TCONS_00029147-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00029147-protein
Unique NameTCONS_00029147-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00029147-protein ID=TCONS_00029147-protein|Name=TCONS_00029147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MENQMIVTGRKIPRKFVISMDQSQHMIPSYLDFNNNNGAAATNHQPSVAS
FTPEQVACVCEVLEQSGNFDRLARFLWSLPTYDDIYANEAVLVAKSVVAY
HQENLQELYHIIENNTFSPIYHPKLQMLWLKAHYTEAEKIRGRPLGAVGK
YRVRRKYPLPRTIWDGEETSYCFKEKSRVVLRDWYARNPYPSPREKKELS
EGTGLSTTQVSNWFKNRRQRDRAAEVKEREDEHEKKYYRETWEKQQTELV
HRSALLKPSSNNFSSEHIAATILSQSLGANNQHQPAFNVPLINSSVIRTK
DENIPDGYGKKQPSDFDVLSNM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016580XLOC_016580Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00029147TCONS_00029147Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR031701SIX1_SD
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 216..236
NoneNo IPR availableGENE3D1.10.10.60coord: 171..237
e-value: 7.8E-18
score: 63.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..322
NoneNo IPR availableCDDcd00086homeodomaincoord: 171..222
e-value: 3.50427E-14
score: 64.9572
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 167..228
e-value: 3.2E-15
score: 66.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 173..222
e-value: 4.3E-13
score: 48.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 164..224
score: 14.609
IPR031701Homeobox protein SIX1, N-terminal SD domainPFAMPF16878SIX1_SDcoord: 51..161
e-value: 1.2E-45
score: 154.4
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 199..222
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 164..230

Blast
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BLAST of TCONS_00029147-protein vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.379e-106
Identity = 141/182 (77.47%), Postives = 160/182 (87.91%), Query Frame = 0 
Query:   50 SFTPEQVACVCEVLEQSGNFDRLARFLWSLPTYDDIYANEAVLVAKSVVAYHQENLQELYHIIENNTFSPIYHPKLQMLWLKAHYTEAEKIRGRPLGAVGKYRVRRKYPLPRTIWDGEETSYCFKEKSRVVLRDWYARNPYPSPREKKELSEGTGLSTTQVSNWFKNRRQRDRAAEVKERED 231
             FT EQVACVCEVL+Q GN +RL RFLWSLP  D ++ NE+VL AK+VVA+H+ N +ELY I+E++ FSP  HPKLQ LWLKAHY EAEK+RGRPLGAVGKYRVRRK+PLPRTIWDGEETSYCFKEKSR VLR+WYA NPYPSPREK+EL+E TGL+TTQVSNWFKNRRQRDRAAE KERE+
Sbjct:    8 GFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
The following BLAST results are available for this feature:
BLAST of TCONS_00029147-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX12.379e-10677.47Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1... [more]
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