGGCCT
TTACCAAGACAACCAAAACACAATCTctctttcataaaaaatttgGACTT
TTCTTCAAGAGTTTTGGATCTAAATGTTGGACAAGCCTCAATATCATGGT
TGACATTGCAAGTGACacataaaaaactttttggagatTTATTATCAAAA
TACTTTCTTGGCTTAAAACTACCAGAAAAACCAGAGCTTTTGGAATCACT
TGGAAAACGCTCCTTAAGTGCTTCTTTAGAAAACAGAGGATCACTTGCAA
CTGTCATTTCCATTTCAACGaacaaaaacaaatctttaaaaCGTGGT Run BLAST on NCBI protein sequence of TCONS_00029329-protein >TCONS_00029329-protein ID=TCONS_00029329-protein|Name=TCONS_00029329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
PRFKDLFLFVEMEMTVASDPLFSKEALKERFPSDSKSSGFSGSFKPRKYF
DNKSPKSFLCVTCNVNHDIEACPTFRSKTLEEKSKFFMKERLCFGCLGKG
HISAQCRNRRTCVVCNKRHPTTLHGLRIERRPPADDSKKTDCDVRPSPPV
PRPRPDIAKFDDSKSKPETKGTKGGVKCGVLNNSANKNLSMCVVPVPLRH
DHSKSDIVTYTLLDTCSQACFISDEIVFLMSLKTISTELSINTITSVKSE
KCQVACGLRVKGLHAGDGSWLSLPKCFSKPNIPVDSSEIPTADSIKEWPY
LKSIENELPNTTSLKVGILIGANCLKAIEPLKVIPSQDDGPFAFKTKLGW
CVVGPISSSRSSDTISCCRVMVNDHGRSNHLVVEETQVKDSGIESMLKNL
FDIESVPETKLSTEYESFSQDDLHFLEIVENRSEFIDGHYHVPLPFRNEN
ISFPDNRPLALKRLSLLKKKFESSSKFHSDYVAFMKCKSTERVLGVLWSL
EDDVFQFKAPSNVFSRSRRGMLSALNSIYDPLGLISPFILKGRLIFQTVC
QLSIGWDDPVPNEYLIQWDKWVESLVNLQVLSVSRCFNARSFTRIVEISL
HHFSDACYYGYSGSHYLRFVTSDNYVHCSLVMGKSRVVPAKSNHTMPR Run BLAST on NCBI transcript from alignment at sc0000737:93903..95849 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029329 ID=TCONS_00029329|Name=TCONS_00029329|organism=Clytia hemisphaerica|type=transcript|length=1947bp|location=Sequence derived from alignment at sc0000737:93903..95849 (Clytia hemisphaerica)
ACCACGttttaaagatttgtttttgttCGTTGAAATGGAAATGACAGTTG
CAAGTGATCCTCTGTTTTCTAAAGAAGCACTTAAGGAGCGTTTTCCAAGT
GATTCCAAAAGCTCTGGTTTTTCTGGTAGTTTTAAGCCAAGAAAGTATTT
TGATAATAAatctccaaaaagttttttatgtGTCACTTGCAATGTCAACC
ATGATATTGAGGCTTGTCCAACATTTAGATCCAAAACTCTTGAAGAAAAG
TCcaaattttttatgaaagagAGATTGTGTTTTGGTTGTCTTGGTAAAGG
CCATATATCTGCTCAGTGTAGAAATCGAAGAACTTGtgttgtttgtaaca
aaagacaTCCTACAACTCTTCATGGTTTGAGAATTGAGCGTAGACCACCT
GCTGATGATTCTAAGAAAACAGATTGTGATGTTAGACCTTCTCCTCCAGT
GCCACGACCAAGGCCTGATATAGCTAAGTTTGATGATTCGAAATCAAAAC
CTGAAACAAAAGGTACTAAAGGAGGTGTTAAATGTGGAGTTCTGAATAAC
AGTGCTAATAAAAATCTCAGTATGTGTGTTGTACCAGTTCCTCTTCGACA
TGATCATTCAAAGTCTGATATTGTAACATATACTCTTCTTGATACCTGTT
CTCAAGCTTGCTTTATTTCTGacgaaattgtttttttgatgTCATTGAAA
ACTATAAGTACTGAATTGAGCATTAACACGATAACATCTGTCAAGTCTGA
GAAGTGTCAAGTGGCTTGTGGATTAAGAGTGAAAGGTCTTCATGCTGGTG
ATGGTAGTTGGTTATCTCTGCCGAAGTGTTTTAGTAAACCTAATATTCCT
GTTGATTCCAGTGAGATTCCGACAGCTGACTCTATAAAAGAATGGCCTTA
TCTTAAATCTATTGAAAATGAGCTTCCTAATACAACGTCTTTAAAGGTTG
GAATTCTGATTGGTGCTAATTGTTTGAAAGCTATCGAACCTTTGAAAGTT
ATACCAAGTCAGGATGATGGCCCATTTGCCTTTAAAACTAAGCTTGGTTG
GTGTGTTGTTGGACCTATCAGTTCGTCAAGGTCATCAGATACTATTTCTT
GTTGCAGAGTCATGGTTAATGATCATGGTAGATCGAACCATCTTGTTGTT
GAAGAAACACAGGTTAAAGACTCTGGAATTGAATCTAtgctaaaaaatct
ttttgatattgaaagtGTTCCTGAAACTAAGTTATCTACTGAGTACGAAT
CTTTTTCTCAAGATGATTTACACTTTCTAGAAATTGTTGAAAATCGTTCT
GAATTCATTGATGGACACTATCATGTACCTCTGCCCTTTCGTAACGAAAA
TATTAGCTTTCCAGATAATCGTCCTCTAGCTCTGAAAAGGTTGAGTTTGC
tgaagaaaaagtttgaatcttcttcaaaatttcactcTGACTATGTTGCC
TTTATGAAATGCAAATCTACTGAACGTGTGCTAGGTGTTTTGTGGTCCCT
AGAAGATGATGTTTTCCAGTTCAAAGCTCCTTCTAATGTTTTCTCAAGAT
CTCGTAGAGGGATGTTATCAGCATTGAATTCAATCTATGATCCTTTGGGT
TTGATTTCTCCTTTCATTCTTAAGGGAAGACTTATCTTTCAGACAGTGTG
TCAGCTTTCAATCGGTTGGGATGATCCAGTTCCTAACGAGTATCTCATTC
AATGGGATAAATGGGTTGAATCTTTAGTAAATTTACAAGTGCTCAGTGTC
AGTCGTTGCTTTAATGCAAGAAGTTTTACTCGAATTGTTGAAATCAGTTT
ACACCACTTTTCTGATGCTTGTTATTATGGTTATAGTGGTTCTCATTACT
TAAGATTTGTAACGTCTGATAATTATGTTCATTGTTCTTTGGTGATGGGT
AAATCTCGCGTTGTCCCAGCTAAAAGTAATCACACTATGCCTCGTTT Coding sequence (CDS) from alignment at sc0000737:93903..95849 >TCONS_00029329 ID=TCONS_00029329|Name=TCONS_00029329|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000737:93903..95849 (Clytia hemisphaerica)
CCACGttttaaagatttgtttttgttCGTTGAAATGGAAATGACAGTTGC
AAGTGATCCTCTGTTTTCTAAAGAAGCACTTAAGGAGCGTTTTCCAAGTG
ATTCCAAAAGCTCTGGTTTTTCTGGTAGTTTTAAGCCAAGAAAGTATTTT
GATAATAAatctccaaaaagttttttatgtGTCACTTGCAATGTCAACCA
TGATATTGAGGCTTGTCCAACATTTAGATCCAAAACTCTTGAAGAAAAGT
CcaaattttttatgaaagagAGATTGTGTTTTGGTTGTCTTGGTAAAGGC
CATATATCTGCTCAGTGTAGAAATCGAAGAACTTGtgttgtttgtaacaa
aagacaTCCTACAACTCTTCATGGTTTGAGAATTGAGCGTAGACCACCTG
CTGATGATTCTAAGAAAACAGATTGTGATGTTAGACCTTCTCCTCCAGTG
CCACGACCAAGGCCTGATATAGCTAAGTTTGATGATTCGAAATCAAAACC
TGAAACAAAAGGTACTAAAGGAGGTGTTAAATGTGGAGTTCTGAATAACA
GTGCTAATAAAAATCTCAGTATGTGTGTTGTACCAGTTCCTCTTCGACAT
GATCATTCAAAGTCTGATATTGTAACATATACTCTTCTTGATACCTGTTC
TCAAGCTTGCTTTATTTCTGacgaaattgtttttttgatgTCATTGAAAA
CTATAAGTACTGAATTGAGCATTAACACGATAACATCTGTCAAGTCTGAG
AAGTGTCAAGTGGCTTGTGGATTAAGAGTGAAAGGTCTTCATGCTGGTGA
TGGTAGTTGGTTATCTCTGCCGAAGTGTTTTAGTAAACCTAATATTCCTG
TTGATTCCAGTGAGATTCCGACAGCTGACTCTATAAAAGAATGGCCTTAT
CTTAAATCTATTGAAAATGAGCTTCCTAATACAACGTCTTTAAAGGTTGG
AATTCTGATTGGTGCTAATTGTTTGAAAGCTATCGAACCTTTGAAAGTTA
TACCAAGTCAGGATGATGGCCCATTTGCCTTTAAAACTAAGCTTGGTTGG
TGTGTTGTTGGACCTATCAGTTCGTCAAGGTCATCAGATACTATTTCTTG
TTGCAGAGTCATGGTTAATGATCATGGTAGATCGAACCATCTTGTTGTTG
AAGAAACACAGGTTAAAGACTCTGGAATTGAATCTAtgctaaaaaatctt
tttgatattgaaagtGTTCCTGAAACTAAGTTATCTACTGAGTACGAATC
TTTTTCTCAAGATGATTTACACTTTCTAGAAATTGTTGAAAATCGTTCTG
AATTCATTGATGGACACTATCATGTACCTCTGCCCTTTCGTAACGAAAAT
ATTAGCTTTCCAGATAATCGTCCTCTAGCTCTGAAAAGGTTGAGTTTGCt
gaagaaaaagtttgaatcttcttcaaaatttcactcTGACTATGTTGCCT
TTATGAAATGCAAATCTACTGAACGTGTGCTAGGTGTTTTGTGGTCCCTA
GAAGATGATGTTTTCCAGTTCAAAGCTCCTTCTAATGTTTTCTCAAGATC
TCGTAGAGGGATGTTATCAGCATTGAATTCAATCTATGATCCTTTGGGTT
TGATTTCTCCTTTCATTCTTAAGGGAAGACTTATCTTTCAGACAGTGTGT
CAGCTTTCAATCGGTTGGGATGATCCAGTTCCTAACGAGTATCTCATTCA
ATGGGATAAATGGGTTGAATCTTTAGTAAATTTACAAGTGCTCAGTGTCA
GTCGTTGCTTTAATGCAAGAAGTTTTACTCGAATTGTTGAAATCAGTTTA
CACCACTTTTCTGATGCTTGTTATTATGGTTATAGTGGTTCTCATTACTT
AAGATTTGTAACGTCTGATAATTATGTTCATTGTTCTTTGGTGATGGGTA
AATCTCGCGTTGTCCCAGCTAAAAGTAATCACACTATGCCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029329-exon-sc0000737-1491911889:93903..95849 | TCONS_00029329-exon-sc0000737-1491911889:93903..95849 | Clytia hemisphaerica | exon |
| TCONS_00029329-exon-sc0000737-1510915933:93903..95849 | TCONS_00029329-exon-sc0000737-1510915933:93903..95849 | Clytia hemisphaerica | exon |
| TCONS_00029329-exon-sc0000737-1575043694:93903..95849 | TCONS_00029329-exon-sc0000737-1575043694:93903..95849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000737 | supercontig | sc0000737:93903..95849 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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