TCONS_00029301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029301
Unique NameTCONS_00029301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029301 ID=TCONS_00029301|Name=TCONS_00029301|organism=Clytia hemisphaerica|type=transcript|length=1328bp
ccccccccccccgtttattaatttttaagaatattttcagttggtaaAAA
ATAGTCCTCTTATTTTgttccaaaaagcctgattttagccaatatttacc
ttatttttgggttttcagaagtacaatttccaaccccctccgGCAATTAA
GCcccctccccccgtttatttggcacctaagagtatctCCTGCTGCCTTT
CTCCTGTTCCTCAGTGAACCAGATCAAGTACTGGCACTAGTGTAAATGAC
ATTTCCACtaattgtttttaagtttcTGTAATAAATAATATAAGGATATA
AGAAAAACgaaataatataaatatatgTTTGCTATTTTATAATAATATCA
TTACaattatttttgtcattttatctcAACTACTAGCCCATTGATTTAGC
GGCAGCTAACCACTAGCTCTAATTTGAAATCAGTCACTTTTCGTTTGATT
ATTAAAAGGTATTATATTAAGCTTTATGAATCaaataaaataacttttaa
gattttcttctctttttgcTTAAGTTTGACCTATATTAACGCAAGAAGTC
GATCCGTGGAAGTTCTCTTAGATTTTGCTATATTGACTTTTACCTTTCGT
TTGTTTCAGTGTAACaaataaataatgaaataatttgtTCGAGATGAGAT
CAGGAAAATACAAGCTAGGCGGTCCAATTGTAAAAAGAGGTTTGATTTCT
GGCAAATGCCGTGTATTGTCATGCAGATTCTACCATAAACATATAAAGGA
TTTAAAGGGACACCTTGAGCGAGCTCATAATATGACGTTGGTATCTCATG
CAAAATTACCTCCGTCACAGCTCAGTAGTGTCATACAGAAAAATAAGGGT
AAATCGTATATGAAAGGTAGGAAAATTGAACTATGTAGCCTAAGGGGTTG
CATACACTATATGCAACCTCAAACGGATCTTACCCGACATTTAAAAATCT
ACCACGCCGGTATGACGAAGAAGGAATATTATGCTAAAAGGAAACCAAAT
GAACCGTcttcaagctcggctataaggAATTTCCAATCGTTGGGTCCAGC
CGTAACTGAGGATGAGATCTTTGGAACAGATACCAACAATAGCGAGGAAA
AAGATCAAAATGTAAATAACAAAAGTAACGAAATTAGCGATGACGAAAGA
AGTGTCCTCGACTCGGATGTAACGCTTTCTTCTCCATTTTGTCCTGAAAT
CACAAGTCCTAGAAAAGaTCTGAACATCAAAACCCGTGCTCGAAGAGTCT
TACTACCGGAATTGTAATAGTGGAGGATTTTATACATTACTTactgaata
aaagaaaaattatttctgaaaGAACATA
Run BLAST on NCBI

protein sequence of TCONS_00029301-protein

>TCONS_00029301-protein ID=TCONS_00029301-protein|Name=TCONS_00029301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MRSGKYKLGGPIVKRGLISGKCRVLSCRFYHKHIKDLKGHLERAHNMTLV
SHAKLPPSQLSSVIQKNKGKSYMKGRKIELCSLRGCIHYMQPQTDLTRHL
KIYHAGMTKKEYYAKRKPNEPSSSSAIRNFQSLGPAVTEDEIFGTDTNNS
EEKDQNVNNKSNEISDDERSVLDSDVTLSSPFCPEITSPRKDLNIKTRAR
RVLLPEL
Run BLAST on NCBI

transcript from alignment at sc0000736:30789..33456-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029301 ID=TCONS_00029301|Name=TCONS_00029301|organism=Clytia hemisphaerica|type=transcript|length=2668bp|location=Sequence derived from alignment at sc0000736:30789..33456- (Clytia hemisphaerica)
CCCCCCCCCCCCGTTTATTAATTTTTAAGAATATTTTCAGTTGGTAAAAA
ATAGTCCTCTTATTTTGTTCCAAAAAGCCTGATTTTAGCCAATATTTACC
TTATTTTTGGGTTTTCAGAAGTACAATTTCCAACCCCCTCCGGCAATTAA
GCCCCCTCCCCCCGTTTATTTGGCACCTAAGAGTATCTCCTGCTGCCTTT
CTCCTGTTCCTCAGTGAACCAGATCAAGTACTGGCACTAGTGTAAATGAC
ATTTCCACTAATTGTTTTTAAGTTTCTGTAATAAATAATATAAGGATATA
AGAAAAACGAAATAATATAAATATATGTTTGCTATTTTATAATAATATCA
TTACAATTATTTTTGTCATTTTATCTCAACTACTAGCCCATTGATTTAGC
GGCAGCTAACCACTAGCTCTAATTTGAAATCAGTCACTTTTCGTTTGATT
ATTAAAAGGTATTATATTAAGCTTTATGAATCAAATAAAATAACTTTTAA
GATTTTCTTCTCTTTTTGCTTAAGTTTGACCTATATTAACGCAAGAAGTC
GATCCGTGGAAGTTCTCTTAGATTTTGCTATATTGACTTTTACCTTTCGT
TTGTTTCAGTGTAACAAATAAATAATGAAATAATTTGTTCGAGATGAGAT
CAGGAAAATACAAGCTAGGCGGTCCAATTGTAAGTAACTTGTTTTATTTT
TGGATTCTAATGAAGAATAGGCTAAACAGAGAAGAAGTCAATATCTTTAT
AGTACATGGTCTGCACTTTGCTTTGTCAGAGATACTAGGAAATGTCAGGA
ATTCGGAAAAAGAGGCAAAATATCAGGAAAAGATTTTCCTGAAATGGTGG
TGCAAAGCAGATATTTTCTTCCAGCACAAGATATTTTGTTATACTTTTTA
GGTAAAAAGAGGTTTGATTTCTGGCAAATGCCGTGTATTGTCATGCAGAT
TCTACCATAAACATATAAAGGATTTAAAGGGACACCTTGAGCGAGCTCAT
AATATGACGTTGGTATCTCATGCAAAATTACCTCCGTCACAGCTCAGTAG
TGTCATACAGAAAAATAAGGGTAAATCGTATATGAAAGGTAGGAAAATTG
AACTATGTAGCCTAAGGGGTTGCATACACTATATGCAACCTCAAACGGAT
CTTACCCGACATTTAAAAATCTACCACGCCGGTATGACGAAGAAGGAATA
TTATGCTAAAAGGTACTGTCAATTTTCAATTCAGTCCATGAACTGCTGCG
TTGATTCAGTGTTGATTGGTATTTGATCTTTTCACCTTTTTGGAGGTCTA
ATAAGTTTTGTCTTTTTTTTACGCAACGTTTATTGGAATGACAGGATCTC
AATGATTATAATCTAATGACAAAACTTCAAGAGGAGCTTTTTTTAACGTT
GTCTATGATTGTTGATTTCACTCCAAACTAACAAACACGCCTATTTATAG
AAATGTTCCCTCTGTTTCCTTTCAAAGTTAAACTATGTTAATGTGGTATT
AGAATTTCTTCATGGGAGTTAGTCTAATTTATTGCAGTAAAATTTATTTT
ACACTATCCTTTATACTACCCCATAGCATAGGGCTAACACTAATAAGTTT
TCCTTTTCACAAGAATATATGCGTAACTCCTAAATCTATTAATTGAGGTT
CAGCATTTTAAACCACTTCTCTTGTTTAGGAAACCAAATGAACCGTCTTC
AAGCTCGGCTATAAGGAATTTCCAATCGTTGGGTCCAGCCGTAACTGAGG
ATGAGATCTTTGGAACAGGTATGACAATTGTTTTGTTAAAAAGGGTTGAA
AATTCCATGTATTATATACATATCCGGTGCAAAACTTATATATTGACAAA
GCAGAAATAACAGAATAATTTGTATATTTTGGGTTGGGGAGGCAACGGCA
ATCAAAAACTCAAACCCAAAAGAAAAGTAATCGACCTCTCTGGACTCCGC
TTGTTCTTATTTCGGCAGAACTTCATATGCTTCCTACTCTCACATAAAAT
CACATTCTAGTCAAAAACGTTATATTGAAAATCTTATGTCAGTTTTTTTT
TGTTTACGTTTATTTGTATTTTTGAAAGGGCAGCTTAGAATGTATATCAC
TCCAGGAATCTGTTTAAAGCCTTCGTACCTTTCTTTTTCCTGAAGAAATA
TCTCTTCTTTGATTATAGATACCAACAATAGCGAGGAAAAAGATCAAAAT
GTAAATAACAAAAGTAACGAAATTAGCGATGACGAAAGAAGTGTCCTCGA
CTCGGATGTAACGCTTTCTTCTCCATTTTGTCCTGAAATCACAAGTCCTA
GAAAAGGTTTGTTATACAATCTTAAAATAAAATCTTTCGTTGCTTTTTTT
CGAAGCATAAAGTTGATAAATAGGTCATAATAGGTCAATCCTCACTCAAT
ATTTTTCTCTACCAGAAAGCATTACCTTATTTCCTCCTGCCAAAGTTGAA
ATCCAATGTACAATTTTTTTTTAAAGGAACTGAGCGTCATCAAGTATTTT
AAAGAAGCTCTAGTTAAGGGCTTACTGACTTATCTAGTATTATTTTTTTA
TTTACAGATCTGAACATCAAAACCCGTGCTCGAAGAGTCTTACTACCGGA
ATTGTAATAGTGGAGGATTTTATACATTACTTACTGAATAAAAGAAAAAT
TATTTCTGAAAGAACATA

Coding sequence (CDS) from alignment at sc0000736:30789..33456-

>TCONS_00029301 ID=TCONS_00029301|Name=TCONS_00029301|organism=Clytia hemisphaerica|type=CDS|length=3120bp|location=Sequence derived from alignment at sc0000736:30789..33456- (Clytia hemisphaerica)
ATCTGAACATCAAAACCCGTGCTCGAAGAGTCTTACTACCGGAATTGTAA
ATACCAACAATAGCGAGGAAAAAGATCAAAATGTAAATAACAAAAGTAAC
GAAATTAGCGATGACGAAAGAAGTGTCCTCGACTCGGATGTAACGCTTTC
TTCTCCATTTTGTCCTGAAATCACAAGTCCTAGAAAAGGAAACCAAATGA
ACCGTCTTCAAGCTCGGCTATAAGGAATTTCCAATCGTTGGGTCCAGCCG
TAACTGAGGATGAGATCTTTGGAACAGGTAAAAAGAGGTTTGATTTCTGG
CAAATGCCGTGTATTGTCATGCAGATTCTACCATAAACATATAAAGGATT
TAAAGGGACACCTTGAGCGAGCTCATAATATGACGTTGGTATCTCATGCA
AAATTACCTCCGTCACAGCTCAGTAGTGTCATACAGAAAAATAAGGGTAA
ATCGTATATGAAAGGTAGGAAAATTGAACTATGTAGCCTAAGGGGTTGCA
TACACTATATGCAACCTCAAACGGATCTTACCCGACATTTAAAAATCTAC
CACGCCGGTATGACGAAGAAGGAATATTATGCTAAAAGATGAGATCAGGA
AAATACAAGCTAGGCGGTCCAATTATCTGAACATCAAAACCCGTGCTCGA
AGAGTCTTACTACCGGAATTGTAAATACCAACAATAGCGAGGAAAAAGAT
CAAAATGTAAATAACAAAAGTAACGAAATTAGCGATGACGAAAGAAGTGT
CCTCGACTCGGATGTAACGCTTTCTTCTCCATTTTGTCCTGAAATCACAA
GTCCTAGAAAAGGAAACCAAATGAACCGTCTTCAAGCTCGGCTATAAGGA
ATTTCCAATCGTTGGGTCCAGCCGTAACTGAGGATGAGATCTTTGGAACA
GGTAAAAAGAGGTTTGATTTCTGGCAAATGCCGTGTATTGTCATGCAGAT
TCTACCATAAACATATAAAGGATTTAAAGGGACACCTTGAGCGAGCTCAT
AATATGACGTTGGTATCTCATGCAAAATTACCTCCGTCACAGCTCAGTAG
TGTCATACAGAAAAATAAGGGTAAATCGTATATGAAAGGTAGGAAAATTG
AACTATGTAGCCTAAGGGGTTGCATACACTATATGCAACCTCAAACGGAT
CTTACCCGACATTTAAAAATCTACCACGCCGGTATGACGAAGAAGGAATA
TTATGCTAAAAGATGAGATCAGGAAAATACAAGCTAGGCGGTCCAATTAT
CTGAACATCAAAACCCGTGCTCGAAGAGTCTTACTACCGGAATTGTAAAT
ACCAACAATAGCGAGGAAAAAGATCAAAATGTAAATAACAAAAGTAACGA
AATTAGCGATGACGAAAGAAGTGTCCTCGACTCGGATGTAACGCTTTCTT
CTCCATTTTGTCCTGAAATCACAAGTCCTAGAAAAGGAAACCAAATGAAC
CGTCTTCAAGCTCGGCTATAAGGAATTTCCAATCGTTGGGTCCAGCCGTA
ACTGAGGATGAGATCTTTGGAACAGGTAAAAAGAGGTTTGATTTCTGGCA
AATGCCGTGTATTGTCATGCAGATTCTACCATAAACATATAAAGGATTTA
AAGGGACACCTTGAGCGAGCTCATAATATGACGTTGGTATCTCATGCAAA
ATTACCTCCGTCACAGCTCAGTAGTGTCATACAGAAAAATAAGGGTAAAT
CGTATATGAAAGGTAGGAAAATTGAACTATGTAGCCTAAGGGGTTGCATA
CACTATATGCAACCTCAAACGGATCTTACCCGACATTTAAAAATCTACCA
CGCCGGTATGACGAAGAAGGAATATTATGCTAAAAGATGAGATCAGGAAA
ATACAAGCTAGGCGGTCCAATTATCTGAACATCAAAACCCGTGCTCGAAG
AGTCTTACTACCGGAATTGTAAATACCAACAATAGCGAGGAAAAAGATCA
AAATGTAAATAACAAAAGTAACGAAATTAGCGATGACGAAAGAAGTGTCC
TCGACTCGGATGTAACGCTTTCTTCTCCATTTTGTCCTGAAATCACAAGT
CCTAGAAAAGGAAACCAAATGAACCGTCTTCAAGCTCGGCTATAAGGAAT
TTCCAATCGTTGGGTCCAGCCGTAACTGAGGATGAGATCTTTGGAACAGG
TAAAAAGAGGTTTGATTTCTGGCAAATGCCGTGTATTGTCATGCAGATTC
TACCATAAACATATAAAGGATTTAAAGGGACACCTTGAGCGAGCTCATAA
TATGACGTTGGTATCTCATGCAAAATTACCTCCGTCACAGCTCAGTAGTG
TCATACAGAAAAATAAGGGTAAATCGTATATGAAAGGTAGGAAAATTGAA
CTATGTAGCCTAAGGGGTTGCATACACTATATGCAACCTCAAACGGATCT
TACCCGACATTTAAAAATCTACCACGCCGGTATGACGAAGAAGGAATATT
ATGCTAAAAGATGAGATCAGGAAAATACAAGCTAGGCGGTCCAATTATCT
GAACATCAAAACCCGTGCTCGAAGAGTCTTACTACCGGAATTGTAAATAC
CAACAATAGCGAGGAAAAAGATCAAAATGTAAATAACAAAAGTAACGAAA
TTAGCGATGACGAAAGAAGTGTCCTCGACTCGGATGTAACGCTTTCTTCT
CCATTTTGTCCTGAAATCACAAGTCCTAGAAAAGGAAACCAAATGAACCG
TCTTCAAGCTCGGCTATAAGGAATTTCCAATCGTTGGGTCCAGCCGTAAC
TGAGGATGAGATCTTTGGAACAGGTAAAAAGAGGTTTGATTTCTGGCAAA
TGCCGTGTATTGTCATGCAGATTCTACCATAAACATATAAAGGATTTAAA
GGGACACCTTGAGCGAGCTCATAATATGACGTTGGTATCTCATGCAAAAT
TACCTCCGTCACAGCTCAGTAGTGTCATACAGAAAAATAAGGGTAAATCG
TATATGAAAGGTAGGAAAATTGAACTATGTAGCCTAAGGGGTTGCATACA
CTATATGCAACCTCAAACGGATCTTACCCGACATTTAAAAATCTACCACG
CCGGTATGACGAAGAAGGAATATTATGCTAAAAGATGAGATCAGGAAAAT
ACAAGCTAGGCGGTCCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016703XLOC_016703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029301-exon-sc0000736-1575043694:32778..33456TCONS_00029301-exon-sc0000736-1575043694:32778..33456Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1575043694:32245..32555TCONS_00029301-exon-sc0000736-1575043694:32245..32555Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1575043694:31689..31777TCONS_00029301-exon-sc0000736-1575043694:31689..31777Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1575043694:31151..31288TCONS_00029301-exon-sc0000736-1575043694:31151..31288Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1575043694:30789..30899TCONS_00029301-exon-sc0000736-1575043694:30789..30899Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1510915933:32778..33456TCONS_00029301-exon-sc0000736-1510915933:32778..33456Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1510915933:32245..32555TCONS_00029301-exon-sc0000736-1510915933:32245..32555Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1510915933:31689..31777TCONS_00029301-exon-sc0000736-1510915933:31689..31777Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1510915933:31151..31288TCONS_00029301-exon-sc0000736-1510915933:31151..31288Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1510915933:30789..30899TCONS_00029301-exon-sc0000736-1510915933:30789..30899Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1491911889:32778..33456TCONS_00029301-exon-sc0000736-1491911889:32778..33456Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1491911889:32245..32555TCONS_00029301-exon-sc0000736-1491911889:32245..32555Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1491911889:31689..31777TCONS_00029301-exon-sc0000736-1491911889:31689..31777Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1491911889:31151..31288TCONS_00029301-exon-sc0000736-1491911889:31151..31288Clytia hemisphaericaexon
TCONS_00029301-exon-sc0000736-1491911889:30789..30899TCONS_00029301-exon-sc0000736-1491911889:30789..30899Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029301-proteinTCONS_00029301-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000736supercontigsc0000736:30789..33456 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0388584	0.534107	0.109073	0.0758627	8.46345	7.09505	8.8822	11.3106	4.8783	4.04558	3.68993	3.99077	2.07015	2.27213	1.69665	1.32022	1.90693	1.47099	0.28177	0.402996	1.25904	1.16806	0.652314	0.478251	1.02795	3.02616	1.13193	0.107137	0.257499	0.287662
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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