TCONS_00029155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029155
Unique NameTCONS_00029155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029155 ID=TCONS_00029155|Name=TCONS_00029155|organism=Clytia hemisphaerica|type=transcript|length=436bp
CTACAATATTAATCTTTACAATTCTTACAAAagaaacaagtaatacttta
atggacctacctatttataaaacgaataattagaatttaatggaagtaat
gtataatttcaaatttcgatttatatatctattggaacggagaaaTCAAT
TAACGTGCAATTGAAGTCGGAAACGTCAAGGAGTTTCGGCTAAAGTTGTC
CGCAGATCCATCTGTGGAGGTTTAAAATTTCagatcagaaaaaaatattg
acccgCTCCTGAATTTATGTTGGAAGAACTGTTCTTCTAGCATTTTCGGC
TATTTCCGGTAATTTTTGAACAGTTCCGTATCGAAAAATGGCTTTTACCA
TGGATTTGTACCCTTGTTTATtgtgaaaatcataaaaatacgTCTAAAAG
CTTTACCATTACTGTTTCTAAAATGCTGACCGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000726:15..450

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029155 ID=TCONS_00029155|Name=TCONS_00029155|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0000726:15..450 (Clytia hemisphaerica)
ATTTCGGTCAGCATTTTAGAAACAGTAATGGTAAAGCTTTTAGAcgtatt
tttatgattttcacaATAAACAAGGGTACAAATCCATGGTAAAAGCCATT
TTTCGATACGGAACTGTTCAAAAATTACCGGAAATAGCCGAAAATGCTAG
AAGAACAGTTCTTCCAACATAAATTCAGGAGcgggtcaatatttttttct
gatctGAAATTTTAAACCTCCACAGATGGATCTGCGGACAACTTTAGCCG
AAACTCCTTGACGTTTCCGACTTCAATTGCACGTTAATTGAtttctccgt
tccaatagatatataaatcgaaatttgaaattatacattacttccattaa
attctaattattcgttttataaataggtaggtccattaaagtattacttg
tttctTTTGTAAGAATTGTAAAGATTAATATTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016585XLOC_016585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029155-exon-sc0000726-1491911889:15..450TCONS_00029155-exon-sc0000726-1491911889:15..450Clytia hemisphaericaexon
TCONS_00029155-exon-sc0000726-1510915933:15..450TCONS_00029155-exon-sc0000726-1510915933:15..450Clytia hemisphaericaexon
TCONS_00029155-exon-sc0000726-1575043694:15..450TCONS_00029155-exon-sc0000726-1575043694:15..450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000726supercontigsc0000726:15..450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536516	0.740777	1.81763	1.18536	0.222807	1.05102	0.318264	1.46515	1.28327	1.21847	3.63148	1.48241	2.18515	3.65769	1.74421	1.95774	0.946438	1.05259	0	0.571788	1.88676	1.10551	2.7142	2.09203	0.262137	1.34034	1.96567	2.12017	2.15019	2.15135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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