|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029147 ID=TCONS_00029147|Name=TCONS_00029147|organism=Clytia hemisphaerica|type=transcript|length=2841bp
agctaatattaaaatcaaaaacagAATCGGATCTGCATTTTCCAAAACGT
GTTGAAACAATATGTCAAAAATGTGTTTGCTGTGTCATGAATCGAAATGG
AAAATCAAATGATTGTTACAGGAAGAAAAATTCCACGAAAGTTCGTCATT
TCAATGGATCAATCGCAACATATGATACCATCTTACTTGGATTTCAATAA
CAATAATGGCGCCGCTGCAACCAATCACCAACCATCAGTTGCAAGTTTTA
CTCCGGAGCAAGTGGCATGTGTTTGTGAAGTTCTTGAACAAAGTGGAAAT
TTCGATCGCTTGGCCCGTTTTCTTTGGTCACTACCAACCTATGATGATAT
TTATGCAAATGAAGCCGTTCTGGTTGCAAAAAGCGTGGTCGCATATCACC
AAGAAAACTTACAAGAATTATATCATATTATAGAGAATAACACATTTTCA
CCCATCTATCATCCTAAACTACAAATGTTATGGTTGAAAGCTCATTACAC
GGAAGCCGAGAAAATTCGGGGACGTCCACTCGGTGCTGTTGGGAAATACC
GCGTCCGTCGTAAATATCCGTTACCGCGTACCATTTGGGACGGTGAAGAA
ACGTCATACTGCTTCAAGGAGAAATCAAGAGTCGTCTTACGTGATTGGTA
TGCCCGTAATCCGTATCCGTCTCCACGTGAAAAGAAAGAGCTTTCAGAAG
GAACTGGTCTATCAACAACGCAAGTCTCAAATTGGTTTAAAAACCGTCGA
CAACGAGACCGCGCGGCCGAAGTAAAAGAACGCGAGGACGAACatgagaa
aaaatattatcgTGAGACATGGGAGAAACAGCAAACTGAGTTAGTACACC
GTAGCGCTTTACTGAAACCATCTAGTAATAACTTTTCAAGTGAACACATT
GCTGCTACTATTTTATCACAAAGTTTAGGAGCAAACAACCAACACCAACC
GGCATTTAACGTACCGCTGATCAATTCATCAGTAATCCGAACCAAAGATG
AAAACATTCCTGACGGCTATGGTAAAAAACAACCTTCAGATTTCGATGTT
TTGTCGAACATGTGATGAGTGTTTATGTTACCGTCTACAAAAactcttcg
tcggtaaaaagAGATTATTGGTAAGTGACAAATCATTCACCTCACCAAAA
CCGGGAttttttcattccgtttctttGTGAgctccactttgacgattttt
gaaaaatagaagcctttcaagtgtctTGAcgtaaattcgatttttttcgc
tactgcaggagcttcgaaagttaaaagtgaagtaaaaaaatcgaatgttt
ggagtccgaaaacctgggctccaaacattcgaaaaactTGCAAAGTGGTA
TGGACGTAAATTACGTTGAAAAAGCTGGTATAGGCTACGAATTTTTTTGT
CGacgaatattttttttgctaagtAGATTTCCCCCGACAAATTTTCTACC
GTTAAAGTTAAATGTAATGTAATTCTCGGATCTTGACCCACAAATCCTCA
CAGAATAGCATATATTGGACAAAACTACTTTAAAGCGTCAATTTGCAATA
ACCTGCTTGCCTTTACGTTGTAAACATCTTCATGTTTGATAGCATACgtc
acccctgtgtcacagacccgctggaacACCAGCCccgctggaaaatttgg
caaaaatttcgtccccagtgAGAAAATACTCTGAAATTTCAGCACCGCTG
Gtaatttgactttgatttcatctccattcgagattcaatgtttaaaaatt
gcactccaaagcCATCCCAACTGGATtctttaaccttggaacaataaaat
tcttatcccaattgagatttcaataggaatttttatccccactgaggaaa
aagttccaccggggctgtgagacaggggtgtcatacGGAATGTCATTGAT
GAACTATGATGGATATTGTACCGTTAAATATAAAAGCTCGCTTAGCAATC
AAATGCGTCAAAATGGTAATAATTCAGATAGTGCTCAGGTAAAGTCACTT
GGAAAAAATACCAAACTGGTGCTCATCTGCGAATAAATTTTGGCAGAGTC
TTTTCTTACCGACCAGCATGGTTCGTCTATCGAATGTTGAGCTTTTGGAT
TGTTAAGGGTACTTACAATGTGAAATGATTTCGATTCTGagagaaaacat
ttttgttaaaaccgcgaaaaacttCTTGGTAATTGGGaattttatacatt
tttgatCGTTTTGATGTGAAAGCTTTGGATCAACaatgacatttgttttg
atatgtgatttgtttgtaaatatgaaaaaaagataaactttaACAAACaa
cattttatatatttttgatacttgagaatttgttattttttagatttctt
aAGTGAAAAAGTTGATTTGTGAACTAGAAAAACCAGATGGTGATTCATCT
AGAGTGTCTCAAAAGACGAAGTTTGGACccgggggcactcgattcaaaaa
tgaccatgagtgcggcccaaaattaggcctttgaaatcggacccttacag
tgcacttctTTGAAGatctttgaccatttttaggcaaaatatggtcagat
tttcaaaactttacactcttagagtgcaatttttctcatctttgctcatg
TCGATCCTAAGAGTGGACTTTACGAAGCTTGGAAAAGGGACGCTTCAGGA
CCGCACATACGGTaagtcgtttaccttgagtgccccttCTCCCGGGAGTT
TATATGTGATTTGTTTGTAAATATGAAAAGAAGATAAACTTTAACAAACa
acattttatatatttttggtcGATCTTTTTTAATCCACCCTAAAGACTAA
AAATTACTTAAAATCGACCTCtcaaataagtttctttttaa Run BLAST on NCBI protein sequence of TCONS_00029147-protein >TCONS_00029147-protein ID=TCONS_00029147-protein|Name=TCONS_00029147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MENQMIVTGRKIPRKFVISMDQSQHMIPSYLDFNNNNGAAATNHQPSVAS
FTPEQVACVCEVLEQSGNFDRLARFLWSLPTYDDIYANEAVLVAKSVVAY
HQENLQELYHIIENNTFSPIYHPKLQMLWLKAHYTEAEKIRGRPLGAVGK
YRVRRKYPLPRTIWDGEETSYCFKEKSRVVLRDWYARNPYPSPREKKELS
EGTGLSTTQVSNWFKNRRQRDRAAEVKEREDEHEKKYYRETWEKQQTELV
HRSALLKPSSNNFSSEHIAATILSQSLGANNQHQPAFNVPLINSSVIRTK
DENIPDGYGKKQPSDFDVLSNM Run BLAST on NCBI transcript from alignment at sc0000726:96247..101878- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029147 ID=TCONS_00029147|Name=TCONS_00029147|organism=Clytia hemisphaerica|type=transcript|length=5632bp|location=Sequence derived from alignment at sc0000726:96247..101878- (Clytia hemisphaerica)
AGCTAATATTAAAATCAAAAACAGAATCGGATCTGCATTTTCCAAAACGT
GTTGAAACAATATGTCAAAAATGTGTTTGCTGTGTCATGAATCGAAATGG
AAAATCAAATGATTGTTACAGGAAGAAAAATTCCACGAAAGTTCGTCATT
TCAGTAAGTCAGTCATTACCTTTCGTTTGGCTTTGTATTGGTTTTATGAT
AAAATATTCCTTTTTACTTGGACTTGTTTTCAATAAATCTCGTACTTTTT
TCATTTTAATGTTCATTTACAACGTGCCATTCACAATTTCTATCTGTTCC
TTGTTGGAAAGGTAATCGCTAATAGAGAGCAGAACATTATAAACTAAACC
CGTGAATTTGTGCGAGCCATCTCAAACAGCGCTCTTGTGGTGTTTTAGCC
TTTAATTCTCATAATTTAATAAGGTTTTATAGAAAAAATGTTGACTTGCA
ATAACATTATAAAATCATACTGAAAGTGGTGTTGATAAAATTATAGTCTT
TATTTTTTACAAACATATATTTATGATTTGATTTAATTCACTACAGCAGA
TTTAAAAACTGTAAAAATTTCAGTGACATTTCTTTTTTGAAATTATCTTT
TGGATTGTTAGTTGTTGAGGTGAGAATTTCAACTTAAATTGTCAGACAAA
AAAATGTGCTCATATCTGTTGTTATGGGTGAATATTTAGACATTTCCTTC
ATTTTTAACACCCCCTTCTCACAGACCCACCGAGACCCCTCCCACTGGAG
ATATTGGTGAAAATATCGTCCTCAGTGACAAATTATACTTTATTTTTTGT
ACCCACTGAAAAAAATCAGATAAGCAAATCCTCACTGCAAAATATTGCAC
TATTTTTTGCATCCCACTGCATTTTTTAGCTCGAAAACGATGGAATTCAT
ATCCCTATATCCATAAAAAACATGGAAATATCAATCCCGATCGAGTTTTG
GTCCGTGATTTTTACCCTCCACTAACTGAAAGAAATCATACCGGATCTGT
GAGAAGGGGGTGCTTTCTATCAAGGAAAATATTTGGGTCCTATGNCACTA
ACTGAAAGAAATCATACTGGATCTGTGAGAAGGGGGTGCTTTCTATCAAG
GAAAATATTTGGGTCCTATGATCATTGTTAGTGTTTGGGATTAGAATATG
ACAAAAGTTGTCCGCCTGTCTACCTGTCTACATTTTGCTTGTCTAGAACA
CGTAGGGCTATTCTTGTAGATTTTTATAAATGGTCAGAATCTGCTTAAAT
TTTATAGATGCATCTGTTCTTTGGATAAATAATTAAGATATGAAGTATGC
TGTACTCAGAAATATTTTGAAAAAGATTTGAGGATTTTCCCATAATACTA
CCCAGCAACATTTCATCAGGCATCTGAACTATCAAGTATATATTGTGTAC
AGGGAACTGATTTTAGATACAATCTAGTGGGAAGTCAATACTAATGCTAT
TGATATTACTTTACTTGTCATATGAAACTTCTATATCTACGTCTTGTATA
ACTGTTTCTAAATTTGAACAAAATTTGAACAAAAAAAGTTTTGTAAAGTT
TGATGACATCCAGAAATGAATAAAACTGACAGACATTGAATTTATTTTTG
ATTAAATGTCGTAAGATATTATGATTTTCCAAAATGAAAATGTTAGCATG
TTCTAGCAAGCCTAAACTTAAATGAAAGTTAATCTTCAAACTAAGATGTT
TTTAATTCGATTGTGATTTGAAATTGGGTAAATTCATCGCATTTTTCGCA
AAAACAAGCTTCCTAGAAAAGATTTAACAATTTTTCACATAAAAATTTCT
TAAATCGTGGTTGCATCTAAATTGGTACGTAGAATAGAAATATTTTAGGC
AGGGTATAATTTTCAAACGCGAAAAGATGGCTATAAGAATTATGATTTAA
ATTCTCTAGAGAACAGTACCCTCCGAGAATGAAGTAATCATATCAATTCA
GGGTGTCCGGAAAAGAGTATCGAGTCAAAACTTAACAAACGTTTTTATCT
GTATTCACAAAATTATATTTTGAGTTAAATAAAAGTCAAAGTTAAATGAA
AAAAGAAAATAAAAGTAAATAAAAAAAATAAAATTAAAGTTAGATTAAAG
GCTGACATTCCCCTAAATAGTTGACCAGAAATCCCAAACAGCAAACTTAA
GCTATTATGTGCCTCATCGGTCATCGGACAAAGAAATGCACAAAATTAAA
TCAAAGGGGCCTCGAAAGCGTGACAAATTGAAGTAGTAAAAATAAAAAAA
GGGAAAATTTACAGTCTCTTGTTATCATTTATTCAACGAAACTTTAAGGG
GTCAACGTTCTCTTATAAAACTTTACCTATCAAATTCTCAATTTTCACAT
CAAAATAGGCGCCCGAAAAAAAAGATTTTTTAGTACTATTGTGTGACTAT
CATACTGTAAACTTAACCCTAGTTGACCTTTACAAAACAAAAAAAAATTG
TTCAAACTTTGAGAAGTTCCATGACTGAGGTTGTCACACCTCATAAACAA
GTGAAGTGCTATGTAAGATGAAATATACAGTATGTTTTTATAAGAACATT
TTAAAAGTCTCTTCATTTGAATCTTGCTACTTTCTATGAACACTTTGAGA
ATGTCTTATTCTTAGATATTCTTAGTTCATGGGCTACCATGCCTCTGCAT
TTTGTAGAAGCTTAAGATTCTATATTGTTCTTATTATGATGTTTTTAAAT
TCCATTGTTCTTATAAAAACTTGCGTTGTACACAATACGTTTTGTAATGA
CAATTCTTTTTGTTTTCGTCACATTTTTGATCAAAAAAACAATTTTTGAC
AACAAATTTTTGTATATATTTCTTTTTGACAAGGGATAAGAGATAAGATT
TCTTAAATTTCATTTCAGATTTAATGACAGTGCTGTACGCCTGGGGTGTA
GATTCCAGTTAAAAAAAAATACTGTTTTTGTTTCTTTATTAAAGATGGAT
CAATCGCAACATATGATACCATCTTACTTGGATTTCAATAACAATAATGG
CGCCGCTGCAACCAATCACCAACCATCAGTTGCAAGTTTTACTCCGGAGC
AAGTGGCATGTGTTTGTGAAGTTCTTGAACAAAGTGGAAATTTCGATCGC
TTGGCCCGTTTTCTTTGGTCACTACCAACCTATGATGATATTTATGCAAA
TGAAGCCGTTCTGGTTGCAAAAAGCGTGGTCGCATATCACCAAGAAAACT
TACAAGAATTATATCATATTATAGAGAATAACACATTTTCACCCATCTAT
CATCCTAAACTACAAATGTTATGGTTGAAAGCTCATTACACGGAAGCCGA
GAAAATTCGGGGACGTCCACTCGGTGCTGTTGGGAAATACCGCGTCCGTC
GTAAATATCCGTTACCGCGTACCATTTGGGACGGTGAAGAAACGTCATAC
TGCTTCAAGGAGAAATCAAGAGTCGTCTTACGTGATTGGTATGCCCGTAA
TCCGTATCCGTCTCCACGTGAAAAGAAAGAGCTTTCAGAAGGAACTGGTC
TATCAACAACGCAAGTCTCAAATTGGTTTAAAAACCGTCGACAACGAGAC
CGCGCGGCCGAAGTAAAAGAACGCGAGGACGAACATGAGAAAAAATATTA
TCGTGAGACATGGGAGAAACAGCAAACTGAGTTAGTACACCGTAGCGCTT
TACTGAAACCATCTAGTAATAACTTTTCAAGTGAACACATTGCTGCTACT
ATTTTATCACAAAGTTTAGGAGCAAACAACCAACACCAACCGGCATTTAA
CGTACCGCTGATCAATTCATCAGTAATCCGAACCAAAGATGAAAACATTC
CTGACGGCTATGGTAAAAAACAACCTTCAGATTTCGATGTTTTGTCGAAC
ATGTGATGAGTGTTTATGTTACCGTCTACAAAAACTCTTCGTCGGTAAAA
AGAGATTATTGGTAAGTGACAAATCATTCACCTCACCAAAACCGGGATTT
TTTCATTCCGTTTCTTTGTGAGCTCCACTTTGACGATTTTTGAAAAATAG
AAGCCTTTCAAGTGTCTTGACGTAAATTCGATTTTTTTCGCTACTGCAGG
AGCTTCGAAAGTTAAAAGTGAAGTAAAAAAATCGAATGTTTGGAGTCCGA
AAACCTGGGCTCCAAACATTCGAAAAACTTGCAAAGTGGTATGGACGTAA
ATTACGTTGAAAAAGCTGGTATAGGCTACGAATTTTTTTGTCGACGAATA
TTTTTTTTGCTAAGTAGATTTCCCCCGACAAATTTTCTACCGTTAAAGTT
AAATGTAATGTAATTCTCGGATCTTGACCCACAAATCCTCACAGAATAGC
ATATATTGGACAAAACTACTTTAAAGCGTCAATTTGCAATAACCTGCTTG
CCTTTACGTTGTAAACATCTTCATGTTTGATAGCATACGTCACCCCTGTG
TCACAGACCCGCTGGAACACCAGCCCCGCTGGAAAATTTGGCAAAAATTT
CGTCCCCAGTGAGAAAATACTCTGAAATTTCAGCACCGCTGGTAATTTGA
CTTTGATTTCATCTCCATTCGAGATTCAATGTTTAAAAATTGCACTCCAA
AGCCATCCCAACTGGATTCTTTAACCTTGGAACAATAAAATTCTTATCCC
AATTGAGATTTCAATAGGAATTTTTATCCCCACTGAGGAAAAAGTTCCAC
CGGGGCTGTGAGACAGGGGTGTCATACGGAATGTCATTGATGAACTATGA
TGGATATTGTACCGTTAAATATAAAAGCTCGCTTAGCAATCAAATGCGTC
AAAATGGTAATAATTCAGATAGTGCTCAGGTAAAGTCACTTGGAAAAAAT
ACCAAACTGGTGCTCATCTGCGAATAAATTTTGGCAGAGTCTTTTCTTAC
CGACCAGCATGGTTCGTCTATCGAATGTTGAGCTTTTGGATTGTTAAGGG
TACTTACAATGTGAAATGATTTCGATTCTGAGAGAAAACATTTTTGTTAA
AACCGCGAAAAACTTCTTGGTAATTGGGAATTTTATACATTTTTGATCGT
TTTGATGTGAAAGCTTTGGATCAACAATGACATTTGTTTTGATATGTGAT
TTGTTTGTAAATATGAAAAAAAGATAAACTTTAACAAACAACATTTTATA
TATTTTTGATACTTGAGAATTTGTTATTTTTTAGATTTCTTAAGTGAAAA
AGTTGATTTGTGAACTAGAAAAACCAGATGGTGATTCATCTAGAGTGTCT
CAAAAGACGAAGTTTGGACCCGGGGGCACTCGATTCAAAAATGACCATGA
GTGCGGCCCAAAATTAGGCCTTTGAAATCGGACCCTTACAGTGCACTTCT
TTGAAGATCTTTGACCATTTTTAGGCAAAATATGGTCAGATTTTCAAAAC
TTTACACTCTTAGAGTGCAATTTTTCTCATCTTTGCTCATGTCGATCCTA
AGAGTGGACTTTACGAAGCTTGGAAAAGGGACGCTTCAGGACCGCACATA
CGGTAAGTCGTTTACCTTGAGTGCCCCTTCTCCCGGGAGTTTATATGTGA
TTTGTTTGTAAATATGAAAAGAAGATAAACTTTAACAAACAACATTTTAT
ATATTTTTGGTCGATCTTTTTTAATCCACCCTAAAGACTAAAAATTACTT
AAAATCGACCTCTCAAATAAGTTTCTTTTTAA Coding sequence (CDS) from alignment at sc0000726:96247..101878- >TCONS_00029147 ID=TCONS_00029147|Name=TCONS_00029147|organism=Clytia hemisphaerica|type=CDS|length=1938bp|location=Sequence derived from alignment at sc0000726:96247..101878- (Clytia hemisphaerica)
ATGGATCAATCGCAACATATGATACCATCTTACTTGGATTTCAATAACAA
TAATGGCGCCGCTGCAACCAATCACCAACCATCAGTTGCAAGTTTTACTC
CGGAGCAAGTGGCATGTGTTTGTGAAGTTCTTGAACAAAGTGGAAATTTC
GATCGCTTGGCCCGTTTTCTTTGGTCACTACCAACCTATGATGATATTTA
TGCAAATGAAGCCGTTCTGGTTGCAAAAAGCGTGGTCGCATATCACCAAG
AAAACTTACAAGAATTATATCATATTATAGAGAATAACACATTTTCACCC
ATCTATCATCCTAAACTACAAATGTTATGGTTGAAAGCTCATTACACGGA
AGCCGAGAAAATTCGGGGACGTCCACTCGGTGCTGTTGGGAAATACCGCG
TCCGTCGTAAATATCCGTTACCGCGTACCATTTGGGACGGTGAAGAAACG
TCATACTGCTTCAAGGAGAAATCAAGAGTCGTCTTACGTGATTGGTATGC
CCGTAATCCGTATCCGTCTCCACGTGAAAAGAAAGAGCTTTCAGAAGGAA
CTGGTCTATCAACAACGCAAGTCTCAAATTGGTTTAAAAACCGTCGACAA
CGAGACCGCGCGGCCGAAGTAAAAGAACGCGAGGACGAACATGAGAAAAA
ATATTATCGTGAGACATGGGAGAAACAGCAAACTGAGTTAGTACACCGTA
GCGCTTTACTGAAACCATCTAGTAATAACTTTTCAAGTGAACACATTGCT
GCTACTATTTTATCACAAAGTTTAGGAGCAAACAACCAACACCAACCGGC
ATTTAACGTACCGCTGATCAATTCATCAGTAATCCGAACCAAAGATGAAA
ACATTCCTGACGGCTATGGTAAAAAACAACCTTCAGATTTCGATGTTTTG
TCGAACATGTGAATGGAAAATCAAATGATTGTTACAGGAAGAAAAATTCC
ACGAAAGTTCGTCATTTCAATGGATCAATCGCAACATATGATACCATCTT
ACTTGGATTTCAATAACAATAATGGCGCCGCTGCAACCAATCACCAACCA
TCAGTTGCAAGTTTTACTCCGGAGCAAGTGGCATGTGTTTGTGAAGTTCT
TGAACAAAGTGGAAATTTCGATCGCTTGGCCCGTTTTCTTTGGTCACTAC
CAACCTATGATGATATTTATGCAAATGAAGCCGTTCTGGTTGCAAAAAGC
GTGGTCGCATATCACCAAGAAAACTTACAAGAATTATATCATATTATAGA
GAATAACACATTTTCACCCATCTATCATCCTAAACTACAAATGTTATGGT
TGAAAGCTCATTACACGGAAGCCGAGAAAATTCGGGGACGTCCACTCGGT
GCTGTTGGGAAATACCGCGTCCGTCGTAAATATCCGTTACCGCGTACCAT
TTGGGACGGTGAAGAAACGTCATACTGCTTCAAGGAGAAATCAAGAGTCG
TCTTACGTGATTGGTATGCCCGTAATCCGTATCCGTCTCCACGTGAAAAG
AAAGAGCTTTCAGAAGGAACTGGTCTATCAACAACGCAAGTCTCAAATTG
GTTTAAAAACCGTCGACAACGAGACCGCGCGGCCGAAGTAAAAGAACGCG
AGGACGAACATGAGAAAAAATATTATCGTGAGACATGGGAGAAACAGCAA
ACTGAGTTAGTACACCGTAGCGCTTTACTGAAACCATCTAGTAATAACTT
TTCAAGTGAACACATTGCTGCTACTATTTTATCACAAAGTTTAGGAGCAA
ACAACCAACACCAACCGGCATTTAACGTACCGCTGATCAATTCATCAGTA
ATCCGAACCAAAGATGAAAACATTCCTGACGGCTATGGTAAAAAACAACC
TTCAGATTTCGATGTTTTGTCGAACATGTGAATGGAAAATCAAATGATTG
TTACAGGAAGAAAAATTCCACGAAAGTTCGTCATTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029147-exon-sc0000726-1575043694:101726..101878 | TCONS_00029147-exon-sc0000726-1575043694:101726..101878 | Clytia hemisphaerica | exon |
| TCONS_00029147-exon-sc0000726-1575043694:96247..98934 | TCONS_00029147-exon-sc0000726-1575043694:96247..98934 | Clytia hemisphaerica | exon |
| TCONS_00029147-exon-sc0000726-1510915933:101726..101878 | TCONS_00029147-exon-sc0000726-1510915933:101726..101878 | Clytia hemisphaerica | exon |
| TCONS_00029147-exon-sc0000726-1510915933:96247..98934 | TCONS_00029147-exon-sc0000726-1510915933:96247..98934 | Clytia hemisphaerica | exon |
| TCONS_00029147-exon-sc0000726-1491911889:101726..101878 | TCONS_00029147-exon-sc0000726-1491911889:101726..101878 | Clytia hemisphaerica | exon |
| TCONS_00029147-exon-sc0000726-1491911889:96247..98934 | TCONS_00029147-exon-sc0000726-1491911889:96247..98934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:96247..101878 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00029147 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 1.446e-97 Identity = 141/182 (77.47%), Postives = 160/182 (87.91%), Query Frame = 1
Query: 244 SFTPEQVACVCEVLEQSGNFDRLARFLWSLPTYDDIYANEAVLVAKSVVAYHQENLQELYHIIENNTFSPIYHPKLQMLWLKAHYTEAEKIRGRPLGAVGKYRVRRKYPLPRTIWDGEETSYCFKEKSRVVLRDWYARNPYPSPREKKELSEGTGLSTTQVSNWFKNRRQRDRAAEVKERED 789
FT EQVACVCEVL+Q GN +RL RFLWSLP D ++ NE+VL AK+VVA+H+ N +ELY I+E++ FSP HPKLQ LWLKAHY EAEK+RGRPLGAVGKYRVRRK+PLPRTIWDGEETSYCFKEKSR VLR+WYA NPYPSPREK+EL+E TGL+TTQVSNWFKNRRQRDRAAE KERE+
Sbjct: 8 GFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
The following BLAST results are available for this feature:
|
