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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029145 ID=TCONS_00029145|Name=TCONS_00029145|organism=Clytia hemisphaerica|type=transcript|length=2711bp
ctttTGGATTGTTAGTTGTTGAGATGGATCAATCGCAACATATGATACCA
TCTTACTTGGATTTCAATAACAATAATGGCGCCGCTGCAACCAATCACCA
ACCATCAGTTGCAAGTTTTACTCCGGAGCAAGTGGCATGTGTTTGTGAAG
TTCTTGAACAAAGTGGAAATTTCGATCGCTTGGCCCGTTTTCTTTGGTCA
CTACCAACCTATGATGATATTTATGCAAATGAAGCCGTTCTGGTTGCAAA
AAGCGTGGTCGCATATCACCAAGAAAACTTACAAGAATTATATCATATTA
TAGAGAATAACACATTTTCACCCATCTATCATCCTAAACTACAAATGTTA
TGGTTGAAAGCTCATTACACGGAAGCCGAGAAAATTCGGGGACGTCCACT
CGGTGCTGTTGGGAAATACCGCGTCCGTCGTAAATATCCGTTACCGCGTA
CCATTTGGGACGGTGAAGAAACGTCATACTGCTTCAAGGAGAAATCAAGA
GTCGTCTTACGTGATTGGTATGCCCGTAATCCGTATCCGTCTCCACGTGA
AAAGAAAGAGCTTTCAGAAGGAACTGGTCTATCAACAACGCAAGTCTCAA
ATTGGTTTAAAAACCGTCGACAACGAGACCGCGCGGCCGAAGTAAAAGAA
CGCGAGGACGAACatgagaaaaaatattatcgTGAGACATGGGAGAAACA
GCAAACTGAGTTAGTACACCGTAGCGCTTTACTGAAACCATCTAGTAATA
ACTTTTCAAGTGAACACATTGCTGCTACTATTTTATCACAAAGTTTAGGA
GCAAACAACCAACACCAACCGGCATTTAACGTACCGCTGATCAATTCATC
AGTAATCCGAACCAAAGATGAAAACATTCCTGACGGCTATGGTAAAAAAC
AACCTTCAGATTTCGATGTTTTGTCGAACATGTGATGAGTGTTTATGTTA
CCGTCTACAAAAactcttcgtcggtaaaaagAGATTATTGGTAAGTGACA
AATCATTCACCTCACCAAAACCGGGAttttttcattccgtttctttGTGA
gctccactttgacgatttttgaaaaatagaagcctttcaagtgtctTGAc
gtaaattcgatttttttcgctactgcaggagcttcgaaagttaaaagtga
agtaaaaaaatcgaatgtttggagtccgaaaacctgggctccaaacattc
gaaaaactTGCAAAGTGGTATGGACGTAAATTACGTTGAAAAAGCTGGTA
TAGGCTACGAATTTTTTTGTCGacgaatattttttttgctaagtAGATTT
CCCCCGACAAATTTTCTACCGTTAAAGTTAAATGTAATGTAATTCTCGGA
TCTTGACCCACAAATCCTCACAGAATAGCATATATTGGACAAAACTACTT
TAAAGCGTCAATTTGCAATAACCTGCTTGCCTTTACGTTGTAAACATCTT
CATGTTTGATAGCATACgtcacccctgtgtcacagacccgctggaacACC
AGCCccgctggaaaatttggcaaaaatttcgtccccagtgAGAAAATACT
CTGAAATTTCAGCACCGCTGGtaatttgactttgatttcatctccattcg
agattcaatgtttaaaaattgcactccaaagcCATCCCAACTGGATtctt
taaccttggaacaataaaattcttatcccaattgagatttcaataggaat
ttttatccccactgaggaaaaagttccaccggggctgtgagacaggggtg
tcatacGGAATGTCATTGATGAACTATGATGGATATTGTACCGTTAAATA
TAAAAGCTCGCTTAGCAATCAAATGCGTCAAAATGGTAATAATTCAGATA
GTGCTCAGGTAAAGTCACTTGGAAAAAATACCAAACTGGTGCTCATCTGC
GAATAAATTTTGGCAGAGTCTTTTCTTACCGACCAGCATGGTTCGTCTAT
CGAATGTTGAGCTTTTGGATTGTTAAGGGTACTTACAATGTGAAATGATT
TCGATTCTGagagaaaacatttttgttaaaaccgcgaaaaacttCTTGGT
AATTGGGaattttatacatttttgatCGTTTTGATGTGAAAGCTTTGGAT
CAACaatgacatttgttttgatatgtgatttgtttgtaaatatgaaaaaa
agataaactttaACAAACaacattttatatatttttgatacttgagaatt
tgttattttttagatttcttaAGTGAAAAAGTTGATTTGTGAACTAGAAA
AACCAGATGGTGATTCATCTAGAGTGTCTCAAAAGACGAAGTTTGGACcc
gggggcactcgattcaaaaatgaccatgagtgcggcccaaaattaggcct
ttgaaatcggacccttacagtgcacttctTTGAAGatctttgaccatttt
taggcaaaatatggtcagattttcaaaactttacactcttagagtgcaat
ttttctcatctttgctcatgTCGATCCTAAGAGTGGACTTTACGAAGCTT
GGAAAAGGGACGCTTCAGGACCGCACATACGGTaagtcgtttaccttgag
tgccccttCTCCCGGGAGTTTATATGTGATTTGTTTGTAAATATGAAAAG
AAGATAAACTTTAACAAACaacattttatatatttttggtcGATCTTTTT
TAATCCACCCTAAAGACTAAAAATTACTTAAAATCGACCTCtcaaataag
tttctttttaa Run BLAST on NCBI transcript from alignment at sc0000726:96247..101282- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029145 ID=TCONS_00029145|Name=TCONS_00029145|organism=Clytia hemisphaerica|type=transcript|length=5036bp|location=Sequence derived from alignment at sc0000726:96247..101282- (Clytia hemisphaerica)
CTTTTGGATTGTTAGTTGTTGAGGTGAGAATTTCAACTTAAATTGTCAGA
CAAAAAAATGTGCTCATATCTGTTGTTATGGGTGAATATTTAGACATTTC
CTTCATTTTTAACACCCCCTTCTCACAGACCCACCGAGACCCCTCCCACT
GGAGATATTGGTGAAAATATCGTCCTCAGTGACAAATTATACTTTATTTT
TTGTACCCACTGAAAAAAATCAGATAAGCAAATCCTCACTGCAAAATATT
GCACTATTTTTTGCATCCCACTGCATTTTTTAGCTCGAAAACGATGGAAT
TCATATCCCTATATCCATAAAAAACATGGAAATATCAATCCCGATCGAGT
TTTGGTCCGTGATTTTTACCCTCCACTAACTGAAAGAAATCATACCGGAT
CTGTGAGAAGGGGGTGCTTTCTATCAAGGAAAATATTTGGGTCCTATGNC
ACTAACTGAAAGAAATCATACTGGATCTGTGAGAAGGGGGTGCTTTCTAT
CAAGGAAAATATTTGGGTCCTATGATCATTGTTAGTGTTTGGGATTAGAA
TATGACAAAAGTTGTCCGCCTGTCTACCTGTCTACATTTTGCTTGTCTAG
AACACGTAGGGCTATTCTTGTAGATTTTTATAAATGGTCAGAATCTGCTT
AAATTTTATAGATGCATCTGTTCTTTGGATAAATAATTAAGATATGAAGT
ATGCTGTACTCAGAAATATTTTGAAAAAGATTTGAGGATTTTCCCATAAT
ACTACCCAGCAACATTTCATCAGGCATCTGAACTATCAAGTATATATTGT
GTACAGGGAACTGATTTTAGATACAATCTAGTGGGAAGTCAATACTAATG
CTATTGATATTACTTTACTTGTCATATGAAACTTCTATATCTACGTCTTG
TATAACTGTTTCTAAATTTGAACAAAATTTGAACAAAAAAAGTTTTGTAA
AGTTTGATGACATCCAGAAATGAATAAAACTGACAGACATTGAATTTATT
TTTGATTAAATGTCGTAAGATATTATGATTTTCCAAAATGAAAATGTTAG
CATGTTCTAGCAAGCCTAAACTTAAATGAAAGTTAATCTTCAAACTAAGA
TGTTTTTAATTCGATTGTGATTTGAAATTGGGTAAATTCATCGCATTTTT
CGCAAAAACAAGCTTCCTAGAAAAGATTTAACAATTTTTCACATAAAAAT
TTCTTAAATCGTGGTTGCATCTAAATTGGTACGTAGAATAGAAATATTTT
AGGCAGGGTATAATTTTCAAACGCGAAAAGATGGCTATAAGAATTATGAT
TTAAATTCTCTAGAGAACAGTACCCTCCGAGAATGAAGTAATCATATCAA
TTCAGGGTGTCCGGAAAAGAGTATCGAGTCAAAACTTAACAAACGTTTTT
ATCTGTATTCACAAAATTATATTTTGAGTTAAATAAAAGTCAAAGTTAAA
TGAAAAAAGAAAATAAAAGTAAATAAAAAAAATAAAATTAAAGTTAGATT
AAAGGCTGACATTCCCCTAAATAGTTGACCAGAAATCCCAAACAGCAAAC
TTAAGCTATTATGTGCCTCATCGGTCATCGGACAAAGAAATGCACAAAAT
TAAATCAAAGGGGCCTCGAAAGCGTGACAAATTGAAGTAGTAAAAATAAA
AAAAGGGAAAATTTACAGTCTCTTGTTATCATTTATTCAACGAAACTTTA
AGGGGTCAACGTTCTCTTATAAAACTTTACCTATCAAATTCTCAATTTTC
ACATCAAAATAGGCGCCCGAAAAAAAAGATTTTTTAGTACTATTGTGTGA
CTATCATACTGTAAACTTAACCCTAGTTGACCTTTACAAAACAAAAAAAA
ATTGTTCAAACTTTGAGAAGTTCCATGACTGAGGTTGTCACACCTCATAA
ACAAGTGAAGTGCTATGTAAGATGAAATATACAGTATGTTTTTATAAGAA
CATTTTAAAAGTCTCTTCATTTGAATCTTGCTACTTTCTATGAACACTTT
GAGAATGTCTTATTCTTAGATATTCTTAGTTCATGGGCTACCATGCCTCT
GCATTTTGTAGAAGCTTAAGATTCTATATTGTTCTTATTATGATGTTTTT
AAATTCCATTGTTCTTATAAAAACTTGCGTTGTACACAATACGTTTTGTA
ATGACAATTCTTTTTGTTTTCGTCACATTTTTGATCAAAAAAACAATTTT
TGACAACAAATTTTTGTATATATTTCTTTTTGACAAGGGATAAGAGATAA
GATTTCTTAAATTTCATTTCAGATTTAATGACAGTGCTGTACGCCTGGGG
TGTAGATTCCAGTTAAAAAAAAATACTGTTTTTGTTTCTTTATTAAAGAT
GGATCAATCGCAACATATGATACCATCTTACTTGGATTTCAATAACAATA
ATGGCGCCGCTGCAACCAATCACCAACCATCAGTTGCAAGTTTTACTCCG
GAGCAAGTGGCATGTGTTTGTGAAGTTCTTGAACAAAGTGGAAATTTCGA
TCGCTTGGCCCGTTTTCTTTGGTCACTACCAACCTATGATGATATTTATG
CAAATGAAGCCGTTCTGGTTGCAAAAAGCGTGGTCGCATATCACCAAGAA
AACTTACAAGAATTATATCATATTATAGAGAATAACACATTTTCACCCAT
CTATCATCCTAAACTACAAATGTTATGGTTGAAAGCTCATTACACGGAAG
CCGAGAAAATTCGGGGACGTCCACTCGGTGCTGTTGGGAAATACCGCGTC
CGTCGTAAATATCCGTTACCGCGTACCATTTGGGACGGTGAAGAAACGTC
ATACTGCTTCAAGGAGAAATCAAGAGTCGTCTTACGTGATTGGTATGCCC
GTAATCCGTATCCGTCTCCACGTGAAAAGAAAGAGCTTTCAGAAGGAACT
GGTCTATCAACAACGCAAGTCTCAAATTGGTTTAAAAACCGTCGACAACG
AGACCGCGCGGCCGAAGTAAAAGAACGCGAGGACGAACATGAGAAAAAAT
ATTATCGTGAGACATGGGAGAAACAGCAAACTGAGTTAGTACACCGTAGC
GCTTTACTGAAACCATCTAGTAATAACTTTTCAAGTGAACACATTGCTGC
TACTATTTTATCACAAAGTTTAGGAGCAAACAACCAACACCAACCGGCAT
TTAACGTACCGCTGATCAATTCATCAGTAATCCGAACCAAAGATGAAAAC
ATTCCTGACGGCTATGGTAAAAAACAACCTTCAGATTTCGATGTTTTGTC
GAACATGTGATGAGTGTTTATGTTACCGTCTACAAAAACTCTTCGTCGGT
AAAAAGAGATTATTGGTAAGTGACAAATCATTCACCTCACCAAAACCGGG
ATTTTTTCATTCCGTTTCTTTGTGAGCTCCACTTTGACGATTTTTGAAAA
ATAGAAGCCTTTCAAGTGTCTTGACGTAAATTCGATTTTTTTCGCTACTG
CAGGAGCTTCGAAAGTTAAAAGTGAAGTAAAAAAATCGAATGTTTGGAGT
CCGAAAACCTGGGCTCCAAACATTCGAAAAACTTGCAAAGTGGTATGGAC
GTAAATTACGTTGAAAAAGCTGGTATAGGCTACGAATTTTTTTGTCGACG
AATATTTTTTTTGCTAAGTAGATTTCCCCCGACAAATTTTCTACCGTTAA
AGTTAAATGTAATGTAATTCTCGGATCTTGACCCACAAATCCTCACAGAA
TAGCATATATTGGACAAAACTACTTTAAAGCGTCAATTTGCAATAACCTG
CTTGCCTTTACGTTGTAAACATCTTCATGTTTGATAGCATACGTCACCCC
TGTGTCACAGACCCGCTGGAACACCAGCCCCGCTGGAAAATTTGGCAAAA
ATTTCGTCCCCAGTGAGAAAATACTCTGAAATTTCAGCACCGCTGGTAAT
TTGACTTTGATTTCATCTCCATTCGAGATTCAATGTTTAAAAATTGCACT
CCAAAGCCATCCCAACTGGATTCTTTAACCTTGGAACAATAAAATTCTTA
TCCCAATTGAGATTTCAATAGGAATTTTTATCCCCACTGAGGAAAAAGTT
CCACCGGGGCTGTGAGACAGGGGTGTCATACGGAATGTCATTGATGAACT
ATGATGGATATTGTACCGTTAAATATAAAAGCTCGCTTAGCAATCAAATG
CGTCAAAATGGTAATAATTCAGATAGTGCTCAGGTAAAGTCACTTGGAAA
AAATACCAAACTGGTGCTCATCTGCGAATAAATTTTGGCAGAGTCTTTTC
TTACCGACCAGCATGGTTCGTCTATCGAATGTTGAGCTTTTGGATTGTTA
AGGGTACTTACAATGTGAAATGATTTCGATTCTGAGAGAAAACATTTTTG
TTAAAACCGCGAAAAACTTCTTGGTAATTGGGAATTTTATACATTTTTGA
TCGTTTTGATGTGAAAGCTTTGGATCAACAATGACATTTGTTTTGATATG
TGATTTGTTTGTAAATATGAAAAAAAGATAAACTTTAACAAACAACATTT
TATATATTTTTGATACTTGAGAATTTGTTATTTTTTAGATTTCTTAAGTG
AAAAAGTTGATTTGTGAACTAGAAAAACCAGATGGTGATTCATCTAGAGT
GTCTCAAAAGACGAAGTTTGGACCCGGGGGCACTCGATTCAAAAATGACC
ATGAGTGCGGCCCAAAATTAGGCCTTTGAAATCGGACCCTTACAGTGCAC
TTCTTTGAAGATCTTTGACCATTTTTAGGCAAAATATGGTCAGATTTTCA
AAACTTTACACTCTTAGAGTGCAATTTTTCTCATCTTTGCTCATGTCGAT
CCTAAGAGTGGACTTTACGAAGCTTGGAAAAGGGACGCTTCAGGACCGCA
CATACGGTAAGTCGTTTACCTTGAGTGCCCCTTCTCCCGGGAGTTTATAT
GTGATTTGTTTGTAAATATGAAAAGAAGATAAACTTTAACAAACAACATT
TTATATATTTTTGGTCGATCTTTTTTAATCCACCCTAAAGACTAAAAATT
ACTTAAAATCGACCTCTCAAATAAGTTTCTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029145-exon-sc0000726-1575043694:101260..101282 | TCONS_00029145-exon-sc0000726-1575043694:101260..101282 | Clytia hemisphaerica | exon |
| TCONS_00029145-exon-sc0000726-1575043694:96247..98934 | TCONS_00029145-exon-sc0000726-1575043694:96247..98934 | Clytia hemisphaerica | exon |
| TCONS_00029145-exon-sc0000726-1510915933:101260..101282 | TCONS_00029145-exon-sc0000726-1510915933:101260..101282 | Clytia hemisphaerica | exon |
| TCONS_00029145-exon-sc0000726-1510915933:96247..98934 | TCONS_00029145-exon-sc0000726-1510915933:96247..98934 | Clytia hemisphaerica | exon |
| TCONS_00029145-exon-sc0000726-1491911889:101260..101282 | TCONS_00029145-exon-sc0000726-1491911889:101260..101282 | Clytia hemisphaerica | exon |
| TCONS_00029145-exon-sc0000726-1491911889:96247..98934 | TCONS_00029145-exon-sc0000726-1491911889:96247..98934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000726 | supercontig | sc0000726:96247..101282 - |
Blast
BLAST of TCONS_00029145 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 310.842 bits (795), Expect = 1.109e-97 Identity = 141/182 (77.47%), Postives = 160/182 (87.91%), Query Frame = 3
Query: 114 SFTPEQVACVCEVLEQSGNFDRLARFLWSLPTYDDIYANEAVLVAKSVVAYHQENLQELYHIIENNTFSPIYHPKLQMLWLKAHYTEAEKIRGRPLGAVGKYRVRRKYPLPRTIWDGEETSYCFKEKSRVVLRDWYARNPYPSPREKKELSEGTGLSTTQVSNWFKNRRQRDRAAEVKERED 659
FT EQVACVCEVL+Q GN +RL RFLWSLP D ++ NE+VL AK+VVA+H+ N +ELY I+E++ FSP HPKLQ LWLKAHY EAEK+RGRPLGAVGKYRVRRK+PLPRTIWDGEETSYCFKEKSR VLR+WYA NPYPSPREK+EL+E TGL+TTQVSNWFKNRRQRDRAAE KERE+
Sbjct: 8 GFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKEREN 189
The following BLAST results are available for this feature:
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